CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 107

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp9107A107AA4247AsyngcTgcC122711250.9168713004-13006
ORF1ab/nsp9107A107AA4247AsyngcTgcA1227910.074164613004-13006
ORF1ab/nsp9107A107AA4247AsyngcTgcG1227110.0089649513004-13006
ORF1ab/nsp9107A107VA4247VnonsyngCtgTt2842820.99295813004-13006
ORF1ab/nsp9107A107VA4247VnonsyngCTgTA28420.0070422513004-13006
ORF1ab/nsp9107A107SA4247SnonsynGctTct2762750.99637713004-13006
ORF1ab/nsp9107A107SA4247SnonsynGcTTcA27610.0036231913004-13006
ORF1ab/nsp9107A107TA4247TnonsynGctAct2582540.98449613004-13006
ORF1ab/nsp9107A107TA4247TnonsynGcTAcA25840.015503913004-13006
ORF1ab/nsp9107A107delA4247deldelGCT---4545113004-13006
ORF1ab/nsp9107A107PA4247PnonsynGctCct4040113004-13006
ORF1ab/nsp9107A107KA4247KnonsynGCTAAA66113004-13006
ORF1ab/nsp9107A107EA4247EnonsyngCTgAA44113004-13006
ORF1ab/nsp9107A107DA4247DnonsyngCtgAt33113004-13006
ORF1ab/nsp9107A107GA4247GnonsyngCtgGt22113004-13006
ORF1ab/nsp9107A107XA4247XnonsynGCTTAA22113004-13006
ORF1ab/nsp9107A107NA4247NnonsynGCtAAt22113004-13006
ORF1ab/nsp9107A107CA4247CnonsynGCtTGt11113004-13006
ORF1ab/nsp9107A107del2A4247del2delGCt--t11113004-13006
ORF1ab/nsp9107A107del1A4247del1delgcTgc-11113004-13006

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp9107A107AgcTgcC11251227All0.000215
ORF1ab/nsp9107A107AgcTgcA911227All0.000017
ORF1ab/nsp9107A107AgcTgcG111227All0.000002
ORF1ab/nsp9107A107AgcTgcC522522B.1.3560.901554
ORF1ab/nsp9107A107AgcTgcC306331AY.40.000476
ORF1ab/nsp9107A107AgcTgcA23331AY.40.000036
ORF1ab/nsp9107A107AgcTgcG2331AY.40.000003
ORF1ab/nsp9107A107VgCtgTt282284All0.000054
ORF1ab/nsp9107A107VgCTgTA2284All0
ORF1ab/nsp9107A107SGctTct275276All0.000053
ORF1ab/nsp9107A107SGcTTcA1276All0
ORF1ab/nsp9107A107TGctAct254258All0.000049
ORF1ab/nsp9107A107TGcTAcA4258All0.000001
ORF1ab/nsp9107A107SGctTct210210B.1.1.70.000188
ORF1ab/nsp9107A107VgCtgTt106106B.1.1.70.000095
ORF1ab/nsp9107A107TGctAct8181AY.530.023289
ORF1ab/nsp9107A107AgcTgcC7476AY.1030.000459
ORF1ab/nsp9107A107AgcTgcA276AY.1030.000012
ORF1ab/nsp9107A107TGctAct5959B.1.1.70.000053
ORF1ab/nsp9107A107AgcTgcC5151B.1.1.3970.114865
ORF1ab/nsp9107A107delGCT---4545All0.000009
ORF1ab/nsp9107A107AgcTgcC3141B.1.1.70.000028
