CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 25

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp925D25GD4165GnonsyngAtgGt7447430.99865612758-12760
ORF1ab/nsp925D25GD4165GnonsyngATgGC74410.0013440912758-12760
ORF1ab/nsp925D25DD4165DsyngaTgaC547547112758-12760
ORF1ab/nsp925D25ND4165NnonsynGatAat172172112758-12760
ORF1ab/nsp925D25AD4165AnonsyngAtgCt135135112758-12760
ORF1ab/nsp925D25delD4165deldelGAT---5252112758-12760
ORF1ab/nsp925D25YD4165YnonsynGatTat4949112758-12760
ORF1ab/nsp925D25ED4165EnonsyngaTgaA22160.72727312758-12760
ORF1ab/nsp925D25ED4165EnonsyngaTgaG2260.27272712758-12760
ORF1ab/nsp925D25del2D4165del2delGAt--t1111112758-12760
ORF1ab/nsp925D25VD4165VnonsyngAtgTt66112758-12760
ORF1ab/nsp925D25HD4165HnonsynGatCat650.83333312758-12760
ORF1ab/nsp925D25HD4165HnonsynGaTCaC610.16666712758-12760
ORF1ab/nsp925D25del1D4165del1delGat-at310.33333312758-12760
ORF1ab/nsp925D25del1D4165del1delgAtg-t310.33333312758-12760
ORF1ab/nsp925D25del1D4165del1delgaTga-310.33333312758-12760
ORF1ab/nsp925D25TD4165TnonsynGATACA11112758-12760

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp925D25GgAtgGt743744All0.000142
ORF1ab/nsp925D25GgATgGC1744All0
ORF1ab/nsp925D25DgaTgaC547547All0.000105
ORF1ab/nsp925D25GgAtgGt479479B.1.2360.983573
ORF1ab/nsp925D25DgaTgaC250250B.1.1.70.000224
ORF1ab/nsp925D25NGatAat172172All0.000033
ORF1ab/nsp925D25AgAtgCt135135All0.000026
ORF1ab/nsp925D25DgaTgaC8989AY.120.10.028571
ORF1ab/nsp925D25NGatAat8585AY.910.062089
ORF1ab/nsp925D25AgAtgCt8181AY.40.000126
ORF1ab/nsp925D25DgaTgaC6565B.1.1.3740.154394
ORF1ab/nsp925D25delGAT---5252All0.00001
ORF1ab/nsp925D25YGatTat4949All0.000009
ORF1ab/nsp925D25GgAtgGt4444AY.260.001246
ORF1ab/nsp925D25GgAtgGt3131B.1.1180.208054
ORF1ab/nsp925D25EgaTgaA1622All0.000003
ORF1ab/nsp925D25EgaTgaG622All0.000001
ORF1ab/nsp925D25NGatAat2121B.1.1.70.000019
ORF1ab/nsp925D25AgAtgCt1616AY.260.000453
ORF1ab/nsp925D25GgAtgGt1516B.10.000137
ORF1ab/nsp925D25GgATgGC116B.10.000009
ORF1ab/nsp925D25GgAtgGt1616B.1.1.70.000014
ORF1ab/nsp925D25GgAtgGt1616B.1.1580.380952
ORF1ab/nsp925D25GgAtgGt1515AY.40.000023
ORF1ab/nsp925D25NGatAat1313AY.40.00002
ORF1ab/nsp925D25GgAtgGt1212B.1.617.20.000045
ORF1ab/nsp925D25del2GAt--t1111All0.000002
ORF1ab/nsp925D25delGAT---1111AY.750.000616
ORF1ab/nsp925D25YGatTat1111B.1.1.70.00001
ORF1ab/nsp925D25DgaTgaC1010AY.30.000099
