CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 11

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp911Q11HQ4151HnonsyncaGcaT15959159460.99918512716-12718
ORF1ab/nsp911Q11HQ4151HnonsyncaGcaC15959130.00081458712716-12718
ORF1ab/nsp911Q11QQ4151QsyncaGcaA306306112716-12718
ORF1ab/nsp911Q11RQ4151RnonsyncAgcGg1421410.99295812716-12718
ORF1ab/nsp911Q11RQ4151RnonsyncAGcGT14210.0070422512716-12718
ORF1ab/nsp911Q11delQ4151deldelCAG---2727112716-12718
ORF1ab/nsp911Q11XQ4151XnonsynCagTag77112716-12718
ORF1ab/nsp911Q11KQ4151KnonsynCagAag650.83333312716-12718
ORF1ab/nsp911Q11KQ4151KnonsynCaGAaA610.16666712716-12718
ORF1ab/nsp911Q11LQ4151LnonsyncAgcTg22112716-12718
ORF1ab/nsp911Q11del2Q4151del2delcAGc--22112716-12718
ORF1ab/nsp911Q11del1Q4151del1delcaGca-210.512716-12718
ORF1ab/nsp911Q11del1Q4151del1delcAGc-N210.512716-12718
ORF1ab/nsp911Q11PQ4151PnonsyncAgcCg11112716-12718
ORF1ab/nsp911Q11NQ4151NnonsynCaGAaT11112716-12718

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp911Q11HcaGcaT1594615959All0.00305
ORF1ab/nsp911Q11HcaGcaC1315959All0.000002
ORF1ab/nsp911Q11HcaGcaT86848684AY.7.10.978699
ORF1ab/nsp911Q11HcaGcaT50495051AY.70.989612
ORF1ab/nsp911Q11HcaGcaC25051AY.70.000392
ORF1ab/nsp911Q11HcaGcaT17281728AY.7.20.966443
ORF1ab/nsp911Q11QcaGcaA306306All0.000059
ORF1ab/nsp911Q11RcAgcGg141142All0.000027
ORF1ab/nsp911Q11RcAGcGT1142All0
ORF1ab/nsp911Q11HcaGcaT133133AY.420.005351
ORF1ab/nsp911Q11QcaGcaA8686AY.40.000134
ORF1ab/nsp911Q11HcaGcaT8484B.1.617.20.000316
ORF1ab/nsp911Q11QcaGcaA7474B.1.1.70.000066
ORF1ab/nsp911Q11RcAgcGg4344B.1.1.70.000038
ORF1ab/nsp911Q11RcAGcGT144B.1.1.70.000001
ORF1ab/nsp911Q11HcaGcaT3639AY.40.000056
ORF1ab/nsp911Q11HcaGcaC339AY.40.000005
ORF1ab/nsp911Q11RcAgcGg3838AY.40.000059
ORF1ab/nsp911Q11HcaGcaT3838AY.60.001563
ORF1ab/nsp911Q11delCAG---2727All0.000005
ORF1ab/nsp911Q11QcaGcaA1919AY.70.003724
ORF1ab/nsp911Q11HcaGcaT1717AY.110.022758
ORF1ab/nsp911Q11RcAgcGg1616B.1.5260.000376
ORF1ab/nsp911Q11QcaGcaA1212AY.250.000072
ORF1ab/nsp911Q11HcaGcaT1212AY.430.000053
ORF1ab/nsp911Q11HcaGcaT1212AY.50.000248
ORF1ab/nsp911Q11HcaGcaT1212AY.880.01061
ORF1ab/nsp911Q11QcaGcaA1212B.1.20.000106
