CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 44 | L44L | L4184L | syn | Ctg | Ttg | 7173 | 5369 | 0.748501 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44L | L4184L | syn | ctG | ctT | 7173 | 1498 | 0.208839 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44L | L4184L | syn | ctG | ctA | 7173 | 299 | 0.0416841 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44L | L4184L | syn | ctG | ctC | 7173 | 7 | 0.000975882 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44M | L4184M | nonsyn | Ctg | Atg | 66 | 66 | 1 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44del | L4184del | del | CTG | --- | 39 | 39 | 1 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44P | L4184P | nonsyn | cTg | cCg | 9 | 9 | 1 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44V | L4184V | nonsyn | Ctg | Gtg | 3 | 3 | 1 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44del1 | L4184del1 | del | ctG | ct- | 3 | 2 | 0.666667 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44del1 | L4184del1 | del | Ctg | -tg | 3 | 1 | 0.333333 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44R | L4184R | nonsyn | cTg | cGg | 2 | 2 | 1 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44del2 | L4184del2 | del | CTg | --g | 2 | 2 | 1 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44Q | L4184Q | nonsyn | cTg | cAg | 2 | 2 | 1 | 12815-12817 |
ORF1ab/nsp9 | 44 | L44H | L4184H | nonsyn | cTG | cAC | 1 | 1 | 1 | 12815-12817 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 5369 | 7173 | All | 0.001027 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1498 | 7173 | All | 0.000287 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 299 | 7173 | All | 0.000057 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctC | 7 | 7173 | All | 0.000001 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1964 | 1964 | A.2.5 | 0.98004 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 700 | 821 | B.1.1.7 | 0.000627 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 88 | 821 | B.1.1.7 | 0.000079 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 32 | 821 | B.1.1.7 | 0.000029 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctC | 1 | 821 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 624 | 624 | A.2.5.2 | 0.981132 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 489 | 490 | AY.4.2 | 0.010606 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 490 | AY.4.2 | 0.000022 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 297 | 297 | A.2.4 | 1 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 201 | 251 | B.1.617.2 | 0.000757 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 42 | 251 | B.1.617.2 | 0.000158 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 8 | 251 | B.1.617.2 | 0.00003 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 212 | 213 | AY.121 | 0.028687 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 213 | AY.121 | 0.000135 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 206 | 206 | A.2.5.1 | 0.990385 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 92 | 191 | AY.4 | 0.000143 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 68 | 191 | AY.4 | 0.000106 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 31 | 191 | AY.4 | 0.000048 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 171 | 171 | AY.39.1 | 0.006774 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 133 | 147 | AY.43 | 0.000589 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 13 | 147 | AY.43 | 0.000058 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 147 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 122 | 123 | AY.23 | 0.008509 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 123 | AY.23 | 0.00007 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 96 | 96 | A.2.5.3 | 0.989691 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 65 | 87 | AY.103 | 0.000404 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 17 | 87 | AY.103 | 0.000106 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 5 | 87 | AY.103 | 0.000031 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 49 | 86 | P.1 | 0.000772 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 37 | 86 | P.1 | 0.000583 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 81 | 81 | B.1.1.329 | 0.311538 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 71 | 71 | AY.105 | 0.045659 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 33 | 69 | AY.44 | 0.000201 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 27 | 69 | AY.44 | 0.000164 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 7 | 69 | AY.44 | 0.000043 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctC | 2 | 69 | AY.44 | 0.000012 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 66 | 66 | All | 0.000013 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 40 | 58 | AY.3 | 0.000398 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 14 | 58 | AY.3 | 0.000139 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 4 | 58 | AY.3 | 0.00004 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 48 | 53 | B.1.177 | 0.000632 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 5 | 53 | B.1.177 | 0.000066 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 25 | 52 | B.1.1 | 0.000454 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 21 | 52 | B.1.1 | 0.000381 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 6 | 52 | B.1.1 | 0.000109 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 50 | 50 | B.1.1.214 | 0.002773 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 50 | 50 | P.1.15 | 0.011617 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 20 | 49 | B.1 | 0.000183 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 19 | 49 | B.1 | 0.000174 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 10 | 49 | B.1 | 0.000092 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 42 | 45 | B.1.429 | 0.000988 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 45 | B.1.429 | 0.000047 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 45 | B.1.429 | 0.000024 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 39 | 39 | All | 0.000007 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 