CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 32 & Codon = taT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp932Y32YY4172YsyntaCtaT63686368112779-12781

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp932Y32YtaCtaT63686368All0.001218
ORF1ab/nsp932Y32YtaCtaT12941294B.1.1.70.001158
ORF1ab/nsp932Y32YtaCtaT504504AY.40.000784
ORF1ab/nsp932Y32YtaCtaT374374B.1.617.20.001408
ORF1ab/nsp932Y32YtaCtaT285285B.1.20.00251
ORF1ab/nsp932Y32YtaCtaT245245B.1.1.2140.013587
ORF1ab/nsp932Y32YtaCtaT224224AY.440.001363
ORF1ab/nsp932Y32YtaCtaT211211AY.250.001269
ORF1ab/nsp932Y32YtaCtaT185185B.1.1.1760.081283
ORF1ab/nsp932Y32YtaCtaT174174AY.1020.004613
ORF1ab/nsp932Y32YtaCtaT150150B.1.1770.001975
ORF1ab/nsp932Y32YtaCtaT142142P.10.002237
ORF1ab/nsp932Y32YtaCtaT140140B.1.1.5250.765027
ORF1ab/nsp932Y32YtaCtaT133133AY.430.000589
ORF1ab/nsp932Y32YtaCtaT119119B.10.00109
ORF1ab/nsp932Y32YtaCtaT104104P.1.10.033037
ORF1ab/nsp932Y32YtaCtaT102102B.1.1180.684564
ORF1ab/nsp932Y32YtaCtaT9797AY.30.000965
ORF1ab/nsp932Y32YtaCtaT9090B.1.5260.002115
ORF1ab/nsp932Y32YtaCtaT7171AY.1030.000441
ORF1ab/nsp932Y32YtaCtaT6161B.1.10.001107
ORF1ab/nsp932Y32YtaCtaT5959B.1.4290.001388
ORF1ab/nsp932Y32YtaCtaT5757AY.39.10.002258
ORF1ab/nsp932Y32YtaCtaT5353AY.1200.00197
ORF1ab/nsp932Y32YtaCtaT5252B.310.19403
ORF1ab/nsp932Y32YtaCtaT5050B.1.2580.003327
ORF1ab/nsp932Y32YtaCtaT4747AY.780.072419
ORF1ab/nsp932Y32YtaCtaT4242B.1.2210.002983
ORF1ab/nsp932Y32YtaCtaT4141AY.1180.002569
ORF1ab/nsp932Y32YtaCtaT4141AY.390.001013
ORF1ab/nsp932Y32YtaCtaT4040B.1.1.2220.00816
ORF1ab/nsp932Y32YtaCtaT3939AY.200.001516
ORF1ab/nsp932Y32YtaCtaT3737B.1.1600.001154
ORF1ab/nsp932Y32YtaCtaT3434AY.290.000536
ORF1ab/nsp932Y32YtaCtaT3434B.1.3510.001011
ORF1ab/nsp932Y32YtaCtaT3030AY.9.20.001102
ORF1ab/nsp932Y32YtaCtaT2525AY.470.000778
ORF1ab/nsp932Y32YtaCtaT2424B.1.1.3910.205128
ORF1ab/nsp932Y32YtaCtaT2424B.1.360.003502
ORF1ab/nsp932Y32YtaCtaT2323B.1.5960.002004
ORF1ab/nsp932Y32YtaCtaT2222AY.4.2.10.003278
ORF1ab/nsp932Y32YtaCtaT2222C.370.002553
ORF1ab/nsp932Y32YtaCtaT2222Q.10.002779
ORF1ab/nsp932Y32YtaCtaT2121AY.610.0022
ORF1ab/nsp932Y32YtaCtaT2121B.1.2430.001461
ORF1ab/nsp932Y32YtaCtaT2020B.1.1.280.006225
ORF1ab/nsp932Y32YtaCtaT2020B.1.4270.00101
ORF1ab/nsp932Y32YtaCtaT1919AY.260.000538