ORF1ab/nsp9107A107AgcTgcA741B.1.1.70.000006
ORF1ab/nsp9107A107AgcTgcG341B.1.1.70.000003
ORF1ab/nsp9107A107PGctCct4040All0.000008
ORF1ab/nsp9107A107VgCtgTt3030B.1.1600.000936
ORF1ab/nsp9107A107VgCtgTt2626AY.40.00004
ORF1ab/nsp9107A107AgcTgcC2426B.1.617.20.00009
ORF1ab/nsp9107A107AgcTgcG226B.1.617.20.000008
ORF1ab/nsp9107A107AgcTgcC1722B.1.20.00015
ORF1ab/nsp9107A107AgcTgcA522B.1.20.000044
ORF1ab/nsp9107A107AgcTgcC1020AY.430.000044
ORF1ab/nsp9107A107AgcTgcA920AY.430.00004
ORF1ab/nsp9107A107AgcTgcG120AY.430.000004
ORF1ab/nsp9107A107SGctTct1818B.1.2400.00388
ORF1ab/nsp9107A107AgcTgcC1517B.1.10.000272
ORF1ab/nsp9107A107AgcTgcA217B.1.10.000036
ORF1ab/nsp9107A107TGctAct1616AY.40.000025
ORF1ab/nsp9107A107TGctAct1414AY.1030.000087
ORF1ab/nsp9107A107delGCT---1212B.1.1.70.000011
ORF1ab/nsp9107A107TGctAct1111AY.250.000066
ORF1ab/nsp9107A107AgcTgcC810AY.30.00008
ORF1ab/nsp9107A107AgcTgcA210AY.30.00002
ORF1ab/nsp9107A107AgcTgcC1010B.1.6210.000885
ORF1ab/nsp9107A107VgCtgTt99AY.1030.000056
ORF1ab/nsp9107A107AgcTgcC69B.1.1770.000079
ORF1ab/nsp9107A107AgcTgcA39B.1.1770.00004
ORF1ab/nsp9107A107AgcTgcC78AY.250.000042
ORF1ab/nsp9107A107AgcTgcA18AY.250.000006
ORF1ab/nsp9107A107VgCtgTt88AY.390.000198
ORF1ab/nsp9107A107AgcTgcA58B.10.000046
ORF1ab/nsp9107A107AgcTgcC38B.10.000027
ORF1ab/nsp9107A107VgCtgTt88B.1.20.00007
ORF1ab/nsp9107A107PGctCct77AY.40.000011
ORF1ab/nsp9107A107KGCTAAA66All0.000001
ORF1ab/nsp9107A107TGctAct66AY.1020.000159
ORF1ab/nsp9107A107SGctTct66AY.40.000009
ORF1ab/nsp9107A107AgcTgcA66AZ.40.020134
ORF1ab/nsp9107A107VgCtgTt46B.10.000037
ORF1ab/nsp9107A107VgCTgTA26B.10.000018
ORF1ab/nsp9107A107TGctAct66B.1.6250.014118
ORF1ab/nsp9107A107SGctTct55AY.250.00003
ORF1ab/nsp9107A107SGctTct55AY.30.00005
ORF1ab/nsp9107A107AgcTgcA35AY.440.000018
ORF1ab/nsp9107A107AgcTgcC25AY.440.000012
ORF1ab/nsp9107A107PGctCct55B.10.000046
ORF1ab/nsp9107A107TGctAct45B.10.000037
ORF1ab/nsp9107A107TGcTAcA15B.10.000009
ORF1ab/nsp9107A107TGctAct45B.1.10.000073
ORF1ab/nsp9107A107TGcTAcA15B.1.10.000018
ORF1ab/nsp9107A107VgCtgTt55B.1.1.5190.000199
ORF1ab/nsp9107A107PGctCct55B.1.1.70.000004
ORF1ab/nsp9107A107AgcTgcA35B.1.3510.000089
ORF1ab/nsp9107A107AgcTgcC25B.1.3510.000059
ORF1ab/nsp9107A107EgCTgAA44All0.000001
ORF1ab/nsp9107A107SGctTct44AY.1030.000025
