CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 31

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp931Y31YY4171YsyntaCtaT116397116397112776-12778
ORF1ab/nsp931Y31XY4171XnonsyntaCtaA9999112776-12778
ORF1ab/nsp931Y31delY4171deldelTAC---88112776-12778
ORF1ab/nsp931Y31HY4171HnonsynTacCac88112776-12778
ORF1ab/nsp931Y31DY4171DnonsynTaCGaT210.512776-12778
ORF1ab/nsp931Y31DY4171DnonsynTacGac210.512776-12778
ORF1ab/nsp931Y31LY4171LnonsynTAcCTc11112776-12778
ORF1ab/nsp931Y31TY4171TnonsynTAcACc11112776-12778
ORF1ab/nsp931Y31CY4171CnonsyntActGc11112776-12778

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp931Y31YtaCtaT116397116397All0.022262
ORF1ab/nsp931Y31YtaCtaT6248762487P.10.984419
ORF1ab/nsp931Y31YtaCtaT2091320913P.1.140.999665
ORF1ab/nsp931Y31YtaCtaT61646164P.1.170.997088
ORF1ab/nsp931Y31YtaCtaT42664266P.1.150.991171
ORF1ab/nsp931Y31YtaCtaT37003700P.1.100.997036
ORF1ab/nsp931Y31YtaCtaT31223122P.1.70.996807
ORF1ab/nsp931Y31YtaCtaT30273027P.1.10.961563
ORF1ab/nsp931Y31YtaCtaT26432643P.1.160.988777
ORF1ab/nsp931Y31YtaCtaT19531953P.1.120.945305
ORF1ab/nsp931Y31YtaCtaT11431143P.1.17.11
ORF1ab/nsp931Y31YtaCtaT11061106P.1.130.993711
ORF1ab/nsp931Y31YtaCtaT10241024P.1.41
ORF1ab/nsp931Y31YtaCtaT861861P.1.20.995376
ORF1ab/nsp931Y31YtaCtaT860860B.1.1.70.00077
ORF1ab/nsp931Y31YtaCtaT514514P.1.61
ORF1ab/nsp931Y31YtaCtaT361361AY.40.000562
ORF1ab/nsp931Y31YtaCtaT209209P.1.81
ORF1ab/nsp931Y31YtaCtaT208208P.1.91
ORF1ab/nsp931Y31YtaCtaT179179B.1.10.003247
ORF1ab/nsp931Y31YtaCtaT151151AY.250.000908
ORF1ab/nsp931Y31YtaCtaT119119B.10.00109
ORF1ab/nsp931Y31YtaCtaT114114P.1.10.10.926829
ORF1ab/nsp931Y31XtaCtaA9999All0.000019
ORF1ab/nsp931Y31YtaCtaT9898P.1.111
ORF1ab/nsp931Y31YtaCtaT9292B.1.617.20.000346
ORF1ab/nsp931Y31YtaCtaT8282AY.790.099274
ORF1ab/nsp931Y31YtaCtaT5050AY.1030.00031
ORF1ab/nsp931Y31YtaCtaT4545B.1.20.000396
ORF1ab/nsp931Y31YtaCtaT4444AY.440.000268
ORF1ab/nsp931Y31YtaCtaT3737AY.160.014047
ORF1ab/nsp931Y31YtaCtaT3535C.370.004062
ORF1ab/nsp931Y31YtaCtaT3030B.1.3510.000892
ORF1ab/nsp931Y31YtaCtaT2929P.1.31
ORF1ab/nsp931Y31YtaCtaT2828AY.98.10.001356
ORF1ab/nsp931Y31YtaCtaT2727AY.390.000667
ORF1ab/nsp931Y31YtaCtaT2727AY.430.00012
ORF1ab/nsp931Y31YtaCtaT2727AY.460.00281
ORF1ab/nsp931Y31YtaCtaT2727B0.003451