ORF1ab/nsp932Y32YtaCtaT1717AY.910.012418
ORF1ab/nsp932Y32YtaCtaT1616AY.1000.000736
ORF1ab/nsp932Y32YtaCtaT1616AY.380.007988
ORF1ab/nsp932Y32YtaCtaT1515B.1.1.5190.000596
ORF1ab/nsp932Y32YtaCtaT1414AY.1130.001993
ORF1ab/nsp932Y32YtaCtaT1313AY.90.000879
ORF1ab/nsp932Y32YtaCtaT1313B.1.438.10.001394
ORF1ab/nsp932Y32YtaCtaT1212B.1.1.10.00392
ORF1ab/nsp932Y32YtaCtaT1212B.1.177.750.012487
ORF1ab/nsp932Y32YtaCtaT1111AY.4.20.000239
ORF1ab/nsp932Y32YtaCtaT1111AY.980.000869
ORF1ab/nsp932Y32YtaCtaT1111B.1.1.250.006254
ORF1ab/nsp932Y32YtaCtaT1111B.1.36.180.004622
ORF1ab/nsp932Y32YtaCtaT1010AY.1190.000353
ORF1ab/nsp932Y32YtaCtaT1010AY.340.00097
ORF1ab/nsp932Y32YtaCtaT1010B.1.4480.026247
ORF1ab/nsp932Y32YtaCtaT99AY.230.000628
ORF1ab/nsp932Y32YtaCtaT99AY.330.000601
ORF1ab/nsp932Y32YtaCtaT99AY.350.002097
ORF1ab/nsp932Y32YtaCtaT99AY.50.000186
ORF1ab/nsp932Y32YtaCtaT99AY.930.002458
ORF1ab/nsp932Y32YtaCtaT99AY.99.20.000829
ORF1ab/nsp932Y32YtaCtaT99B.1.1.2890.01875
ORF1ab/nsp932Y32YtaCtaT99D.20.000675
ORF1ab/nsp932Y32YtaCtaT88B.1.177.50.009938
ORF1ab/nsp932Y32YtaCtaT88B.1.177.790.018735
ORF1ab/nsp932Y32YtaCtaT77AY.1210.000947
ORF1ab/nsp932Y32YtaCtaT77AY.540.000667
ORF1ab/nsp932Y32YtaCtaT77AY.750.000392
ORF1ab/nsp932Y32YtaCtaT77AY.75.10.001262
ORF1ab/nsp932Y32YtaCtaT77B.1.36.290.003621
ORF1ab/nsp932Y32YtaCtaT77B.1.5250.000792
ORF1ab/nsp932Y32YtaCtaT77B.1.6370.000512
ORF1ab/nsp932Y32YtaCtaT77P.1.150.001626
ORF1ab/nsp932Y32YtaCtaT66AY.1040.011905
ORF1ab/nsp932Y32YtaCtaT66AY.1170.000507
ORF1ab/nsp932Y32YtaCtaT66AY.9.10.000502
ORF1ab/nsp932Y32YtaCtaT66B.1.1.2370.032432
ORF1ab/nsp932Y32YtaCtaT66B.1.2400.001293
ORF1ab/nsp932Y32YtaCtaT66B.1.6210.000531
ORF1ab/nsp932Y32YtaCtaT66P.1.140.000287
ORF1ab/nsp932Y32YtaCtaT55AY.1110.000916
ORF1ab/nsp932Y32YtaCtaT55AY.240.002155
ORF1ab/nsp932Y32YtaCtaT55AY.450.000608
ORF1ab/nsp932Y32YtaCtaT55AY.46.40.000823
ORF1ab/nsp932Y32YtaCtaT55AY.98.10.000242
ORF1ab/nsp932Y32YtaCtaT55B0.000639
ORF1ab/nsp932Y32YtaCtaT55B.1.1.330.002104
ORF1ab/nsp932Y32YtaCtaT55B.1.1.370.000964
ORF1ab/nsp932Y32YtaCtaT55B.1.177.40.001055
ORF1ab/nsp932Y32YtaCtaT55B.1.3110.001373
ORF1ab/nsp932Y32YtaCtaT55B.1.36.80.005
ORF1ab/nsp932Y32YtaCtaT55B.1.5900.022727
ORF1ab/nsp932Y32YtaCtaT44AY.1010.001962
ORF1ab/nsp932Y32YtaCtaT44AY.420.000161
ORF1ab/nsp932Y32YtaCtaT44AY.460.000416
