CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 28 | A28A | A4168A | syn | gcG | gcT | 5380 | 3301 | 0.613569 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28A | A4168A | syn | gcG | gcA | 5380 | 2041 | 0.379368 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28A | A4168A | syn | gcG | gcC | 5380 | 38 | 0.0070632 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28V | A4168V | nonsyn | gCg | gTg | 832 | 830 | 0.997596 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28V | A4168V | nonsyn | gCG | gTA | 832 | 2 | 0.00240385 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28T | A4168T | nonsyn | Gcg | Acg | 61 | 61 | 1 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28S | A4168S | nonsyn | Gcg | Tcg | 16 | 15 | 0.9375 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28S | A4168S | nonsyn | GcG | TcT | 16 | 1 | 0.0625 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28del | A4168del | del | GCG | --- | 9 | 9 | 1 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28del1 | A4168del1 | del | gCg | g-g | 4 | 2 | 0.5 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28del1 | A4168del1 | del | gcG | gc- | 4 | 1 | 0.25 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28del1 | A4168del1 | del | gCG | gT- | 4 | 1 | 0.25 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28E | A4168E | nonsyn | gCg | gAg | 3 | 2 | 0.666667 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28E | A4168E | nonsyn | gCG | gAA | 3 | 1 | 0.333333 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28G | A4168G | nonsyn | gCg | gGg | 2 | 2 | 1 | 12767-12769 |
ORF1ab/nsp9 | 28 | A28I | A4168I | nonsyn | GCG | ATC | 1 | 1 | 1 | 12767-12769 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 3301 | 5380 | All | 0.000631 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2041 | 5380 | All | 0.00039 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcC | 38 | 5380 | All | 0.000007 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1133 | 1352 | B.1.617.2 | 0.004266 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 204 | 1352 | B.1.617.2 | 0.000768 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcC | 15 | 1352 | B.1.617.2 | 0.000056 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 830 | 832 | All | 0.000159 |
ORF1ab/nsp9 | 28 | A28V | gCG | gTA | 2 | 832 | All | 0 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 337 | 487 | B.1.1.7 | 0.000302 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 148 | 487 | B.1.1.7 | 0.000132 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcC | 2 | 487 | B.1.1.7 | 0.000002 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 287 | 396 | AY.43 | 0.001272 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 109 | 396 | AY.43 | 0.000483 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 361 | 361 | AY.6 | 0.014847 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 323 | 324 | B.1.1.7 | 0.000289 |
ORF1ab/nsp9 | 28 | A28V | gCG | gTA | 1 | 324 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 155 | 226 | AY.4 | 0.000241 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 71 | 226 | AY.4 | 0.000111 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 168 | 168 | B.1.1.229 | 0.965517 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 130 | 141 | AY.47 | 0.004044 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 11 | 141 | AY.47 | 0.000342 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 135 | 135 | B.1.177.28 | 1 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 120 | 120 | AY.4.5 | 0.012899 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 60 | 101 | AY.103 | 0.000373 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 41 | 101 | AY.103 | 0.000255 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 68 | 89 | AY.44 | 0.000414 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 21 | 89 | AY.44 | 0.000128 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 76 | 80 | B.1.351 | 0.002259 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 4 | 80 | B.1.351 | 0.000119 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 75 | 75 | B.1.577 | 0.051546 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 38 | 73 | AY.20 | 0.001477 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 35 | 73 | AY.20 | 0.00136 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 69 | 72 | P.2 | 0.012878 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 3 | 72 | P.2 | 0.00056 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 56 | 69 | B.1 | 0.000513 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 13 | 69 | B.1 | 0.000119 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 38 | 64 | AY.25 | 0.000229 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 26 | 64 | AY.25 | 0.000156 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 61 | 61 | All | 0.000012 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 59 | 61 | B.1.177 | 0.000777 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 61 | B.1.177 | 0.000026 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 53 | 59 | P.1 | 0.000835 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 6 | 59 | P.1 | 0.000095 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 38 | 56 | B.1.2 | 0.000335 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 18 | 56 | B.1.2 | 0.000158 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 54 | 55 | AY.103 | 0.000335 |
ORF1ab/nsp9 | 28 | A28V | gCG | gTA | 1 | 55 | AY.103 | 0.000006 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 53 | 55 | AY.34 | 0.005139 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 55 | AY.34 | 0.000194 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 52 | 52 | B.1.526 | 0.001222 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 50 | 50 | B.1.1.28 | 0.015562 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 49 | 49 | AY.25 | 0.000295 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 46 | 47 | B.1.526 | 0.001081 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 47 | B.1.526 | 0.000024 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 26 | 46 | AY.3 | 0.000259 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 18 | 46 | AY.3 | 0.000179 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcC | 2 | 46 | AY.3 | 0.00002 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 46 | 46 | B.1.399 | 0.088975 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 40 | 40 | P.1 | 0.00063 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 39 | 39 | B.1.1.189 | 0.059002 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 30 | 36 | AY.102 | 0.000795 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 6 | 36 | AY.102 | 