ORF1ab/nsp9107A107VgCtgTt44AY.250.000024
ORF1ab/nsp9107A107VgCtgTt44AY.4.20.000087
ORF1ab/nsp9107A107delGCT---44AY.4.50.00043
ORF1ab/nsp9107A107AgcTgcA34AY.420.000121
ORF1ab/nsp9107A107AgcTgcC14AY.420.00004
ORF1ab/nsp9107A107TGctAct44AY.460.000416
ORF1ab/nsp9107A107SGctTct44B.10.000037
ORF1ab/nsp9107A107VgCtgTt44B.1.1.2940.005063
ORF1ab/nsp9107A107AgcTgcC44B.1.1.3700.050633
ORF1ab/nsp9107A107TGctAct44B.1.1.500.002716
ORF1ab/nsp9107A107TGctAct44B.1.1600.000125
ORF1ab/nsp9107A107delGCT---44B.1.1770.000053
ORF1ab/nsp9107A107TGctAct44B.1.617.20.000015
ORF1ab/nsp9107A107delGCT---44B.1.617.20.000015
ORF1ab/nsp9107A107AgcTgcA24C.370.000232
ORF1ab/nsp9107A107AgcTgcC24C.370.000232
ORF1ab/nsp9107A107DgCtgAt33All0.000001
ORF1ab/nsp9107A107VgCtgTt33AY.200.000117
ORF1ab/nsp9107A107AgcTgcC23AY.200.000078
ORF1ab/nsp9107A107AgcTgcA13AY.200.000039
ORF1ab/nsp9107A107VgCtgTt33AY.260.000085
ORF1ab/nsp9107A107delGCT---33AY.430.000013
ORF1ab/nsp9107A107VgCtgTt33AY.440.000018
ORF1ab/nsp9107A107AgcTgcC33AY.60.000123
ORF1ab/nsp9107A107PGctCct33B.1.10.000054
ORF1ab/nsp9107A107KGCTAAA33B.1.10.000054
ORF1ab/nsp9107A107VgCtgTt33B.1.1770.00004
ORF1ab/nsp9107A107TGctAct33B.1.20.000026
ORF1ab/nsp9107A107VgCtgTt33B.1.5650.002431
ORF1ab/nsp9107A107VgCtgTt33B.1.617.20.000011
ORF1ab/nsp9107A107TGctAct33B.6.60.002667
ORF1ab/nsp9107A107EgCTgAA33C.370.000348
ORF1ab/nsp9107A107VgCtgTt22A.2.5.20.003145
ORF1ab/nsp9107A107GgCtgGt22All0
ORF1ab/nsp9107A107XGCTTAA22All0
ORF1ab/nsp9107A107NGCtAAt22All0
ORF1ab/nsp9107A107VgCtgTt22AY.1180.000125
ORF1ab/nsp9107A107SGctTct22AY.1190.000071
ORF1ab/nsp9107A107VgCtgTt22AY.130.000322
ORF1ab/nsp9107A107VgCtgTt22AY.160.000759
ORF1ab/nsp9107A107AgcTgcC22AY.240.000862
ORF1ab/nsp9107A107VgCtgTt22AY.290.000032
ORF1ab/nsp9107A107TGctAct22AY.330.000134
ORF1ab/nsp9107A107AgcTgcA22AY.4.20.000043
ORF1ab/nsp9107A107SGctTct22AY.430.000009
ORF1ab/nsp9107A107PGctCct22AY.430.000009
ORF1ab/nsp9107A107TGctAct22AY.440.000012
ORF1ab/nsp9107A107AgcTgcC22AY.540.000191
ORF1ab/nsp9107A107VgCtgTt22AY.750.000112
ORF1ab/nsp9107A107AgcTgcC22B0.000256
ORF1ab/nsp9107A107VgCtgTt22B.1.10.000036
ORF1ab/nsp9107A107VgCtgTt22B.1.1.3050.007722
ORF1ab/nsp9107A107AgcTgcC22B.1.1.3740.004751
ORF1ab/nsp9107A107VgCtgTt22B.1.1.3920.105263
ORF1ab/nsp9107A107PGctCct22B.1.1.5190.000079