ORF1ab/nsp931Y31YtaCtaT2525AY.330.001669
ORF1ab/nsp931Y31YtaCtaT2424P.1.10.21
ORF1ab/nsp931Y31YtaCtaT2323AY.30.000229
ORF1ab/nsp931Y31YtaCtaT2323B.1.3990.044487
ORF1ab/nsp931Y31YtaCtaT2121B.1.1.280.006536
ORF1ab/nsp931Y31YtaCtaT2121B.1.1.5280.100962
ORF1ab/nsp931Y31XtaCtaA2020B.1.1.70.000018
ORF1ab/nsp931Y31YtaCtaT1515B.1.1770.000198
ORF1ab/nsp931Y31YtaCtaT1313AY.470.000404
ORF1ab/nsp931Y31YtaCtaT1313B.1.2580.000865
ORF1ab/nsp931Y31YtaCtaT1313B.1.258.170.001352
ORF1ab/nsp931Y31YtaCtaT1313P.1.51
ORF1ab/nsp931Y31YtaCtaT1212A.290.06383
ORF1ab/nsp931Y31YtaCtaT1111A.2.50.005489
ORF1ab/nsp931Y31YtaCtaT1111AY.1000.000506
ORF1ab/nsp931Y31YtaCtaT1111AY.60.000452
ORF1ab/nsp931Y31YtaCtaT1111B.1.1.2980.009483
ORF1ab/nsp931Y31YtaCtaT1111B.1.1.5190.000437
ORF1ab/nsp931Y31XtaCtaA1111B.60.010009
ORF1ab/nsp931Y31YtaCtaT99B.1.4290.000212
ORF1ab/nsp931Y31YtaCtaT99B.1.6370.000658
ORF1ab/nsp931Y31delTAC---88All0.000002
ORF1ab/nsp931Y31HTacCac88All0.000002
ORF1ab/nsp931Y31YtaCtaT88AY.1020.000212
ORF1ab/nsp931Y31YtaCtaT77AY.230.000488
ORF1ab/nsp931Y31YtaCtaT77AY.510.006364
ORF1ab/nsp931Y31YtaCtaT77AY.99.20.000645
ORF1ab/nsp931Y31YtaCtaT77B.1.1.2140.000388
ORF1ab/nsp931Y31YtaCtaT77B.1.1600.000218
ORF1ab/nsp931Y31YtaCtaT66AY.290.000095
ORF1ab/nsp931Y31YtaCtaT66AY.610.000629
ORF1ab/nsp931Y31YtaCtaT66AY.9.10.000502
ORF1ab/nsp931Y31XtaCtaA66B.10.000055
ORF1ab/nsp931Y31XtaCtaA66B.1.10.000109
ORF1ab/nsp931Y31YtaCtaT66B.1.5260.000141
ORF1ab/nsp931Y31YtaCtaT55AY.140.00044
ORF1ab/nsp931Y31YtaCtaT55AY.200.000194
ORF1ab/nsp931Y31YtaCtaT55AY.420.000201
ORF1ab/nsp931Y31XtaCtaA55AY.430.000022
ORF1ab/nsp931Y31YtaCtaT55B.1.1.1610.017668
ORF1ab/nsp931Y31YtaCtaT55B.1.177.770.003631
ORF1ab/nsp931Y31YtaCtaT55B.1.5610.001985
ORF1ab/nsp931Y31YtaCtaT55B.1.5960.000436
ORF1ab/nsp931Y31YtaCtaT55C.37.10.013089
ORF1ab/nsp931Y31YtaCtaT55Q.10.000632
ORF1ab/nsp931Y31YtaCtaT55Q.80.000825
ORF1ab/nsp931Y31YtaCtaT44AY.4.50.00043
ORF1ab/nsp931Y31XtaCtaA44AY.440.000024
ORF1ab/nsp931Y31YtaCtaT44AY.46.60.000289
ORF1ab/nsp931Y31YtaCtaT44B.1.1.2630.006231
ORF1ab/nsp931Y31YtaCtaT44B.1.1.4870.022346
ORF1ab/nsp931Y31YtaCtaT44B.1.2210.000284
ORF1ab/nsp931Y31XtaCtaA44B.6.60.003556
ORF1ab/nsp931Y31YtaCtaT33AY.1190.000106
ORF1ab/nsp931Y31YtaCtaT33AY.260.000085
ORF1ab/nsp931Y31YtaCtaT33AY.360.000445