0.000159 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 36 | 36 | B.1.617.2 | 0.000136 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 35 | 35 | AY.3 | 0.000348 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 28 | 34 | B.1.1 | 0.000508 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 5 | 34 | B.1.1 | 0.000091 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcC | 1 | 34 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 28 | 33 | B.1.1.519 | 0.001112 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 5 | 33 | B.1.1.519 | 0.000199 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 32 | 32 | AY.44 | 0.000195 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 17 | 29 | AY.98 | 0.001343 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 12 | 29 | AY.98 | 0.000948 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 21 | 27 | B.1.258 | 0.001397 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 6 | 27 | B.1.258 | 0.000399 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 24 | 27 | B.1.429 | 0.000565 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 27 | B.1.429 | 0.000047 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcC | 1 | 27 | B.1.429 | 0.000024 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 15 | 26 | AY.39 | 0.000371 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 9 | 26 | AY.39 | 0.000222 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcC | 2 | 26 | AY.39 | 0.000049 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 23 | 23 | L.3 | 0.08156 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 22 | 22 | B.1.243 | 0.001531 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 16 | 19 | AY.33 | 0.001068 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 3 | 19 | AY.33 | 0.0002 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 18 | 18 | B.1.120 | 0.138462 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 9 | 17 | AY.46 | 0.000937 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 8 | 17 | AY.46 | 0.000833 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 17 | 17 | AY.46.6 | 0.001228 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 16 | 17 | C.37 | 0.001857 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 17 | C.37 | 0.000116 |
ORF1ab/nsp9 | 28 | A28S | Gcg | Tcg | 15 | 16 | All | 0.000003 |
ORF1ab/nsp9 | 28 | A28S | GcG | TcT | 1 | 16 | All | 0 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 11 | 16 | AY.9.1 | 0.000921 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 5 | 16 | AY.9.1 | 0.000419 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 16 | 16 | P.1.7 | 0.005109 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 15 | 15 | B.1.637 | 0.001096 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 13 | 14 | B.1.1.39 | 0.006626 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 14 | B.1.1.39 | 0.00051 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 13 | 13 | B.1.1.1 | 0.004247 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 12 | 12 | AY.39 | 0.000297 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 12 | 12 | B.1.1.434 | 0.004183 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcC | 10 | 11 | AY.100 | 0.00046 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 11 | AY.100 | 0.000046 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 10 | 10 | P.1.10 | 0.002695 |
ORF1ab/nsp9 | 28 | A28del | GCG | --- | 9 | 9 | All | 0.000002 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 8 | 9 | AY.24 | 0.003448 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 9 | AY.24 | 0.000431 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 8 | 9 | AY.29 | 0.000126 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 9 | AY.29 | 0.000016 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 8 | 9 | B.1.1.222 | 0.001632 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 9 | B.1.1.222 | 0.000204 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 9 | 9 | B.1.1.372 | 0.006198 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 8 | 9 | B.1.36 | 0.001167 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 9 | B.1.36 | 0.000146 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 8 | 8 | AY.111 | 0.001465 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 8 | 8 | AY.39.2 | 0.012327 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 4 | 8 | AY.5 | 0.000083 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 8 | AY.5 | 0.000041 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcC | 2 | 8 | AY.5 | 0.000041 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 5 | 7 | AY.23 | 0.000349 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 7 | AY.23 | 0.000139 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 7 | 7 | AY.52 | 0.0057 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 6 | 7 | AY.53 | 0.001725 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 7 | AY.53 | 0.000288 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 3 | 7 | AY.99.2 | 0.000276 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcC | 2 | 7 | AY.99.2 | 0.000184 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 7 | AY.99.2 | 0.000184 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 5 | 7 | Q.8 | 0.000825 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 7 | Q.8 | 0.00033 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 4 | 6 | AY.119 | 0.000141 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 6 | AY.119 | 0.000071 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 5 | 6 | AY.42 | 0.000201 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 6 | AY.42 | 0.00004 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 5 | 6 | AY.61 | 0.000524 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 6 | AY.61 | 0.000105 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 6 | 6 | AY.70 | 0.001251 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 5 | 6 | AY.74 | 0.000578 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 6 | AY.74 | 0.000116 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 4 | 6 | B | 0.000511 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 6 | B | 0.000256 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 6 | 6 | B.1.1.302 | 0.012448 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 6 | 6 | B.1.1.523 | 0.009375 |
ORF1ab/nsp9 | 28 | A28S | Gcg | Tcg | 5 | 6 | B.1.1.7 | 0.000004 |