ORF1ab/nsp932Y32YtaCtaT44AY.60.000165
ORF1ab/nsp932Y32YtaCtaT44AY.7.20.002237
ORF1ab/nsp932Y32YtaCtaT44AY.740.000463
ORF1ab/nsp932Y32YtaCtaT44B.1.1.1570.003653
ORF1ab/nsp932Y32YtaCtaT44B.1.1.4340.001394
ORF1ab/nsp932Y32YtaCtaT44B.1.1.4640.005891
ORF1ab/nsp932Y32YtaCtaT44B.1.3690.001141
ORF1ab/nsp932Y32YtaCtaT44B.1.5890.030303
ORF1ab/nsp932Y32YtaCtaT44B.1.5950.001044
ORF1ab/nsp932Y32YtaCtaT44C.350.003096
ORF1ab/nsp932Y32YtaCtaT44R.10.00036
ORF1ab/nsp932Y32YtaCtaT33AY.3.10.000256
ORF1ab/nsp932Y32YtaCtaT33AY.300.001187
ORF1ab/nsp932Y32YtaCtaT33AY.5.10.011278
ORF1ab/nsp932Y32YtaCtaT33AY.5.30.001012
ORF1ab/nsp932Y32YtaCtaT33AY.840.001312
ORF1ab/nsp932Y32YtaCtaT33B.1.1.1530.003286
ORF1ab/nsp932Y32YtaCtaT33B.1.1.1980.004405
ORF1ab/nsp932Y32YtaCtaT33B.1.1.2430.012245
ORF1ab/nsp932Y32YtaCtaT33B.1.1.2940.003797
ORF1ab/nsp932Y32YtaCtaT33B.1.1.3170.001235
ORF1ab/nsp932Y32YtaCtaT33B.1.1.500.002037
ORF1ab/nsp932Y32YtaCtaT33B.1.1110.003525
ORF1ab/nsp932Y32YtaCtaT33B.1.160.290.012658
ORF1ab/nsp932Y32YtaCtaT33B.1.177.110.005093
ORF1ab/nsp932Y32YtaCtaT33B.1.177.190.004292
ORF1ab/nsp932Y32YtaCtaT33B.1.177.810.000568
ORF1ab/nsp932Y32YtaCtaT33B.1.4650.011407
ORF1ab/nsp932Y32YtaCtaT33B.1.466.20.001174
ORF1ab/nsp932Y32YtaCtaT33B.1.6200.002838
ORF1ab/nsp932Y32YtaCtaT33N.60.021277
ORF1ab/nsp932Y32YtaCtaT33P.1.120.001452
ORF1ab/nsp932Y32YtaCtaT33P.20.00056
ORF1ab/nsp932Y32YtaCtaT22A.20.001324
ORF1ab/nsp932Y32YtaCtaT22A.2.5.10.009615
ORF1ab/nsp932Y32YtaCtaT22AU.30.004219
ORF1ab/nsp932Y32YtaCtaT22AY.1160.000574
ORF1ab/nsp932Y32YtaCtaT22AY.16.10.00094
ORF1ab/nsp932Y32YtaCtaT22AY.23.10.000835
ORF1ab/nsp932Y32YtaCtaT22AY.270.000129
ORF1ab/nsp932Y32YtaCtaT22AY.29.10.000441
ORF1ab/nsp932Y32YtaCtaT22AY.46.60.000144
ORF1ab/nsp932Y32YtaCtaT22AY.5.40.000553
ORF1ab/nsp932Y32YtaCtaT22AY.520.001629
ORF1ab/nsp932Y32YtaCtaT22AY.70.000392
ORF1ab/nsp932Y32YtaCtaT22AY.820.002714
ORF1ab/nsp932Y32YtaCtaT22AY.850.000854
ORF1ab/nsp932Y32YtaCtaT22AY.880.001768
ORF1ab/nsp932Y32YtaCtaT22B.1.1.100.00223
ORF1ab/nsp932Y32YtaCtaT22B.1.1.2160.001781
ORF1ab/nsp932Y32YtaCtaT22B.1.1.2770.001517
ORF1ab/nsp932Y32YtaCtaT22B.1.1.2910.001485
ORF1ab/nsp932Y32YtaCtaT22B.1.1.3050.007722
ORF1ab/nsp932Y32YtaCtaT22B.1.1.3060.000877
ORF1ab/nsp932Y32YtaCtaT22B.1.177.210.000153
ORF1ab/nsp932Y32YtaCtaT22B.1.177.730.001133