ORF1ab/nsp931Y31YtaCtaT33AY.450.000365
ORF1ab/nsp931Y31YtaCtaT33AY.7.10.000338
ORF1ab/nsp931Y31YtaCtaT33AY.840.001312
ORF1ab/nsp931Y31YtaCtaT33AY.920.000862
ORF1ab/nsp931Y31YtaCtaT33B.1.1.3180.000905
ORF1ab/nsp931Y31YtaCtaT33B.1.1.3720.002066
ORF1ab/nsp931Y31YtaCtaT33B.1.1.5070.026087
ORF1ab/nsp931Y31YtaCtaT33B.1.2340.000396
ORF1ab/nsp931Y31YtaCtaT33B.1.2400.000647
ORF1ab/nsp931Y31YtaCtaT33B.1.2430.000209
ORF1ab/nsp931Y31YtaCtaT33B.1.3490.002144
ORF1ab/nsp931Y31YtaCtaT33B.1.360.000438
ORF1ab/nsp931Y31YtaCtaT33B.1.6210.000266
ORF1ab/nsp931Y31YtaCtaT33N.50.0053
ORF1ab/nsp931Y31YtaCtaT33P.20.00056
ORF1ab/nsp931Y31YtaCtaT22AD.20.000438
ORF1ab/nsp931Y31DTacGac12All0
ORF1ab/nsp931Y31DTaCGaT12All0
ORF1ab/nsp931Y31XtaCtaA22AY.1170.000169
ORF1ab/nsp931Y31YtaCtaT22AY.1170.000169
ORF1ab/nsp931Y31YtaCtaT22AY.1180.000125
ORF1ab/nsp931Y31YtaCtaT22AY.1200.000074
ORF1ab/nsp931Y31XtaCtaA22AY.330.000134
ORF1ab/nsp931Y31YtaCtaT22AY.340.000194
ORF1ab/nsp931Y31XtaCtaA22AY.470.000062
ORF1ab/nsp931Y31YtaCtaT22AY.50.000041
ORF1ab/nsp931Y31YtaCtaT22AY.640.00119
ORF1ab/nsp931Y31YtaCtaT22AY.75.10.000361
ORF1ab/nsp931Y31HTacCac22B.1.10.000036
ORF1ab/nsp931Y31YtaCtaT22B.1.1.2200.003717
ORF1ab/nsp931Y31YtaCtaT22B.1.1.2260.011628
ORF1ab/nsp931Y31YtaCtaT22B.1.1.250.001137
ORF1ab/nsp931Y31YtaCtaT22B.1.1.4090.005666
ORF1ab/nsp931Y31YtaCtaT22B.1.1.4340.000697
ORF1ab/nsp931Y31XtaCtaA22B.1.1.5190.000079
ORF1ab/nsp931Y31YtaCtaT22B.1.1.5250.010929
ORF1ab/nsp931Y31YtaCtaT22B.1.1.540.006042
ORF1ab/nsp931Y31YtaCtaT22B.1.177.70.00033
ORF1ab/nsp931Y31YtaCtaT22B.1.177.80.001505
ORF1ab/nsp931Y31YtaCtaT22B.1.177.860.000367
ORF1ab/nsp931Y31HTacCac22B.1.20.000018
ORF1ab/nsp931Y31YtaCtaT22B.1.3240.00321
ORF1ab/nsp931Y31XtaCtaA22B.1.3510.000059
ORF1ab/nsp931Y31YtaCtaT22B.1.5170.000854
ORF1ab/nsp931Y31XtaCtaA22B.1.617.20.000008
ORF1ab/nsp931Y31YtaCtaT22B.1.6230.001073
ORF1ab/nsp931Y31YtaCtaT22Q.40.00091
ORF1ab/nsp931Y31YtaCtaT11A.180.05
ORF1ab/nsp931Y31TTAcACc11All0
ORF1ab/nsp931Y31CtActGc11All0
ORF1ab/nsp931Y31LTAcCTc11All0
ORF1ab/nsp931Y31XtaCtaA11AT.10.005128
ORF1ab/nsp931Y31YtaCtaT11AW.10.003049
ORF1ab/nsp931Y31XtaCtaA11AY.1000.000046
ORF1ab/nsp931Y31TTAcACc11AY.1010.00049
ORF1ab/nsp931Y31YtaCtaT11AY.1010.00049
ORF1ab/nsp931Y31XtaCtaA11AY.1030.000006
ORF1ab/nsp931Y31YtaCtaT11AY.1070.000466