ORF1ab/nsp9 | 28 | A28S | GcG | TcT | 1 | 6 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 5 | 6 | B.1.617.1 | 0.000645 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 6 | B.1.617.1 | 0.000129 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 4 | 5 | AY.117 | 0.000338 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 5 | AY.117 | 0.000085 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 4 | 5 | AY.98.1 | 0.000194 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 5 | AY.98.1 | 0.000048 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 3 | 5 | B.1.1.277 | 0.002276 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 5 | B.1.1.277 | 0.001517 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 5 | 5 | B.1.1.54 | 0.015106 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 5 | 5 | B.1.177.46 | 0.004591 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 5 | 5 | B.1.456 | 0.01634 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp9 | 28 | A28del1 | gCg | g-g | 2 | 4 | All | 0 |
ORF1ab/nsp9 | 28 | A28del1 | gcG | gc- | 1 | 4 | All | 0 |
ORF1ab/nsp9 | 28 | A28del1 | gCG | gT- | 1 | 4 | All | 0 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 4 | 4 | AQ.1 | 0.285714 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 4 | 4 | AY.22 | 0.008368 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 3 | 4 | AY.35 | 0.000699 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 4 | AY.35 | 0.000233 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 4 | AY.4.2 | 0.000043 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 4 | AY.4.2 | 0.000043 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 3 | 4 | B.1.427 | 0.000151 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 4 | B.1.427 | 0.00005 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 4 | 4 | B.1.499 | 0.004202 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 4 | 4 | B.1.582 | 0.001963 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 3 | 3 | AE.4 | 0.130435 |
ORF1ab/nsp9 | 28 | A28E | gCg | gAg | 2 | 3 | All | 0 |
ORF1ab/nsp9 | 28 | A28E | gCG | gAA | 1 | 3 | All | 0 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 3 | AY.3.1 | 0.000171 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 3 | AY.3.1 | 0.000085 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 3 | AY.84 | 0.000875 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 3 | AY.84 | 0.000437 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 3 | AY.96 | 0.004149 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 3 | AY.96 | 0.002075 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 3 | 3 | B.1.1.226 | 0.017442 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 3 | 3 | B.1.1.232 | 0.005445 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 3 | 3 | B.1.170 | 0.012931 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 3 | B.1.240 | 0.000431 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 3 | B.1.240 | 0.000216 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 3 | B.1.396 | 0.001411 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 3 | B.1.396 | 0.000706 |
ORF1ab/nsp9 | 28 | A28S | Gcg | Tcg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 3 | P.1.1 | 0.000635 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 3 | P.1.1 | 0.000318 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 3 | P.1.14 | 0.000096 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 3 | P.1.14 | 0.000048 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp9 | 28 | A28G | gCg | gGg | 2 | 2 | All | 0 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 2 | AY.16.1 | 0.00047 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 2 | AY.16.1 | 0.00047 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 2 | AY.37 | 0.000316 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 2 | AY.37 | 0.000316 |
ORF1ab/nsp9 | 28 | A28S | Gcg | Tcg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp9 | 28 | A28S | Gcg | Tcg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp9 | 28 | A28E | gCg | gAg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 2 | B.1.1.288 | 0.003831 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 2 | B.1.160.32 | 0.008584 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 2 | B.1.177.21 | 0.000076 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 2 | B.1.177.21 | 0.000076 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 2 | B.1.36.29 | 0.000517 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 2 | B.1.36.29 | 0.000517 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | B.1.465 | 0.007605 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | B.1.567 | 0.006667 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp9 | 28 | A28del1 | gCg | g-g | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 2 | 2 | B.1.631 | 0.006734 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 2 | 2 | P.1.17.1 | 0.00175 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp9 | 28 | A28I | GCG | ATC | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp9 | 28 | A28G | gCg | gGg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp9 | 28 | A28del | GCG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp9 | 28 | A28del1 | gcG | gc- | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp9 | 28 | A28S | Gcg | Tcg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp9 | 28 | A28S | Gcg | Tcg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp9 | 28 | A28del | GCG | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp9 | 28 | A28del | GCG | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp9 | 28 | A28E | gCG | gAA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp9 | 28 | A28del | GCG | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp9 | 28 | A28I | GCG | ATC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp9 | 28 | A28del1 | gCG | gT- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp9 | 28 | A28del | GCG | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp9 | 28 | A28del | GCG | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.1.463 | 0.0625 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp9 | 28 | A28G | gCg | gGg | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.151 | 0.011111 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp9 | 28 | A28del | GCG | --- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp9 | 28 | A28S | Gcg | Tcg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp9 | 28 | A28T | Gcg | Acg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 28 | A28del | GCG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp9 | 28 | A28del | GCG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcA | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp9 | 28 | A28A | gcG | gcT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp9 | 28 | A28V | gCg | gTg | 1 | 1 | Q.5 | 0.016949 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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