CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 15 | A15A | A4155A | syn | gcT | gcG | 890 | 463 | 0.520225 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15A | A4155A | syn | gcT | gcC | 890 | 327 | 0.367416 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15A | A4155A | syn | gcT | gcA | 890 | 100 | 0.11236 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15V | A4155V | nonsyn | gCt | gTt | 115 | 115 | 1 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15T | A4155T | nonsyn | Gct | Act | 81 | 81 | 1 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15S | A4155S | nonsyn | Gct | Tct | 39 | 38 | 0.974359 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15S | A4155S | nonsyn | GcT | TcC | 39 | 1 | 0.025641 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15del | A4155del | del | GCT | --- | 33 | 33 | 1 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15D | A4155D | nonsyn | gCt | gAt | 8 | 8 | 1 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15del1 | A4155del1 | del | gCt | g-t | 4 | 1 | 0.25 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15del1 | A4155del1 | del | Gct | -ct | 4 | 1 | 0.25 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15del1 | A4155del1 | del | gcT | gc- | 4 | 1 | 0.25 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15del1 | A4155del1 | del | GCt | -Tt | 4 | 1 | 0.25 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15G | A4155G | nonsyn | gCt | gGt | 3 | 2 | 0.666667 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15G | A4155G | nonsyn | gCT | gGC | 3 | 1 | 0.333333 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15C | A4155C | nonsyn | GCT | TGC | 2 | 1 | 0.5 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15C | A4155C | nonsyn | GCt | TGt | 2 | 1 | 0.5 | 12728-12730 |
ORF1ab/nsp9 | 15 | A15del2 | A4155del2 | del | gCT | g-- | 1 | 1 | 1 | 12728-12730 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 463 | 890 | All | 0.000089 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 327 | 890 | All | 0.000063 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 100 | 890 | All | 0.000019 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 406 | 406 | B.1.625 | 0.955294 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 88 | 124 | B.1.1.7 | 0.000079 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 36 | 124 | B.1.1.7 | 0.000032 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 115 | 115 | All | 0.000022 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 81 | 81 | All | 0.000015 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 55 | 62 | AY.4 | 0.000086 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 4 | 62 | AY.4 | 0.000006 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 3 | 62 | AY.4 | 0.000005 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 38 | 39 | All | 0.000007 |
ORF1ab/nsp9 | 15 | A15S | GcT | TcC | 1 | 39 | All | 0 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 31 | 37 | B.1 | 0.000284 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 4 | 37 | B.1 | 0.000037 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 2 | 37 | B.1 | 0.000018 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 35 | 36 | B.1.258.17 | 0.003639 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 36 | B.1.258.17 | 0.000104 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 33 | 33 | All | 0.000006 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 30 | 30 | B.1.2 | 0.000264 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 22 | 25 | AY.103 | 0.000137 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 2 | 25 | AY.103 | 0.000012 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 1 | 25 | AY.103 | 0.000006 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 17 | 17 | AY.47 | 0.000529 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 12 | 14 | AY.25 | 0.000072 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 2 | 14 | AY.25 | 0.000012 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 7 | 13 | P.1 | 0.00011 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 5 | 13 | P.1 | 0.000079 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 1 | 13 | P.1 | 0.000016 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 12 | 12 | B.1.1.67 | 0.054795 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 10 | 11 | B.1.617.2 | 0.000038 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 9 | 9 | AY.109 | 0.006657 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp9 | 15 | A15D | gCt | gAt | 8 | 8 | All | 0.000002 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 7 | 7 | B.1.1.171 | 0.025735 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 7 | 7 | B.1.177.46 | 0.006428 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 4 | 6 | AY.44 | 0.000024 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 2 | 6 | AY.44 | 0.000012 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 4 | 6 | B.1.1 | 0.000073 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 2 | 6 | B.1.1 | 0.000036 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 4 | 5 | B.1.617.1 | 0.000516 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 5 | B.1.617.1 | 0.000129 |
ORF1ab/nsp9 | 15 | A15del1 | GCt | -Tt | 1 | 4 | All | 0 |
ORF1ab/nsp9 | 15 | A15del1 | gcT | gc- | 1 | 4 | All | 0 |
ORF1ab/nsp9 | 15 | A15del1 | Gct | -ct | 1 | 4 | All | 0 |
ORF1ab/nsp9 | 15 | A15del1 | gCt | g-t | 1 | 4 | All | 0 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp9 | 15 | A15D | gCt | gAt | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 4 | 4 | B.1.1.374 | 0.009501 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 4 | 4 | B.1.149 | 0.013699 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 3 | 4 | B.1.177 | 0.00004 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 4 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 3 | 4 | B.1.429 | 0.000071 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 4 | B.1.429 | 0.000024 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp9 | 15 | A15G | gCt | gGt | 2 | 3 | All | 0 |
ORF1ab/nsp9 | 15 | A15G | gCT | gGC | 1 | 3 | All | 0 |
ORF1ab/nsp9 | 15 | A15D | gCt | gAt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 2 | 3 | AY.3 | 0.00002 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 1 | 3 | AY.3 | 0.00001 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 3 | 3 | B.1.1.363 | 0.017964 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 3 | 3 | B.4.7 | 0.030303 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 2 | 2 | 0.111111 | |
ORF1ab/nsp9 | 15 | A15S | GcT | TcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 1 | 2 | 0.055556 | |
ORF1ab/nsp9 | 15 | A15C | GCt | TGt | 1 | 2 | 0.055556 | |
ORF1ab/nsp9 | 15 | A15C | GCT | TGC | 1 | 2 | 0.055556 | |
ORF1ab/nsp9 | 15 | A15G | gCT | gGC | 1 | 2 | 0.055556 | |
ORF1ab/nsp9 | 15 | A15G | gCt | gGt | 1 | 2 | 0.055556 | |
ORF1ab/nsp9 | 15 | A15C | GCt | TGt | 1 | 2 | All | 0 |
ORF1ab/nsp9 | 15 | A15C | GCT | TGC | 1 | 2 | All | 0 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | AK.2 | 0.045455 |
ORF1ab/nsp9 | 15 | A15del2 | gCT | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp9 | 15 | A15del1 | Gct | -ct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp9 | 15 | A15del1 | GCt | -Tt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 15 | A15D | gCt | gAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 15 | A15del1 | gCt | g-t | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp9 | 15 | A15del1 | gcT | gc- | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp9 | 15 | A15del2 | gCT | g-- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp9 | 15 | A15T | Gct | Act | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp9 | 15 | A15S | Gct | Tct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp9 | 15 | A15G | gCt | gGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 15 | A15V | gCt | gTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcG | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcC | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp9 | 15 | A15A | gcT | gcA | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp9 | 15 | A15del | GCT | --- | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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