ORF1ab/nsp931Y31delTAC---11AY.1110.000183
ORF1ab/nsp931Y31YtaCtaT11AY.1110.000183
ORF1ab/nsp931Y31YtaCtaT11AY.1130.000142
ORF1ab/nsp931Y31YtaCtaT11AY.1160.000287
ORF1ab/nsp931Y31YtaCtaT11AY.130.000161
ORF1ab/nsp931Y31XtaCtaA11AY.160.00038
ORF1ab/nsp931Y31YtaCtaT11AY.16.10.00047
ORF1ab/nsp931Y31XtaCtaA11AY.20.000356
ORF1ab/nsp931Y31XtaCtaA11AY.250.000006
ORF1ab/nsp931Y31YtaCtaT11AY.300.000396
ORF1ab/nsp931Y31YtaCtaT11AY.350.000233
ORF1ab/nsp931Y31YtaCtaT11AY.370.000316
ORF1ab/nsp931Y31YtaCtaT11AY.380.000499
ORF1ab/nsp931Y31XtaCtaA11AY.390.000025
ORF1ab/nsp931Y31HTacCac11AY.40.000002
ORF1ab/nsp931Y31XtaCtaA11AY.40.000002
ORF1ab/nsp931Y31LTAcCTc11AY.40.000002
ORF1ab/nsp931Y31XtaCtaA11AY.4.10.000737
ORF1ab/nsp931Y31YtaCtaT11AY.4.2.10.000149
ORF1ab/nsp931Y31DTaCGaT11AY.420.00004
ORF1ab/nsp931Y31XtaCtaA11AY.460.000104
ORF1ab/nsp931Y31YtaCtaT11AY.46.30.000934
ORF1ab/nsp931Y31XtaCtaA11AY.46.50.000198
ORF1ab/nsp931Y31XtaCtaA11AY.5.30.000337
ORF1ab/nsp931Y31YtaCtaT11AY.550.000917
ORF1ab/nsp931Y31YtaCtaT11AY.570.000656
ORF1ab/nsp931Y31YtaCtaT11AY.590.00053
ORF1ab/nsp931Y31YtaCtaT11AY.700.000209
ORF1ab/nsp931Y31YtaCtaT11AY.710.000475
ORF1ab/nsp931Y31YtaCtaT11AY.730.000665
ORF1ab/nsp931Y31YtaCtaT11AY.740.000116
ORF1ab/nsp931Y31YtaCtaT11AY.800.001129
ORF1ab/nsp931Y31XtaCtaA11AY.9.10.000084
ORF1ab/nsp931Y31YtaCtaT11AY.970.001701
ORF1ab/nsp931Y31XtaCtaA11AY.98.10.000048
ORF1ab/nsp931Y31XtaCtaA11B0.000128
ORF1ab/nsp931Y31HTacCac11B.10.000009
ORF1ab/nsp931Y31delTAC---11B.1.1.1390.022727
ORF1ab/nsp931Y31YtaCtaT11B.1.1.1910.004762
ORF1ab/nsp931Y31YtaCtaT11B.1.1.1980.001468
ORF1ab/nsp931Y31YtaCtaT11B.1.1.2160.00089
ORF1ab/nsp931Y31XtaCtaA11B.1.1.2200.001859
ORF1ab/nsp931Y31YtaCtaT11B.1.1.2220.000204
ORF1ab/nsp931Y31YtaCtaT11B.1.1.2940.001266
ORF1ab/nsp931Y31YtaCtaT11B.1.1.3060.000438
ORF1ab/nsp931Y31YtaCtaT11B.1.1.3160.000925
ORF1ab/nsp931Y31YtaCtaT11B.1.1.3170.000412
ORF1ab/nsp931Y31delTAC---11B.1.1.3480.000796
ORF1ab/nsp931Y31YtaCtaT11B.1.1.3540.004386
ORF1ab/nsp931Y31YtaCtaT11B.1.1.4010.066667
ORF1ab/nsp931Y31XtaCtaA11B.1.1.4090.002833
ORF1ab/nsp931Y31XtaCtaA11B.1.1.4190.007407
ORF1ab/nsp931Y31YtaCtaT11B.1.1.4840.1
ORF1ab/nsp931Y31YtaCtaT11B.1.1.5230.001563
ORF1ab/nsp931Y31HTacCac11B.1.1.70.000001
ORF1ab/nsp931Y31delTAC---11B.1.1.70.000001