27 | 39 | AY.26 | 0.000764 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 11 | 39 | AY.26 | 0.000311 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 39 | AY.26 | 0.000028 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 30 | 37 | AY.102 | 0.000795 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 5 | 37 | AY.102 | 0.000133 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 2 | 37 | AY.102 | 0.000053 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 20 | 34 | AY.25 | 0.00012 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 12 | 34 | AY.25 | 0.000072 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 2 | 34 | AY.25 | 0.000012 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 24 | 31 | B.1.2 | 0.000211 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 4 | 31 | B.1.2 | 0.000035 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 3 | 31 | B.1.2 | 0.000026 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 20 | 30 | AY.20 | 0.000777 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 10 | 30 | AY.20 | 0.000389 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 16 | 30 | AY.39 | 0.000395 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 14 | 30 | AY.39 | 0.000346 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 30 | 30 | AY.92 | 0.008618 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 23 | 28 | AY.33 | 0.001536 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 5 | 28 | AY.33 | 0.000334 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 15 | 21 | AY.29 | 0.000237 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 4 | 21 | AY.29 | 0.000063 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 2 | 21 | AY.29 | 0.000032 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 10 | 19 | B.1.1.519 | 0.000397 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 6 | 19 | B.1.1.519 | 0.000238 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 3 | 19 | B.1.1.519 | 0.000119 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 14 | 17 | B.1.351 | 0.000416 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 17 | B.1.351 | 0.000059 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 17 | B.1.351 | 0.00003 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 17 | 17 | C.8 | 0.075893 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 14 | 15 | A.2 | 0.009265 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 15 | A.2 | 0.000662 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 10 | 13 | AY.61 | 0.001048 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 13 | AY.61 | 0.000314 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 12 | 12 | P.1.17 | 0.001941 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 11 | 11 | AY.96 | 0.022822 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp9 | 44 | L44P | cTg | cCg | 9 | 9 | All | 0.000002 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 9 | 9 | AY.4.3 | 0.007576 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 9 | 9 | B.1.1.176 | 0.003954 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 9 | 9 | B.1.177.81 | 0.001704 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 8 | 8 | AY.46.5 | 0.001587 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 8 | B.1.221 | 0.000284 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 4 | 8 | B.1.221 | 0.000284 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 5 | 8 | B.1.243 | 0.000348 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 3 | 8 | B.1.243 | 0.000209 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 7 | AY.45 | 0.000487 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 3 | 7 | AY.45 | 0.000365 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 7 | 7 | B.1.1.121 | 0.01699 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 7 | B.1.240 | 0.000862 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 3 | 7 | B.1.240 | 0.000647 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 6 | 7 | C.3 | 0.045802 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 7 | C.3 | 0.007634 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 7 | P.1.14 | 0.000143 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 2 | 7 | P.1.14 | 0.000096 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 7 | P.1.14 | 0.000096 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 5 | 6 | AY.118 | 0.000313 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 6 | AY.118 | 0.000063 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 4 | 6 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 6 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctC | 4 | 6 | B.1.1.28 | 0.001245 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 6 | B.1.1.28 | 0.000311 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 6 | B.1.1.28 | 0.000311 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 4 | 5 | AY.46.6 | 0.000289 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 5 | AY.46.6 | 0.000072 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 5 | AY.98 | 0.000237 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 5 | AY.98 | 0.000079 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 5 | AY.98 | 0.000079 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 4 | 5 | AY.98.1 | 0.000194 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 5 | AY.98.1 | 0.000048 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 5 | B.1.1.25 | 0.002274 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 5 | B.1.1.25 | 0.000569 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 5 | B.1.427 | 0.000151 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 5 | B.1.427 | 0.000101 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 3 | 5 | P.1.12 | 0.001452 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 5 | P.1.12 | 0.000968 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 4 | AY.116 | 0.000574 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 4 | AY.116 | 0.000574 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 2 | 4 | AY.120 | 0.000074 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 4 | AY.120 | 0.000037 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 4 | AY.120 | 0.000037 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 4 | AY.67 | 0.001857 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 4 | B.1.1.243 | 0.016327 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 4 | B.1.214.3 | 0.028571 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 4 | B.1.239 | 0.004884 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 4 | B.1.36 | 0.000438 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 4 | B.1.36 | 0.000146 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 4 | B.1.596 | 0.000261 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 4 | B.1.596 | 0.000087 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp9 | 44 | L44V | Ctg | Gtg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp9 | 44 | L44del1 | ctG | ct- | 2 | 3 | All | 0 |