ORF1ab/nsp9107A107AgcTgcA12B.1.1600.000031
ORF1ab/nsp9107A107AgcTgcC12B.1.1600.000031
ORF1ab/nsp9107A107VgCtgTt22B.1.177.530.004785
ORF1ab/nsp9107A107delGCT---22B.1.3110.000549
ORF1ab/nsp9107A107VgCtgTt22B.1.360.000292
ORF1ab/nsp9107A107PGctCct22B.1.3690.00057
ORF1ab/nsp9107A107VgCtgTt22B.1.4220.001625
ORF1ab/nsp9107A107TGctAct22B.1.4290.000047
ORF1ab/nsp9107A107TGctAct22B.1.5170.000854
ORF1ab/nsp9107A107SGctTct22B.1.617.20.000008
ORF1ab/nsp9107A107VgCtgTt22B.1.6210.000177
ORF1ab/nsp9107A107SGctTct22B.310.007463
ORF1ab/nsp9107A107TGcTAcA12C.370.000116
ORF1ab/nsp9107A107TGctAct12C.370.000116
ORF1ab/nsp9107A107PGctCct22D.20.00015
ORF1ab/nsp9107A107SGctTct22P.10.000032
ORF1ab/nsp9107A107AgcTgcA11A0.000387
ORF1ab/nsp9107A107VgCtgTt11A.2.50.000499
ORF1ab/nsp9107A107TGctAct11AD.20.000219
ORF1ab/nsp9107A107del2GCt--t11All0
ORF1ab/nsp9107A107CGCtTGt11All0
ORF1ab/nsp9107A107del1gcTgc-11All0
ORF1ab/nsp9107A107AgcTgcC11AY.1020.000027
ORF1ab/nsp9107A107VgCtgTt11AY.1090.00074
ORF1ab/nsp9107A107AgcTgcC11AY.1190.000035
ORF1ab/nsp9107A107AgcTgcC11AY.120.10.000321
ORF1ab/nsp9107A107SGctTct11AY.160.00038
ORF1ab/nsp9107A107TGctAct11AY.220.002092
ORF1ab/nsp9107A107TGcTAcA11AY.240.000431
ORF1ab/nsp9107A107SGctTct11AY.260.000028
ORF1ab/nsp9107A107SGctTct11AY.270.000065
ORF1ab/nsp9107A107TGctAct11AY.270.000065
ORF1ab/nsp9107A107TGctAct11AY.290.000016
ORF1ab/nsp9107A107AgcTgcA11AY.290.000016
ORF1ab/nsp9107A107TGctAct11AY.30.00001
ORF1ab/nsp9107A107VgCtgTt11AY.30.00001
ORF1ab/nsp9107A107VgCtgTt11AY.330.000067
ORF1ab/nsp9107A107delGCT---11AY.340.000097
ORF1ab/nsp9107A107TGctAct11AY.390.000025
ORF1ab/nsp9107A107AgcTgcC11AY.390.000025
ORF1ab/nsp9107A107SGctTct11AY.390.000025
ORF1ab/nsp9107A107delGCT---11AY.40.000002
ORF1ab/nsp9107A107AgcTgcC11AY.4.2.10.000149
ORF1ab/nsp9107A107AgcTgcC11AY.4.50.000107
ORF1ab/nsp9107A107PGctCct11AY.420.00004
ORF1ab/nsp9107A107TGctAct11AY.420.00004
ORF1ab/nsp9107A107DgCtgAt11AY.440.000006
ORF1ab/nsp9107A107PGctCct11AY.440.000006
ORF1ab/nsp9107A107delGCT---11AY.46.20.000635
ORF1ab/nsp9107A107AgcTgcG11AY.50.000021
ORF1ab/nsp9107A107SGctTct11AY.520.000814
ORF1ab/nsp9107A107delGCT---11AY.60.000041
ORF1ab/nsp9107A107PGctCct11AY.60.000041
ORF1ab/nsp9107A107VgCtgTt11AY.610.000105
ORF1ab/nsp9107A107TGctAct11AY.620.000436