ORF1ab/nsp925D25DgaTgaC1010AY.40.000016
ORF1ab/nsp925D25DgaTgaC1010B.1.617.20.000038
ORF1ab/nsp925D25YGatTat1010P.10.000158
ORF1ab/nsp925D25DgaTgaC99AY.430.00004
ORF1ab/nsp925D25DgaTgaC99B.1.20.000079
ORF1ab/nsp925D25GgAtgGt99P.10.000142
ORF1ab/nsp925D25GgAtgGt88B.1.1770.000105
ORF1ab/nsp925D25DgaTgaC88B.1.3510.000238
ORF1ab/nsp925D25GgAtgGt77AY.440.000043
ORF1ab/nsp925D25AgAtgCt77B.1.1.70.000006
ORF1ab/nsp925D25delGAT---77B.1.1600.000218
ORF1ab/nsp925D25VgAtgTt66All0.000001
ORF1ab/nsp925D25HGatCat56All0.000001
ORF1ab/nsp925D25HGaTCaC16All0
ORF1ab/nsp925D25GgAtgGt66AY.200.000233
ORF1ab/nsp925D25del2GAt--t66AY.250.000036
ORF1ab/nsp925D25delGAT---66AY.250.000036
ORF1ab/nsp925D25NGatAat66AY.250.000036
ORF1ab/nsp925D25NGatAat66B.10.000055
ORF1ab/nsp925D25delGAT---66B.1.1770.000079
ORF1ab/nsp925D25GgAtgGt66B.1.177.430.008863
ORF1ab/nsp925D25GgAtgGt66B.1.20.000053
ORF1ab/nsp925D25DgaTgaC55AY.1020.000133
ORF1ab/nsp925D25YGatTat55AY.40.000008
ORF1ab/nsp925D25DgaTgaC55B.1.10.000091
ORF1ab/nsp925D25DgaTgaC55B.1.177.870.003639
ORF1ab/nsp925D25GgAtgGt55C.36.30.002836
ORF1ab/nsp925D25DgaTgaC44AY.140.000352
ORF1ab/nsp925D25DgaTgaC44AY.250.000024
ORF1ab/nsp925D25NGatAat44AY.440.000024
ORF1ab/nsp925D25DgaTgaC44AY.440.000024
ORF1ab/nsp925D25GgAtgGt44AY.610.000419
ORF1ab/nsp925D25YGatTat44B.10.000037
ORF1ab/nsp925D25DgaTgaC44B.10.000037
ORF1ab/nsp925D25NGatAat44B.1.1600.000125
ORF1ab/nsp925D25AgAtgCt44B.1.20.000035
ORF1ab/nsp925D25DgaTgaC44B.1.2220.006768
ORF1ab/nsp925D25del1gaTga-13All0
ORF1ab/nsp925D25del1gAtg-t13All0
ORF1ab/nsp925D25del1Gat-at13All0
ORF1ab/nsp925D25DgaTgaC33AY.98.10.000145
ORF1ab/nsp925D25AgAtgCt33B.10.000027
ORF1ab/nsp925D25EgaTgaA33B.10.000027
ORF1ab/nsp925D25GgAtgGt33B.1.10.000054
ORF1ab/nsp925D25DgaTgaC33B.1.1.280.000934
ORF1ab/nsp925D25del2GAt--t33B.1.1.70.000003
ORF1ab/nsp925D25DgaTgaC33B.1.1600.000094
ORF1ab/nsp925D25GgAtgGt33B.1.2580.0002
ORF1ab/nsp925D25AgAtgCt33B.1.360.000438
ORF1ab/nsp925D25GgAtgGt33B.1.4290.000071
ORF1ab/nsp925D25DgaTgaC33B.1.5070.033708
ORF1ab/nsp925D25AgAtgCt33B.1.617.20.000011
ORF1ab/nsp925D25YGatTat33B.1.617.20.000011
ORF1ab/nsp925D25NGatAat33B.1.6210.000266
ORF1ab/nsp925D25GgAtgGt22AY.1000.000092
ORF1ab/nsp925D25YGatTat22AY.1020.000053
ORF1ab/nsp925D25GgAtgGt22AY.1030.000012
ORF1ab/nsp925D25DgaTgaC22AY.1030.000012
ORF1ab/nsp925D25DgaTgaC22AY.1180.000125
ORF1ab/nsp925D25GgAtgGt22AY.1190.000071