ORF1ab/nsp911Q11HcaGcaT1111AY.1130.001566
ORF1ab/nsp911Q11HcaGcaT1010AY.1210.001353
ORF1ab/nsp911Q11HcaGcaT1010AY.250.00006
ORF1ab/nsp911Q11QcaGcaA1010B.1.6030.106383
ORF1ab/nsp911Q11QcaGcaA88B.1.617.20.00003
ORF1ab/nsp911Q11XCagTag77All0.000001
ORF1ab/nsp911Q11QcaGcaA77AY.420.000282
ORF1ab/nsp911Q11HcaGcaT77AY.840.003062
ORF1ab/nsp911Q11HcaGcaT67B.10.000055
ORF1ab/nsp911Q11HcaGcaC17B.10.000009
ORF1ab/nsp911Q11HcaGcaT67B.1.1.70.000005
ORF1ab/nsp911Q11HcaGcaC17B.1.1.70.000001
ORF1ab/nsp911Q11QcaGcaA77B.1.6210.00062
ORF1ab/nsp911Q11KCagAag56All0.000001
ORF1ab/nsp911Q11KCaGAaA16All0
ORF1ab/nsp911Q11HcaGcaT66AY.1110.001099
ORF1ab/nsp911Q11delCAG---66AY.250.000036
ORF1ab/nsp911Q11HcaGcaT66AY.30.00006
ORF1ab/nsp911Q11RcAgcGg66B.1.20.000053
ORF1ab/nsp911Q11HcaGcaT55AY.200.000194
ORF1ab/nsp911Q11QcaGcaA55AY.440.00003
ORF1ab/nsp911Q11RcAgcGg55AY.470.000156
ORF1ab/nsp911Q11RcAgcGg55AY.530.001438
ORF1ab/nsp911Q11HcaGcaT55AY.750.00028
ORF1ab/nsp911Q11QcaGcaA55B.1.1.4660.043478
ORF1ab/nsp911Q11QcaGcaA55B.1.5260.000118
ORF1ab/nsp911Q11RcAgcGg55B.1.617.20.000019
ORF1ab/nsp911Q11RcAgcGg44AY.1030.000025
ORF1ab/nsp911Q11HcaGcaT44AY.4.30.003367
ORF1ab/nsp911Q11HcaGcaT44AY.5.30.00135
ORF1ab/nsp911Q11HcaGcaT44AY.580.00363
ORF1ab/nsp911Q11QcaGcaA44AY.610.000419
ORF1ab/nsp911Q11delCAG---44B.1.1.70.000004
ORF1ab/nsp911Q11QcaGcaA44B.1.2430.000278
ORF1ab/nsp911Q11QcaGcaA44B.1.3510.000119
ORF1ab/nsp911Q11HcaGcaC23AY.1030.000012
ORF1ab/nsp911Q11HcaGcaT13AY.1030.000006
ORF1ab/nsp911Q11HcaGcaT33AY.1060.001005
ORF1ab/nsp911Q11HcaGcaT33AY.290.000047
ORF1ab/nsp911Q11HcaGcaT33AY.46.10.00308
ORF1ab/nsp911Q11HcaGcaT33AY.920.000862
ORF1ab/nsp911Q11QcaGcaA33B.1.1.5190.000119
ORF1ab/nsp911Q11XCagTag33B.1.20.000026
ORF1ab/nsp911Q11HcaGcaT33B.1.20.000026
ORF1ab/nsp911Q11QcaGcaA33B.1.617.10.000387
ORF1ab/nsp911Q11QcaGcaA220.111111
ORF1ab/nsp911Q11KCagAag120.055556
ORF1ab/nsp911Q11KCaGAaA120.055556
ORF1ab/nsp911Q11del2cAGc--22All0
ORF1ab/nsp911Q11LcAgcTg22All0
ORF1ab/nsp911Q11del1caGca-12All0
ORF1ab/nsp911Q11del1cAGc-N12All0
ORF1ab/nsp911Q11QcaGcaA22AY.1010.000981
ORF1ab/nsp911Q11HcaGcaT22AY.1020.000053
ORF1ab/nsp911Q11HcaGcaT22AY.1170.000169