ORF1ab/nsp932Y32YtaCtaT22B.1.2390.002442
ORF1ab/nsp932Y32YtaCtaT22B.1.2410.001623
ORF1ab/nsp932Y32YtaCtaT22B.1.3200.002491
ORF1ab/nsp932Y32YtaCtaT22B.1.3670.001585
ORF1ab/nsp932Y32YtaCtaT22B.1.3890.002004
ORF1ab/nsp932Y32YtaCtaT22B.1.4620.014493
ORF1ab/nsp932Y32YtaCtaT22B.1.5610.000794
ORF1ab/nsp932Y32YtaCtaT22B.1.5750.000607
ORF1ab/nsp932Y32YtaCtaT22B.1.5820.000981
ORF1ab/nsp932Y32YtaCtaT22B.1.6090.000959
ORF1ab/nsp932Y32YtaCtaT22B.1.9.50.011364
ORF1ab/nsp932Y32YtaCtaT22B.400.000729
ORF1ab/nsp932Y32YtaCtaT22C.230.011628
ORF1ab/nsp932Y32YtaCtaT22C.36.30.001134
ORF1ab/nsp932Y32YtaCtaT22P.1.170.000324
ORF1ab/nsp932Y32YtaCtaT22P.1.70.000639
ORF1ab/nsp932Y32YtaCtaT22Q.80.00033
ORF1ab/nsp932Y32YtaCtaT11AW.10.003049
ORF1ab/nsp932Y32YtaCtaT11AY.10.000396
ORF1ab/nsp932Y32YtaCtaT11AY.100.00053
ORF1ab/nsp932Y32YtaCtaT11AY.1090.00074
ORF1ab/nsp932Y32YtaCtaT11AY.120.000316
ORF1ab/nsp932Y32YtaCtaT11AY.130.000161
ORF1ab/nsp932Y32YtaCtaT11AY.20.000356
ORF1ab/nsp932Y32YtaCtaT11AY.280.00189
ORF1ab/nsp932Y32YtaCtaT11AY.320.000532
ORF1ab/nsp932Y32YtaCtaT11AY.370.000316
ORF1ab/nsp932Y32YtaCtaT11AY.39.20.001541
ORF1ab/nsp932Y32YtaCtaT11AY.4.10.000737
ORF1ab/nsp932Y32YtaCtaT11AY.46.10.001027
ORF1ab/nsp932Y32YtaCtaT11AY.46.20.000635
ORF1ab/nsp932Y32YtaCtaT11AY.46.50.000198
ORF1ab/nsp932Y32YtaCtaT11AY.500.000799
ORF1ab/nsp932Y32YtaCtaT11AY.510.000909
ORF1ab/nsp932Y32YtaCtaT11AY.550.000917
ORF1ab/nsp932Y32YtaCtaT11AY.620.000436
ORF1ab/nsp932Y32YtaCtaT11AY.640.000595
ORF1ab/nsp932Y32YtaCtaT11AY.7.10.000113
ORF1ab/nsp932Y32YtaCtaT11AY.700.000209
ORF1ab/nsp932Y32YtaCtaT11AY.940.000443
ORF1ab/nsp932Y32YtaCtaT11AY.990.001049
ORF1ab/nsp932Y32YtaCtaT11B.1.1.1010.01
ORF1ab/nsp932Y32YtaCtaT11B.1.1.1170.009709
ORF1ab/nsp932Y32YtaCtaT11B.1.1.1210.002427
ORF1ab/nsp932Y32YtaCtaT11B.1.1.1890.001513
ORF1ab/nsp932Y32YtaCtaT11B.1.1.2720.005208
ORF1ab/nsp932Y32YtaCtaT11B.1.1.3110.000358
ORF1ab/nsp932Y32YtaCtaT11B.1.1.3160.000925
ORF1ab/nsp932Y32YtaCtaT11B.1.1.3180.000302
ORF1ab/nsp932Y32YtaCtaT11B.1.1.3260.001761
ORF1ab/nsp932Y32YtaCtaT11B.1.1.3360.016667
ORF1ab/nsp932Y32YtaCtaT11B.1.1.3740.002375
ORF1ab/nsp932Y32YtaCtaT11B.1.1.4070.041667
ORF1ab/nsp932Y32YtaCtaT11B.1.1.4130.006897
ORF1ab/nsp932Y32YtaCtaT11B.1.1.4270.142857
ORF1ab/nsp932Y32YtaCtaT11B.1.1.440.00241