ORF1ab/nsp9107A107delGCT---11AY.720.001361
ORF1ab/nsp9107A107AgcTgcA11AY.740.000116
ORF1ab/nsp9107A107SGctTct11AY.750.000056
ORF1ab/nsp9107A107AgcTgcC11AY.750.000056
ORF1ab/nsp9107A107TGctAct11AY.90.000068
ORF1ab/nsp9107A107DgCtgAt11AY.9.10.000084
ORF1ab/nsp9107A107AgcTgcC11AY.9.20.000037
ORF1ab/nsp9107A107AgcTgcC11AY.920.000287
ORF1ab/nsp9107A107AgcTgcC11AY.930.000273
ORF1ab/nsp9107A107delGCT---11AY.990.001049
ORF1ab/nsp9107A107delGCT---11AY.99.10.001553
ORF1ab/nsp9107A107AgcTgcC11AY.99.20.000092
ORF1ab/nsp9107A107SGctTct11AY.99.20.000092
ORF1ab/nsp9107A107PGctCct11B0.000128
ORF1ab/nsp9107A107VgCtgTt11B0.000128
ORF1ab/nsp9107A107GgCtgGt11B0.000128
ORF1ab/nsp9107A107EgCTgAA11B.10.000009
ORF1ab/nsp9107A107KGCTAAA11B.10.000009
ORF1ab/nsp9107A107NGCtAAt11B.1.10.000018
ORF1ab/nsp9107A107delGCT---11B.1.10.000018
ORF1ab/nsp9107A107delGCT---11B.1.1.10.000327
ORF1ab/nsp9107A107VgCtgTt11B.1.1.1480.008772
ORF1ab/nsp9107A107VgCtgTt11B.1.1.1530.001095
ORF1ab/nsp9107A107VgCtgTt11B.1.1.1720.018182
ORF1ab/nsp9107A107AgcTgcA11B.1.1.2070.001182
ORF1ab/nsp9107A107AgcTgcC11B.1.1.2140.000055
ORF1ab/nsp9107A107KGCTAAA11B.1.1.2200.001859
ORF1ab/nsp9107A107TGctAct11B.1.1.2220.000204
ORF1ab/nsp9107A107PGctCct11B.1.1.2270.004348
ORF1ab/nsp9107A107TGctAct11B.1.1.280.000311
ORF1ab/nsp9107A107AgcTgcC11B.1.1.2840.000107
ORF1ab/nsp9107A107SGctTct11B.1.1.3010.001179
ORF1ab/nsp9107A107VgCtgTt11B.1.1.3180.000302
ORF1ab/nsp9107A107TGctAct11B.1.1.330.000421
ORF1ab/nsp9107A107delGCT---11B.1.1.3480.000796
ORF1ab/nsp9107A107delGCT---11B.1.1.370.000193
ORF1ab/nsp9107A107VgCtgTt11B.1.1.3880.045455
ORF1ab/nsp9107A107VgCtgTt11B.1.1.390.00051
ORF1ab/nsp9107A107TGctAct11B.1.1.3980.003226
ORF1ab/nsp9107A107TGctAct11B.1.1.4170.002703
ORF1ab/nsp9107A107AgcTgcG11B.1.1.5250.005464
ORF1ab/nsp9107A107VgCtgTt11B.1.1.630.000386
ORF1ab/nsp9107A107del1gcTgc-11B.1.1.70.000001
ORF1ab/nsp9107A107del2GCt--t11B.1.1.70.000001
ORF1ab/nsp9107A107VgCtgTt11B.1.160.120.00641
ORF1ab/nsp9107A107TGctAct11B.1.1770.000013
ORF1ab/nsp9107A107VgCtgTt11B.1.177.120.000152
ORF1ab/nsp9107A107PGctCct11B.1.177.170.000821
ORF1ab/nsp9107A107VgCtgTt11B.1.177.430.001477
ORF1ab/nsp9107A107VgCtgTt11B.1.177.440.000519
ORF1ab/nsp9107A107VgCtgTt11B.1.177.570.000281
ORF1ab/nsp9107A107PGctCct11B.1.177.70.000165