ORF1ab/nsp925D25GgAtgGt22AY.1200.000074
ORF1ab/nsp925D25DgaTgaC22AY.1200.000074
ORF1ab/nsp925D25DgaTgaC22AY.120.2.10.000997
ORF1ab/nsp925D25NGatAat22AY.200.000078
ORF1ab/nsp925D25GgAtgGt22AY.250.000012
ORF1ab/nsp925D25DgaTgaC22AY.260.000057
ORF1ab/nsp925D25DgaTgaC22AY.270.000129
ORF1ab/nsp925D25NGatAat22AY.30.00002
ORF1ab/nsp925D25DgaTgaC22AY.3.10.000171
ORF1ab/nsp925D25DgaTgaC22AY.390.000049
ORF1ab/nsp925D25delGAT---22AY.40.000003
ORF1ab/nsp925D25EgaTgaA12AY.40.000002
ORF1ab/nsp925D25EgaTgaG12AY.40.000002
ORF1ab/nsp925D25DgaTgaC22AY.4.20.000043
ORF1ab/nsp925D25GgAtgGt22AY.4.50.000215
ORF1ab/nsp925D25GgAtgGt22AY.420.00008
ORF1ab/nsp925D25YGatTat22AY.430.000009
ORF1ab/nsp925D25GgAtgGt22AY.470.000062
ORF1ab/nsp925D25GgAtgGt22AY.50.000041
ORF1ab/nsp925D25GgAtgGt22B0.000256
ORF1ab/nsp925D25EgaTgaA22B.1.1.1610.007067
ORF1ab/nsp925D25EgaTgaA22B.1.1.3010.002358
ORF1ab/nsp925D25delGAT---22B.1.1.390.001019
ORF1ab/nsp925D25DgaTgaC22B.1.1770.000026
ORF1ab/nsp925D25VgAtgTt22B.1.177.540.001213
ORF1ab/nsp925D25AgAtgCt22B.1.2840.026316
ORF1ab/nsp925D25YGatTat22B.1.3510.000059
ORF1ab/nsp925D25GgAtgGt22B.1.36.390.004435
ORF1ab/nsp925D25AgAtgCt22B.1.36.80.002
ORF1ab/nsp925D25NGatAat22B.1.4290.000047
ORF1ab/nsp925D25GgAtgGt22B.1.5760.001813
ORF1ab/nsp925D25delGAT---22B.1.617.20.000008
ORF1ab/nsp925D25NGatAat22C.370.000232
ORF1ab/nsp925D25NGatAat22P.10.000032
ORF1ab/nsp925D25GgAtgGt11A.210.00277
ORF1ab/nsp925D25GgAtgGt11AD.20.000219
ORF1ab/nsp925D25TGATACA11All0
ORF1ab/nsp925D25DgaTgaC11AY.1000.000046
ORF1ab/nsp925D25VgAtgTt11AY.1000.000046
ORF1ab/nsp925D25del1gAtg-t11AY.1020.000027
ORF1ab/nsp925D25VgAtgTt11AY.1030.000006
ORF1ab/nsp925D25delGAT---11AY.1110.000183
ORF1ab/nsp925D25GgAtgGt11AY.1160.000287
ORF1ab/nsp925D25DgaTgaC11AY.1170.000085
ORF1ab/nsp925D25AgAtgCt11AY.1190.000035
ORF1ab/nsp925D25DgaTgaC11AY.1190.000035
ORF1ab/nsp925D25YGatTat11AY.1210.000135
ORF1ab/nsp925D25GgAtgGt11AY.190.00114
ORF1ab/nsp925D25HGatCat11AY.200.000039
ORF1ab/nsp925D25AgAtgCt11AY.250.000006
ORF1ab/nsp925D25EgaTgaA11AY.250.000006
ORF1ab/nsp925D25YGatTat11AY.250.000006
ORF1ab/nsp925D25TGATACA11AY.250.000006
ORF1ab/nsp925D25NGatAat11AY.260.000028
ORF1ab/nsp925D25EgaTgaG11AY.29.10.000221
ORF1ab/nsp925D25GgAtgGt11AY.30.00001
ORF1ab/nsp925D25GgAtgGt11AY.3.10.000085
ORF1ab/nsp925D25DgaTgaC11AY.300.000396
ORF1ab/nsp925D25NGatAat11AY.360.000148