ORF1ab/nsp932Y32YtaCtaT11B.1.1.540.003021
ORF1ab/nsp932Y32YtaCtaT11B.1.1.570.011494
ORF1ab/nsp932Y32YtaCtaT11B.1.1.630.000386
ORF1ab/nsp932Y32YtaCtaT11B.1.1.700.000341
ORF1ab/nsp932Y32YtaCtaT11B.1.1080.005814
ORF1ab/nsp932Y32YtaCtaT11B.1.1260.001276
ORF1ab/nsp932Y32YtaCtaT11B.1.1390.000733
ORF1ab/nsp932Y32YtaCtaT11B.1.1470.000756
ORF1ab/nsp932Y32YtaCtaT11B.1.160.280.002924
ORF1ab/nsp932Y32YtaCtaT11B.1.1690.014925
ORF1ab/nsp932Y32YtaCtaT11B.1.177.150.000631
ORF1ab/nsp932Y32YtaCtaT11B.1.177.330.001645
ORF1ab/nsp932Y32YtaCtaT11B.1.177.440.000519
ORF1ab/nsp932Y32YtaCtaT11B.1.177.600.000218
ORF1ab/nsp932Y32YtaCtaT11B.1.177.650.000665
ORF1ab/nsp932Y32YtaCtaT11B.1.2010.005682
ORF1ab/nsp932Y32YtaCtaT11B.1.2060.000816
ORF1ab/nsp932Y32YtaCtaT11B.1.2140.003663
ORF1ab/nsp932Y32YtaCtaT11B.1.2230.002778
ORF1ab/nsp932Y32YtaCtaT11B.1.2330.014085
ORF1ab/nsp932Y32YtaCtaT11B.1.2340.000132
ORF1ab/nsp932Y32YtaCtaT11B.1.2650.001271
ORF1ab/nsp932Y32YtaCtaT11B.1.30.002618
ORF1ab/nsp932Y32YtaCtaT11B.1.3330.010526
ORF1ab/nsp932Y32YtaCtaT11B.1.351.20.000303
ORF1ab/nsp932Y32YtaCtaT11B.1.36.70.004
ORF1ab/nsp932Y32YtaCtaT11B.1.3610.001289
ORF1ab/nsp932Y32YtaCtaT11B.1.3750.00082
ORF1ab/nsp932Y32YtaCtaT11B.1.3800.006623
ORF1ab/nsp932Y32YtaCtaT11B.1.4160.001269
ORF1ab/nsp932Y32YtaCtaT11B.1.4170.028571
ORF1ab/nsp932Y32YtaCtaT11B.1.4560.003268
ORF1ab/nsp932Y32YtaCtaT11B.1.4590.004082
ORF1ab/nsp932Y32YtaCtaT11B.1.4970.000315
ORF1ab/nsp932Y32YtaCtaT11B.1.5030.002488
ORF1ab/nsp932Y32YtaCtaT11B.1.5090.000866
ORF1ab/nsp932Y32YtaCtaT11B.1.575.10.002439
ORF1ab/nsp932Y32YtaCtaT11B.1.5760.000907
ORF1ab/nsp932Y32YtaCtaT11B.1.5770.000687
ORF1ab/nsp932Y32YtaCtaT11B.1.60.017241
ORF1ab/nsp932Y32YtaCtaT11B.1.6030.010638
ORF1ab/nsp932Y32YtaCtaT11B.1.617.10.000129
ORF1ab/nsp932Y32YtaCtaT11B.1.6190.000871
ORF1ab/nsp932Y32YtaCtaT11B.1.6230.000536
ORF1ab/nsp932Y32YtaCtaT11B.1.6280.000352
ORF1ab/nsp932Y32YtaCtaT11B.1.6310.003367
ORF1ab/nsp932Y32YtaCtaT11B.1.6320.006711
ORF1ab/nsp932Y32YtaCtaT11B.230.002924
ORF1ab/nsp932Y32YtaCtaT11B.6.20.0625
ORF1ab/nsp932Y32YtaCtaT11C.10.002392
ORF1ab/nsp932Y32YtaCtaT11C.260.007353
ORF1ab/nsp932Y32YtaCtaT11C.36.3.10.002717
ORF1ab/nsp932Y32YtaCtaT11P.30.001595
ORF1ab/nsp932Y32YtaCtaT11Q.30.000145
ORF1ab/nsp932Y32YtaCtaT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.