ORF1ab/nsp9 | 44 | L44del1 | Ctg | -tg | 1 | 3 | All | 0 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 3 | AY.117 | 0.000169 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 3 | AY.117 | 0.000085 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 2 | 3 | AY.119 | 0.000071 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 3 | AY.119 | 0.000035 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 3 | AY.13 | 0.000322 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 3 | AY.13 | 0.000161 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 3 | B.1.1.58 | 0.016129 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 3 | B.1.160 | 0.000062 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 3 | B.1.160 | 0.000031 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 3 | B.1.36.38 | 0.004926 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 3 | B.1.398 | 0.008929 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 3 | 3 | B.1.433 | 0.009585 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 3 | B.1.525 | 0.000226 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 3 | B.1.525 | 0.000113 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 3 | B.1.621 | 0.000177 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 3 | B.1.621 | 0.000089 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 3 | D.2 | 0.00015 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 3 | D.2 | 0.000075 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 3 | Q.8 | 0.00033 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 3 | Q.8 | 0.000165 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 2 | A | 0.000774 |
ORF1ab/nsp9 | 44 | L44R | cTg | cGg | 2 | 2 | All | 0 |
ORF1ab/nsp9 | 44 | L44Q | cTg | cAg | 2 | 2 | All | 0 |
ORF1ab/nsp9 | 44 | L44del2 | CTg | --g | 2 | 2 | All | 0 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 2 | AY.36 | 0.000148 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 2 | AY.36 | 0.000148 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 2 | B.1.1.222 | 0.000204 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 2 | B.1.1.222 | 0.000204 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 2 | B.1.1.318 | 0.000302 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 2 | B.1.1.318 | 0.000302 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp9 | 44 | L44Q | cTg | cAg | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 2 | B.1.400 | 0.000429 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 2 | B.1.400 | 0.000429 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 2 | B.1.416 | 0.001269 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 2 | B.1.416 | 0.001269 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 2 | C.35 | 0.000774 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 2 | C.35 | 0.000774 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 2 | Q.3 | 0.000145 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 2 | Q.3 | 0.000145 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp9 | 44 | L44H | cTG | cAC | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp9 | 44 | L44P | cTg | cCg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp9 | 44 | L44P | cTg | cCg | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp9 | 44 | L44V | Ctg | Gtg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 44 | L44R | cTg | cGg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 44 | L44P | cTg | cCg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp9 | 44 | L44V | Ctg | Gtg | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp9 | 44 | L44del2 | CTg | --g | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp9 | 44 | L44P | cTg | cCg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 44 | L44H | cTG | cAC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 44 | L44R | cTg | cGg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.1.272 | 0.005208 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.1.459 | 0.015385 |
ORF1ab/nsp9 | 44 | L44P | cTg | cCg | 1 | 1 | B.1.1.500 | 0.02 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp9 | 44 | L44V | Ctg | Gtg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.1.77 | 0.041667 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 44 | L44P | cTg | cCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp9 | 44 | L44P | cTg | cCg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 44 | L44del1 | ctG | ct- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.423 | 0.010204 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.573 | 0.006098 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp9 | 44 | L44del1 | ctG | ct- | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp9 | 44 | L44del1 | Ctg | -tg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 44 | L44del2 | CTg | --g | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp9 | 44 | L44P | cTg | cCg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | K.2 | 0.04 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp9 | 44 | L44P | cTg | cCg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp9 | 44 | L44M | Ctg | Atg | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp9 | 44 | L44del | CTG | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp9 | 44 | L44L | ctG | ctA | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp9 | 44 | L44L | Ctg | Ttg | 1 | 1 | W.2 | 0.004831 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|