CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 21 | T21I | T4161I | nonsyn | aCt | aTt | 9338 | 9338 | 1 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21T | T4161T | syn | acT | acC | 1481 | 1091 | 0.736664 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21T | T4161T | syn | acT | acA | 1481 | 365 | 0.246455 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21T | T4161T | syn | acT | acG | 1481 | 25 | 0.0168805 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21N | T4161N | nonsyn | aCt | aAt | 603 | 603 | 1 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21A | T4161A | nonsyn | Act | Gct | 74 | 71 | 0.959459 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21A | T4161A | nonsyn | AcT | GcA | 74 | 2 | 0.027027 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21A | T4161A | nonsyn | AcT | GcG | 74 | 1 | 0.0135135 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21del | T4161del | del | ACT | --- | 34 | 34 | 1 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21P | T4161P | nonsyn | Act | Cct | 14 | 14 | 1 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21S | T4161S | nonsyn | aCt | aGt | 7 | 5 | 0.714286 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21S | T4161S | nonsyn | Act | Tct | 7 | 2 | 0.285714 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21K | T4161K | nonsyn | aCT | aAA | 1 | 1 | 1 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21L | T4161L | nonsyn | ACT | CTA | 1 | 1 | 1 | 12746-12748 |
ORF1ab/nsp9 | 21 | T21F | T4161F | nonsyn | ACt | TTt | 1 | 1 | 1 | 12746-12748 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 9338 | 9338 | All | 0.001786 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3655 | 3655 | AY.9 | 0.24706 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1091 | 1481 | All | 0.000209 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 365 | 1481 | All | 0.00007 |
ORF1ab/nsp9 | 21 | T21T | acT | acG | 25 | 1481 | All | 0.000005 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1422 | 1422 | B.1.1.7 | 0.001273 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1010 | 1010 | AY.4 | 0.001572 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 531 | 800 | B.1.1.7 | 0.000475 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 258 | 800 | B.1.1.7 | 0.000231 |
ORF1ab/nsp9 | 21 | T21T | acT | acG | 11 | 800 | B.1.1.7 | 0.00001 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 603 | 603 | All | 0.000115 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 576 | 576 | AY.98 | 0.045501 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 422 | 422 | B.1.617.2 | 0.001589 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 326 | 326 | AW.1 | 0.993902 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 267 | 267 | B.1.1.297 | 0.597315 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 182 | 182 | AY.42 | 0.007322 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 170 | 170 | AY.103 | 0.001056 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 108 | 108 | P.1 | 0.001701 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 97 | 97 | B.1.1.70 | 0.033083 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 92 | 92 | AY.43 | 0.000408 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 91 | 91 | AY.25 | 0.000547 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 87 | 87 | B.1.617.2 | 0.000328 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 85 | 85 | B.1.2 | 0.000748 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 81 | 81 | AY.102 | 0.002148 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 78 | 78 | AY.44 | 0.000475 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 71 | 74 | All | 0.000014 |
ORF1ab/nsp9 | 21 | T21A | AcT | GcA | 2 | 74 | All | 0 |
ORF1ab/nsp9 | 21 | T21A | AcT | GcG | 1 | 74 | All | 0 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 71 | 71 | AY.3 | 0.000706 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 71 | 71 | AY.75 | 0.003978 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 54 | 54 | B.1.177.12 | 0.008192 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 53 | 53 | B.1.1.7 | 0.000047 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 47 | 47 | C.37 | 0.005455 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 40 | 40 | AY.66 | 0.042781 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 39 | 39 | AY.102 | 0.001034 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 37 | 37 | B.1.429 | 0.000871 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 36 | 36 | B.1.177.81 | 0.006816 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 34 | 34 | All | 0.000007 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 33 | 33 | AY.46.4 | 0.005429 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 33 | 33 | B.1 | 0.000302 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 33 | 33 | B.1.1.214 | 0.00183 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 32 | 32 | B.1.1 | 0.000581 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 29 | 29 | AY.25 | 0.000174 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 28 | 28 | B.1.526 | 0.000658 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 24 | 24 | AY.44 | 0.000146 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 24 | 24 | B.1.1.417 | 0.064865 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 24 | 24 | B.1.160 | 0.000749 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 23 | 23 | AY.117 | 0.001944 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 23 | 23 | B.1.177 | 0.000303 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 21 | 21 | AY.29 | 0.000331 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 21 | 21 | AY.4.2 | 0.000455 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 20 | 20 | B.1.351 | 0.000595 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 19 | 19 | P.2 | 0.003546 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 18 | 18 | AY.13 | 0.002898 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 18 | 18 | AY.54 | 0.001716 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 17 | 17 | AY.98.1 | 0.000823 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 17 | 17 | AY.99.2 | 0.001567 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 17 | 17 | B.1.311 | 0.004668 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 16 | 16 | B.1.575 | 0.004854 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 15 | 15 | AG.1 | 1 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 15 | 15 | AY.39.1 | 0.000594 |
ORF1ab/nsp9 | 21 | T21P | Act | Cct | 14 | 14 | All | 0.000003 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 14 | 14 | AY.55 | 0.012844 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 13 | 14 | B.1.1 | 0.000236 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 14 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 14 | 14 | B.1.177.54 | 0.00849 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 14 | 14 | B.1.351 | 0.000416 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 13 | 13 | AY.113 | 0.001851 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 11 | 13 | AY.44 | 0.000067 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 13 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 21 | T21T | acT | acG | 1 | 13 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 13 | 13 | B.1.258.17 | 0.001352 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 13 | 13 | B.1.427 | 0.000656 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 11 | 12 | AY.43 | 0.000049 |