ORF1ab/nsp911Q11HcaGcaT22AY.120.000632
ORF1ab/nsp911Q11QcaGcaA22AY.290.000032
ORF1ab/nsp911Q11QcaGcaA22AY.4.2.10.000298
ORF1ab/nsp911Q11RcAgcGg22AY.420.00008
ORF1ab/nsp911Q11HcaGcaT22AY.450.000243
ORF1ab/nsp911Q11HcaGcaT22AY.46.60.000144
ORF1ab/nsp911Q11HcaGcaT22AY.490.00639
ORF1ab/nsp911Q11HcaGcaT22AY.560.00321
ORF1ab/nsp911Q11HcaGcaT22AY.640.00119
ORF1ab/nsp911Q11QcaGcaA22AY.900.001369
ORF1ab/nsp911Q11HcaGcaT22AY.980.000158
ORF1ab/nsp911Q11HcaGcaT22AY.99.10.003106
ORF1ab/nsp911Q11RcAgcGg22B.1.10.000036
ORF1ab/nsp911Q11QcaGcaA22B.1.1.3030.005525
ORF1ab/nsp911Q11RcAgcGg22B.1.1.4340.000697
ORF1ab/nsp911Q11RcAgcGg22B.1.1.700.000682
ORF1ab/nsp911Q11HcaGcaT22B.1.4270.000101
ORF1ab/nsp911Q11QcaGcaA22B.1.5250.000226
ORF1ab/nsp911Q11XCagTag22B.1.5960.000174
ORF1ab/nsp911Q11QcaGcaA22D.20.00015
ORF1ab/nsp911Q11QcaGcaA22N.50.003534
ORF1ab/nsp911Q11XCagTag11A.2.20.001689
ORF1ab/nsp911Q11NCaGAaT11All0
ORF1ab/nsp911Q11PcAgcCg11All0
ORF1ab/nsp911Q11HcaGcaT11AY.1000.000046
ORF1ab/nsp911Q11RcAgcGg11AY.1020.000027
ORF1ab/nsp911Q11QcaGcaA11AY.1020.000027
ORF1ab/nsp911Q11QcaGcaA11AY.1030.000006
ORF1ab/nsp911Q11delCAG---11AY.1110.000183
ORF1ab/nsp911Q11RcAgcGg11AY.1160.000287
ORF1ab/nsp911Q11RcAgcGg11AY.1190.000035
ORF1ab/nsp911Q11HcaGcaT11AY.1190.000035
ORF1ab/nsp911Q11RcAgcGg11AY.1200.000037
ORF1ab/nsp911Q11RcAgcGg11AY.200.000039
ORF1ab/nsp911Q11HcaGcaT11AY.210.001898
ORF1ab/nsp911Q11QcaGcaA11AY.240.000431
ORF1ab/nsp911Q11del1cAGc-N11AY.250.000006
ORF1ab/nsp911Q11KCagAag11AY.290.000016
ORF1ab/nsp911Q11QcaGcaA11AY.30.00001
ORF1ab/nsp911Q11HcaGcaT11AY.330.000067
ORF1ab/nsp911Q11QcaGcaA11AY.360.000148
ORF1ab/nsp911Q11QcaGcaA11AY.370.000316
ORF1ab/nsp911Q11HcaGcaT11AY.380.000499
ORF1ab/nsp911Q11HcaGcaT11AY.390.000025
ORF1ab/nsp911Q11QcaGcaA11AY.39.10.00004
ORF1ab/nsp911Q11HcaGcaC11AY.4.20.000022
ORF1ab/nsp911Q11HcaGcaT11AY.400.000964
ORF1ab/nsp911Q11QcaGcaA11AY.430.000004
ORF1ab/nsp911Q11RcAgcGg11AY.430.000004
ORF1ab/nsp911Q11HcaGcaT11AY.440.000006
ORF1ab/nsp911Q11HcaGcaT11AY.460.000104
ORF1ab/nsp911Q11QcaGcaA11AY.5.30.000337
ORF1ab/nsp911Q11QcaGcaA11AY.540.000095
ORF1ab/nsp911Q11RcAgcGg11AY.670.000464
ORF1ab/nsp911Q11NCaGAaT11AY.670.000464