ORF1ab/nsp9107A107delGCT---11B.1.177.830.001481
ORF1ab/nsp9107A107SGctTct11B.1.177.860.000183
ORF1ab/nsp9107A107VgCtgTt11B.1.177.860.000183
ORF1ab/nsp9107A107delGCT---11B.1.20.000009
ORF1ab/nsp9107A107PGctCct11B.1.20.000009
ORF1ab/nsp9107A107TGctAct11B.1.214.30.007143
ORF1ab/nsp9107A107AgcTgcC11B.1.2210.000071
ORF1ab/nsp9107A107AgcTgcA11B.1.2340.000132
ORF1ab/nsp9107A107AgcTgcA11B.1.2400.000216
ORF1ab/nsp9107A107VgCtgTt11B.1.2400.000216
ORF1ab/nsp9107A107AgcTgcA11B.1.2430.00007
ORF1ab/nsp9107A107SGctTct11B.1.2430.00007
ORF1ab/nsp9107A107VgCtgTt11B.1.2580.000067
ORF1ab/nsp9107A107VgCtgTt11B.1.258.110.000396
ORF1ab/nsp9107A107PGctCct11B.1.36.100.004785
ORF1ab/nsp9107A107TGctAct11B.1.36.290.000517
ORF1ab/nsp9107A107AgcTgcG11B.1.36.80.001
ORF1ab/nsp9107A107VgCtgTt11B.1.3670.000792
ORF1ab/nsp9107A107AgcTgcA11B.1.3800.006623
ORF1ab/nsp9107A107CGCtTGt11B.1.4160.001269
ORF1ab/nsp9107A107SGctTct11B.1.4290.000024
ORF1ab/nsp9107A107PGctCct11B.1.4290.000024
ORF1ab/nsp9107A107TGctAct11B.1.5240.001406
ORF1ab/nsp9107A107SGctTct11B.1.5260.000024
ORF1ab/nsp9107A107TGctAct11B.1.5640.000426
ORF1ab/nsp9107A107XGCTTAA11B.1.5680.001111
ORF1ab/nsp9107A107AgcTgcA11B.1.5800.004065
ORF1ab/nsp9107A107PGctCct11B.1.5820.000491
ORF1ab/nsp9107A107TGctAct11B.1.5960.000087
ORF1ab/nsp9107A107PGctCct11B.1.617.20.000004
ORF1ab/nsp9107A107VgCtgTt11B.1.617.30.002985
ORF1ab/nsp9107A107delGCT---11B.1.6300.005236
ORF1ab/nsp9107A107delGCT---11B.340.013699
ORF1ab/nsp9107A107VgCtgTt11B.430.014286
ORF1ab/nsp9107A107AgcTgcA11C.160.00106
ORF1ab/nsp9107A107AgcTgcA11C.36.30.000567
ORF1ab/nsp9107A107DgCtgAt11C.370.000116
ORF1ab/nsp9107A107SGcTTcA11C.370.000116
ORF1ab/nsp9107A107XGCTTAA11C.370.000116
ORF1ab/nsp9107A107NGCtAAt11C.370.000116
ORF1ab/nsp9107A107KGCTAAA11C.370.000116
ORF1ab/nsp9107A107VgCtgTt11C.370.000116
ORF1ab/nsp9107A107AgcTgcC11C.37.10.002618
ORF1ab/nsp9107A107SGctTct11D.20.000075
ORF1ab/nsp9107A107VgCtgTt11D.20.000075
ORF1ab/nsp9107A107VgCtgTt11M.10.023256
ORF1ab/nsp9107A107delGCT---11N.40.004255
ORF1ab/nsp9107A107VgCtgTt11N.50.001767
ORF1ab/nsp9107A107TGctAct11P.10.000016
ORF1ab/nsp9107A107GgCtgGt11P.10.000016
ORF1ab/nsp9107A107VgCtgTt11P.10.000016
ORF1ab/nsp9107A107AgcTgcC11Q.30.000145
ORF1ab/nsp9107A107TGctAct11Q.40.000455