ORF1ab/nsp931Y31YtaCtaT11B.1.1280.000635
ORF1ab/nsp931Y31YtaCtaT11B.1.1420.002899
ORF1ab/nsp931Y31XtaCtaA11B.1.1600.000031
ORF1ab/nsp931Y31YtaCtaT11B.1.160.140.002119
ORF1ab/nsp931Y31YtaCtaT11B.1.1700.00431
ORF1ab/nsp931Y31CtActGc11B.1.1770.000013
ORF1ab/nsp931Y31XtaCtaA11B.1.1770.000013
ORF1ab/nsp931Y31XtaCtaA11B.1.177.170.000821
ORF1ab/nsp931Y31YtaCtaT11B.1.177.180.00116
ORF1ab/nsp931Y31YtaCtaT11B.1.177.210.000076
ORF1ab/nsp931Y31YtaCtaT11B.1.177.570.000281
ORF1ab/nsp931Y31YtaCtaT11B.1.177.690.001484
ORF1ab/nsp931Y31XtaCtaA11B.1.177.730.000566
ORF1ab/nsp931Y31YtaCtaT11B.1.177.750.001041
ORF1ab/nsp931Y31YtaCtaT11B.1.177.830.001481
ORF1ab/nsp931Y31YtaCtaT11B.1.1790.003759
ORF1ab/nsp931Y31XtaCtaA11B.1.20.000009
ORF1ab/nsp931Y31YtaCtaT11B.1.2140.003663
ORF1ab/nsp931Y31YtaCtaT11B.1.2410.000812
ORF1ab/nsp931Y31HTacCac11B.1.2430.00007
ORF1ab/nsp931Y31XtaCtaA11B.1.258.170.000104
ORF1ab/nsp931Y31XtaCtaA11B.1.2600.003344
ORF1ab/nsp931Y31delTAC---11B.1.3110.000275
ORF1ab/nsp931Y31YtaCtaT11B.1.3110.000275
ORF1ab/nsp931Y31YtaCtaT11B.1.351.30.000876
ORF1ab/nsp931Y31YtaCtaT11B.1.36.170.000494
ORF1ab/nsp931Y31YtaCtaT11B.1.36.370.002778
ORF1ab/nsp931Y31YtaCtaT11B.1.3670.000792
ORF1ab/nsp931Y31YtaCtaT11B.1.3690.000285
ORF1ab/nsp931Y31YtaCtaT11B.1.3750.00082
ORF1ab/nsp931Y31YtaCtaT11B.1.4270.00005
ORF1ab/nsp931Y31YtaCtaT11B.1.4330.003195
ORF1ab/nsp931Y31YtaCtaT11B.1.466.20.000391
ORF1ab/nsp931Y31XtaCtaA11B.1.5250.000113
ORF1ab/nsp931Y31YtaCtaT11B.1.5510.00129
ORF1ab/nsp931Y31XtaCtaA11B.1.5580.004566
ORF1ab/nsp931Y31DTacGac11B.1.617.20.000004
ORF1ab/nsp931Y31XtaCtaA11B.1.6180.004032
ORF1ab/nsp931Y31YtaCtaT11B.1.6190.000871
ORF1ab/nsp931Y31YtaCtaT11B.1.6200.000946
ORF1ab/nsp931Y31YtaCtaT11B.1.6270.00202
ORF1ab/nsp931Y31YtaCtaT11B.1.6360.006711
ORF1ab/nsp931Y31YtaCtaT11B.1.910.002075
ORF1ab/nsp931Y31YtaCtaT11B.300.014706
ORF1ab/nsp931Y31YtaCtaT11B.40.002208
ORF1ab/nsp931Y31YtaCtaT11C.10.002392
ORF1ab/nsp931Y31XtaCtaA11C.350.000774
ORF1ab/nsp931Y31YtaCtaT11C.360.000911
ORF1ab/nsp931Y31XtaCtaA11D.20.000075
ORF1ab/nsp931Y31delTAC---11D.20.000075
ORF1ab/nsp931Y31YtaCtaT11D.20.000075
ORF1ab/nsp931Y31delTAC---11N.40.004255
ORF1ab/nsp931Y31delTAC---11P.1.10.000318
ORF1ab/nsp931Y31XtaCtaA11P.1.10.10.00813
ORF1ab/nsp931Y31YtaCtaT11R.10.00009