ORF1ab/nsp911Q11HcaGcaT11AY.690.000187
ORF1ab/nsp911Q11delCAG---11AY.70.000196
ORF1ab/nsp911Q11delCAG---11AY.750.000056
ORF1ab/nsp911Q11QcaGcaA11AY.75.10.00018
ORF1ab/nsp911Q11LcAgcTg11AY.9.20.000037
ORF1ab/nsp911Q11HcaGcaT11AY.900.000684
ORF1ab/nsp911Q11HcaGcaT11AY.950.000761
ORF1ab/nsp911Q11RcAgcGg11AY.980.000079
ORF1ab/nsp911Q11HcaGcaT11AY.98.10.000048
ORF1ab/nsp911Q11RcAgcGg11AY.98.10.000048
ORF1ab/nsp911Q11delCAG---11AY.990.001049
ORF1ab/nsp911Q11HcaGcaT11AY.990.001049
ORF1ab/nsp911Q11HcaGcaT11B0.000128
ORF1ab/nsp911Q11delCAG---11B0.000128
ORF1ab/nsp911Q11QcaGcaA11B.10.000009
ORF1ab/nsp911Q11KCagAag11B.10.000009
ORF1ab/nsp911Q11PcAgcCg11B.10.000009
ORF1ab/nsp911Q11delCAG---11B.1.10.000018
ORF1ab/nsp911Q11XCagTag11B.1.10.000018
ORF1ab/nsp911Q11QcaGcaA11B.1.10.000018
ORF1ab/nsp911Q11delCAG---11B.1.1.1390.022727
ORF1ab/nsp911Q11QcaGcaA11B.1.1.2140.000055
ORF1ab/nsp911Q11HcaGcaT11B.1.1.2220.000204
ORF1ab/nsp911Q11delCAG---11B.1.1.280.000311
ORF1ab/nsp911Q11QcaGcaA11B.1.1.2860.002899
ORF1ab/nsp911Q11QcaGcaA11B.1.1.3110.000358
ORF1ab/nsp911Q11QcaGcaA11B.1.1.3180.000302
ORF1ab/nsp911Q11delCAG---11B.1.1.3480.000796
ORF1ab/nsp911Q11KCagAag11B.1.1.5190.00004
ORF1ab/nsp911Q11QcaGcaA11B.1.1.630.000386
ORF1ab/nsp911Q11HcaGcaC11B.1.1260.001276
ORF1ab/nsp911Q11HcaGcaT11B.1.177.820.000477
ORF1ab/nsp911Q11del2cAGc--11B.1.20.000009
ORF1ab/nsp911Q11delCAG---11B.1.20.000009
ORF1ab/nsp911Q11del2cAGc--11B.1.2400.000216
ORF1ab/nsp911Q11HcaGcaC11B.1.2580.000067
ORF1ab/nsp911Q11delCAG---11B.1.2580.000067
ORF1ab/nsp911Q11HcaGcaT11B.1.4090.000781
ORF1ab/nsp911Q11RcAgcGg11B.1.4270.00005
ORF1ab/nsp911Q11HcaGcaT11B.1.4970.000315
ORF1ab/nsp911Q11QcaGcaA11B.1.5170.000427
ORF1ab/nsp911Q11HcaGcaC11B.1.5870.001898
ORF1ab/nsp911Q11delCAG---11B.1.5950.000261
ORF1ab/nsp911Q11del1caGca-11B.1.617.10.000129
ORF1ab/nsp911Q11KCagAag11B.1.617.20.000004
ORF1ab/nsp911Q11delCAG---11B.1.617.20.000004
ORF1ab/nsp911Q11delCAG---11C.360.000911
ORF1ab/nsp911Q11delCAG---11N.40.004255
ORF1ab/nsp911Q11QcaGcaA11P.10.000016
ORF1ab/nsp911Q11RcAgcGg11P.10.000016
ORF1ab/nsp911Q11delCAG---11P.1.10.000318
ORF1ab/nsp911Q11LcAgcTg11Q.10.000126
ORF1ab/nsp911Q11delCAG---11Q.20.000613