ORF1ab/nsp9 | 21 | T21T | acT | acG | 1 | 12 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 8 | 12 | B.1 | 0.000073 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 4 | 12 | B.1 | 0.000037 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 12 | 12 | P.1.14 | 0.000574 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 11 | 11 | AY.9.2 | 0.000404 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 8 | 11 | B.1.617.2 | 0.00003 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 2 | 11 | B.1.617.2 | 0.000008 |
ORF1ab/nsp9 | 21 | T21T | acT | acG | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 11 | 11 | B.1.623 | 0.005901 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 11 | 11 | P.1.15 | 0.002556 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 10 | 10 | AY.85 | 0.004272 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 9 | 9 | B.1.177.75 | 0.009365 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 9 | 9 | P.1.17 | 0.001456 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp9 | 21 | T21P | Act | Cct | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 4 | 8 | AY.4 | 0.000006 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 3 | 8 | AY.4 | 0.000005 |
ORF1ab/nsp9 | 21 | T21T | acT | acG | 1 | 8 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 8 | 8 | AY.75.1 | 0.001442 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 8 | 8 | B.1.1.214 | 0.000444 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 8 | 8 | B.1.177.57 | 0.002248 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 8 | 8 | P.1.16 | 0.002993 |
ORF1ab/nsp9 | 21 | T21S | aCt | aGt | 5 | 7 | All | 0.000001 |
ORF1ab/nsp9 | 21 | T21S | Act | Tct | 2 | 7 | All | 0 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 7 | 7 | AY.38 | 0.003495 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 7 | 7 | AY.59 | 0.003708 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 5 | 6 | AY.120 | 0.000186 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 6 | AY.120 | 0.000037 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 6 | 6 | AY.37 | 0.001896 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 6 | 6 | B.1.1.277 | 0.004552 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 6 | 6 | B.1.1.528 | 0.028846 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 5 | 6 | B.1.2 | 0.000044 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 6 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp9 | 21 | T21T | acT | acG | 5 | 6 | P.1 | 0.000079 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 6 | P.1 | 0.000016 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 4 | 5 | AY.4 | 0.000006 |
ORF1ab/nsp9 | 21 | T21A | AcT | GcA | 1 | 5 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 5 | 5 | B | 0.000639 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 5 | 5 | B.1.398 | 0.014881 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | B.1.1.153 | 0.004381 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | B.1.1.526 | 0.014184 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 4 | 4 | B.1.160.12 | 0.025641 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | B.1.499 | 0.004202 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 4 | 4 | P.1.13 | 0.003594 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | AY.19 | 0.003421 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp9 | 21 | T21T | acT | acG | 1 | 3 | AY.39 | 0.000025 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 3 | AY.39 | 0.000025 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 3 | AY.39 | 0.000025 |
ORF1ab/nsp9 | 21 | T21T | acT | acG | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 3 | 3 | B.1.1.10 | 0.003344 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 2 | 3 | B.1.258 | 0.000133 |
ORF1ab/nsp9 | 21 | T21T | acT | acG | 1 | 3 | B.1.258 | 0.000067 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 2 | 3 | B.1.526 | 0.000047 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 3 | B.1.526 | 0.000024 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | B.1.558 | 0.013699 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 3 | 3 | P.1.8 | 0.014354 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp9 | 21 | T21P | Act | Cct | 2 | 2 | B | 0.000256 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.1.118 | 0.020408 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 2 | 2 | B.1.1.227 | 0.008696 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp9 | 21 | T21A | AcT | GcA | 1 | 2 | B.1.1.335 | 0.012987 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 2 | B.1.1.335 | 0.012987 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 2 | 2 | B.1.1.376 | 0.011905 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp9 | 21 | T21S | Act | Tct | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 2 | 2 | B.1.1.71 | 0.012121 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp9 | 21 | T21S | aCt | aGt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.160.25 | 0.022222 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.337 | 0.011173 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.634 | 0.006849 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp9 | 21 | T21K | aCT | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 21 | T21L | ACT | CTA | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 21 | T21F | ACt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp9 | 21 | T21P | Act | Cct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 21 | T21S | aCt | aGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp9 | 21 | T21P | Act | Cct | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp9 | 21 | T21A | AcT | GcG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp9 | 21 | T21L | ACT | CTA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.1.347 | 0.018182 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp9 | 21 | T21F | ACt | TTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 21 | T21P | Act | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.14 | 0.017544 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp9 | 21 | T21P | Act | Cct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp9 | 21 | T21S | aCt | aGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 21 | T21T | acT | acC | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.321 | 0.034483 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.593 | 0.01087 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp9 | 21 | T21N | aCt | aAt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 21 | T21K | aCT | aAA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp9 | 21 | T21S | aCt | aGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp9 | 21 | T21A | Act | Gct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp9 | 21 | T21del | ACT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp9 | 21 | T21I | aCt | aTt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp9 | 21 | T21T | acT | acA | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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