ORF1ab/nsp925D25NGatAat11AY.390.000025
ORF1ab/nsp925D25GgAtgGt11AY.390.000025
ORF1ab/nsp925D25YGatTat11AY.39.10.00004
ORF1ab/nsp925D25HGatCat11AY.40.000002
ORF1ab/nsp925D25delGAT---11AY.4.20.000022
ORF1ab/nsp925D25GgAtgGt11AY.400.000964
ORF1ab/nsp925D25DgaTgaC11AY.420.00004
ORF1ab/nsp925D25GgAtgGt11AY.430.000004
ORF1ab/nsp925D25AgAtgCt11AY.430.000004
ORF1ab/nsp925D25EgaTgaA11AY.430.000004
ORF1ab/nsp925D25del2GAt--t11AY.430.000004
ORF1ab/nsp925D25NGatAat11AY.430.000004
ORF1ab/nsp925D25AgAtgCt11AY.440.000006
ORF1ab/nsp925D25NGatAat11AY.46.50.000198
ORF1ab/nsp925D25delGAT---11AY.46.60.000072
ORF1ab/nsp925D25NGatAat11AY.480.000465
ORF1ab/nsp925D25HGatCat11AY.50.000021
ORF1ab/nsp925D25GgAtgGt11AY.5.30.000337
ORF1ab/nsp925D25delGAT---11AY.5.40.000277
ORF1ab/nsp925D25DgaTgaC11AY.540.000095
ORF1ab/nsp925D25AgAtgCt11AY.580.000907
ORF1ab/nsp925D25EgaTgaG11AY.60.000041
ORF1ab/nsp925D25NGatAat11AY.620.000436
ORF1ab/nsp925D25NGatAat11AY.640.000595
ORF1ab/nsp925D25DgaTgaC11AY.670.000464
ORF1ab/nsp925D25DgaTgaC11AY.750.000056
ORF1ab/nsp925D25NGatAat11AY.750.000056
ORF1ab/nsp925D25NGatAat11AY.880.000884
ORF1ab/nsp925D25AgAtgCt11AY.90.000068
ORF1ab/nsp925D25DgaTgaC11AY.90.000068
ORF1ab/nsp925D25delGAT---11AY.9.20.000037
ORF1ab/nsp925D25GgAtgGt11AY.9.20.000037
ORF1ab/nsp925D25NGatAat11AY.98.10.000048
ORF1ab/nsp925D25delGAT---11AY.990.001049
ORF1ab/nsp925D25del1gaTga-11B0.000128
ORF1ab/nsp925D25HGatCat11B.10.000009
ORF1ab/nsp925D25delGAT---11B.10.000009
ORF1ab/nsp925D25AgAtgCt11B.1.10.000018
ORF1ab/nsp925D25YGatTat11B.1.10.000018
ORF1ab/nsp925D25delGAT---11B.1.1.1390.022727
ORF1ab/nsp925D25NGatAat11B.1.1.1600.02381
ORF1ab/nsp925D25DgaTgaC11B.1.1.1610.003534
ORF1ab/nsp925D25GgAtgGt11B.1.1.1610.003534
ORF1ab/nsp925D25DgaTgaC11B.1.1.1860.003436
ORF1ab/nsp925D25AgAtgCt11B.1.1.1920.002309
ORF1ab/nsp925D25NGatAat11B.1.1.2140.000055
ORF1ab/nsp925D25GgAtgGt11B.1.1.2220.000204
ORF1ab/nsp925D25DgaTgaC11B.1.1.2220.000204
ORF1ab/nsp925D25NGatAat11B.1.1.2290.005747
ORF1ab/nsp925D25EgaTgaA11B.1.1.2670.010101
ORF1ab/nsp925D25delGAT---11B.1.1.280.000311
ORF1ab/nsp925D25AgAtgCt11B.1.1.3000.010753
ORF1ab/nsp925D25EgaTgaA11B.1.1.3070.002532
ORF1ab/nsp925D25GgAtgGt11B.1.1.330.000421
ORF1ab/nsp925D25delGAT---11B.1.1.3480.000796
ORF1ab/nsp925D25GgAtgGt11B.1.1.3720.000689
ORF1ab/nsp925D25GgAtgGt11B.1.1.470.005348
ORF1ab/nsp925D25GgAtgGt11B.1.1.4860.001577
ORF1ab/nsp925D25DgaTgaC11B.1.1.5190.00004
ORF1ab/nsp925D25HGaTCaC11B.1.1.5190.00004
ORF1ab/nsp925D25DgaTgaC11B.1.1.5230.001563
ORF1ab/nsp925D25GgAtgGt11B.1.1.580.005376
ORF1ab/nsp925D25VgAtgTt11B.1.1.70.000001
ORF1ab/nsp925D25EgaTgaG11B.1.1.70.000001
ORF1ab/nsp925D25delGAT---11B.1.1.70.000001
ORF1ab/nsp925D25del1Gat-at11B.1.1.70.000001
ORF1ab/nsp925D25GgAtgGt11B.1.1.700.000341
ORF1ab/nsp925D25GgAtgGt11B.1.1460.004237
ORF1ab/nsp925D25GgAtgGt11B.1.1600.000031
ORF1ab/nsp925D25GgAtgGt11B.1.177.230.003236
ORF1ab/nsp925D25GgAtgGt11B.1.177.440.000519
ORF1ab/nsp925D25GgAtgGt11B.1.177.500.004695
ORF1ab/nsp925D25NGatAat11B.1.20.000009
ORF1ab/nsp925D25GgAtgGt11B.1.2060.000816
ORF1ab/nsp925D25GgAtgGt11B.1.2340.000132
ORF1ab/nsp925D25DgaTgaC11B.1.2410.000812
ORF1ab/nsp925D25DgaTgaC11B.1.2430.00007
ORF1ab/nsp925D25YGatTat11B.1.2430.00007
ORF1ab/nsp925D25GgAtgGt11B.1.2430.00007
ORF1ab/nsp925D25delGAT---11B.1.2580.000067
ORF1ab/nsp925D25AgAtgCt11B.1.258.110.000396
ORF1ab/nsp925D25NGatAat11B.1.258.40.003448
ORF1ab/nsp925D25delGAT---11B.1.3110.000275
ORF1ab/nsp925D25VgAtgTt11B.1.3510.00003
ORF1ab/nsp925D25delGAT---11B.1.3510.00003
ORF1ab/nsp925D25DgaTgaC11B.1.36.310.001751
ORF1ab/nsp925D25EgaTgaA11B.1.36.80.001
ORF1ab/nsp925D25YGatTat11B.1.3990.001934
ORF1ab/nsp925D25GgAtgGt11B.1.4040.001302
ORF1ab/nsp925D25GgAtgGt11B.1.4270.00005
ORF1ab/nsp925D25YGatTat11B.1.4290.000024
ORF1ab/nsp925D25AgAtgCt11B.1.4530.003236
ORF1ab/nsp925D25AgAtgCt11B.1.5250.000113
ORF1ab/nsp925D25EgaTgaA11B.1.5960.000087
ORF1ab/nsp925D25YGatTat11B.1.617.10.000129
ORF1ab/nsp925D25HGatCat11B.1.617.20.000004
ORF1ab/nsp925D25EgaTgaG11B.1.617.20.000004
ORF1ab/nsp925D25NGatAat11B.1.617.20.000004
ORF1ab/nsp925D25NGatAat11B.1.6250.002353
ORF1ab/nsp925D25AgAtgCt11B.400.000364
ORF1ab/nsp925D25NGatAat11B.410.008
ORF1ab/nsp925D25EgaTgaA11B.550.00295
ORF1ab/nsp925D25EgaTgaA11B.610.005747
ORF1ab/nsp925D25GgAtgGt11C.230.005814
ORF1ab/nsp925D25AgAtgCt11C.370.000116
ORF1ab/nsp925D25YGatTat11D.20.000075
ORF1ab/nsp925D25DgaTgaC11D.20.000075
ORF1ab/nsp925D25NGatAat11D.20.000075
ORF1ab/nsp925D25delGAT---11N.40.004255
ORF1ab/nsp925D25DgaTgaC11P.10.000016
ORF1ab/nsp925D25delGAT---11P.10.000016
ORF1ab/nsp925D25YGatTat11P.1.140.000048
ORF1ab/nsp925D25GgAtgGt11P.1.150.000232
ORF1ab/nsp925D25EgaTgaG11P.20.000187
ORF1ab/nsp925D25DgaTgaC11Q.10.000126
ORF1ab/nsp925D25del2GAt--t11Q.20.000613