CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 107 | A107A | A4247A | syn | gcT | gcC | 1227 | 1125 | 0.91687 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107A | A4247A | syn | gcT | gcA | 1227 | 91 | 0.0741646 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107A | A4247A | syn | gcT | gcG | 1227 | 11 | 0.00896495 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107V | A4247V | nonsyn | gCt | gTt | 284 | 282 | 0.992958 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107V | A4247V | nonsyn | gCT | gTA | 284 | 2 | 0.00704225 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107S | A4247S | nonsyn | Gct | Tct | 276 | 275 | 0.996377 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107S | A4247S | nonsyn | GcT | TcA | 276 | 1 | 0.00362319 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107T | A4247T | nonsyn | Gct | Act | 258 | 254 | 0.984496 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107T | A4247T | nonsyn | GcT | AcA | 258 | 4 | 0.0155039 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107del | A4247del | del | GCT | --- | 45 | 45 | 1 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107P | A4247P | nonsyn | Gct | Cct | 40 | 40 | 1 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107K | A4247K | nonsyn | GCT | AAA | 6 | 6 | 1 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107E | A4247E | nonsyn | gCT | gAA | 4 | 4 | 1 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107D | A4247D | nonsyn | gCt | gAt | 3 | 3 | 1 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107G | A4247G | nonsyn | gCt | gGt | 2 | 2 | 1 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107X | A4247X | nonsyn | GCT | TAA | 2 | 2 | 1 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107N | A4247N | nonsyn | GCt | AAt | 2 | 2 | 1 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107C | A4247C | nonsyn | GCt | TGt | 1 | 1 | 1 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107del2 | A4247del2 | del | GCt | --t | 1 | 1 | 1 | 13004-13006 |
ORF1ab/nsp9 | 107 | A107del1 | A4247del1 | del | gcT | gc- | 1 | 1 | 1 | 13004-13006 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1125 | 1227 | All | 0.000215 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 91 | 1227 | All | 0.000017 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcG | 11 | 1227 | All | 0.000002 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 522 | 522 | B.1.356 | 0.901554 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 306 | 331 | AY.4 | 0.000476 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 23 | 331 | AY.4 | 0.000036 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcG | 2 | 331 | AY.4 | 0.000003 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 282 | 284 | All | 0.000054 |
ORF1ab/nsp9 | 107 | A107V | gCT | gTA | 2 | 284 | All | 0 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 275 | 276 | All | 0.000053 |
ORF1ab/nsp9 | 107 | A107S | GcT | TcA | 1 | 276 | All | 0 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 254 | 258 | All | 0.000049 |
ORF1ab/nsp9 | 107 | A107T | GcT | AcA | 4 | 258 | All | 0.000001 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 210 | 210 | B.1.1.7 | 0.000188 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 106 | 106 | B.1.1.7 | 0.000095 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 81 | 81 | AY.53 | 0.023289 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 74 | 76 | AY.103 | 0.000459 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 2 | 76 | AY.103 | 0.000012 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 59 | 59 | B.1.1.7 | 0.000053 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 51 | 51 | B.1.1.397 | 0.114865 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 45 | 45 | All | 0.000009 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 31 | 41 | B.1.1.7 | 0.000028 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 7 | 41 | B.1.1.7 | 0.000006 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcG | 3 | 41 | B.1.1.7 | 0.000003 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 40 | 40 | All | 0.000008 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 30 | 30 | B.1.160 | 0.000936 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 26 | 26 | AY.4 | 0.00004 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 24 | 26 | B.1.617.2 | 0.00009 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcG | 2 | 26 | B.1.617.2 | 0.000008 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 17 | 22 | B.1.2 | 0.00015 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 5 | 22 | B.1.2 | 0.000044 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 10 | 20 | AY.43 | 0.000044 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 9 | 20 | AY.43 | 0.00004 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcG | 1 | 20 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 18 | 18 | B.1.240 | 0.00388 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 15 | 17 | B.1.1 | 0.000272 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 2 | 17 | B.1.1 | 0.000036 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 8 | 10 | AY.3 | 0.00008 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 2 | 10 | AY.3 | 0.00002 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 6 | 9 | B.1.177 | 0.000079 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 3 | 9 | B.1.177 | 0.00004 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 7 | 8 | AY.25 | 0.000042 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 8 | AY.25 | 0.000006 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 5 | 8 | B.1 | 0.000046 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 3 | 8 | B.1 | 0.000027 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp9 | 107 | A107K | GCT | AAA | 6 | 6 | All | 0.000001 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 6 | 6 | AZ.4 | 0.020134 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 4 | 6 | B.1 | 0.000037 |
ORF1ab/nsp9 | 107 | A107V | gCT | gTA | 2 | 6 | B.1 | 0.000018 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 6 | 6 | B.1.625 | 0.014118 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 3 | 5 | AY.44 | 0.000018 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 2 | 5 | AY.44 | 0.000012 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 4 | 5 | B.1 | 0.000037 |
ORF1ab/nsp9 | 107 | A107T | GcT | AcA | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp9 | 107 | A107T | GcT | AcA | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 3 | 5 | B.1.351 | 0.000089 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 2 | 5 | B.1.351 | 0.000059 |
ORF1ab/nsp9 | 107 | A107E | gCT | gAA | 4 | 4 | All | 0.000001 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 3 | 4 | AY.42 | 0.000121 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 4 | AY.42 | 0.00004 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 4 | 4 | B.1.1.294 | 0.005063 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 4 | 4 | B.1.1.370 | 0.050633 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 2 | 4 | C.37 | 0.000232 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 2 | 4 | C.37 | 0.000232 |
ORF1ab/nsp9 | 107 | A107D | gCt | gAt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 2 | 3 | AY.20 | 0.000078 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 3 | AY.20 | 0.000039 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp9 | 107 | A107K | GCT | AAA | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 3 | 3 | B.6.6 | 0.002667 |
ORF1ab/nsp9 | 107 | A107E | gCT | gAA | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp9 | 107 | A107G | gCt | gGt | 2 | 2 | All | 0 |
ORF1ab/nsp9 | 107 | A107X | GCT | TAA | 2 | 2 | All | 0 |
ORF1ab/nsp9 | 107 | A107N | GCt | AAt | 2 | 2 | All | 0 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 2 | 2 | B | 0.000256 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | B.1.1.305 | 0.007722 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | B.1.1.392 | 0.105263 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | B.1.422 | 0.001625 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 2 | 2 | B.31 | 0.007463 |
ORF1ab/nsp9 | 107 | A107T | GcT | AcA | 1 | 2 | C.37 | 0.000116 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 2 | C.37 | 0.000116 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp9 | 107 | A107del2 | GCt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 107 | A107C | GCt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 107 | A107del1 | gcT | gc- | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp9 | 107 | A107T | GcT | AcA | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp9 | 107 | A107D | gCt | gAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp9 | 107 | A107D | gCt | gAt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | B | 0.000128 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp9 | 107 | A107G | gCt | gGt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp9 | 107 | A107E | gCT | gAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 107 | A107K | GCT | AAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 107 | A107N | GCt | AAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp9 | 107 | A107K | GCT | AAA | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.1.388 | 0.045455 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcG | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp9 | 107 | A107del1 | gcT | gc- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 107 | A107del2 | GCt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcG | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp9 | 107 | A107C | GCt | TGt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp9 | 107 | A107X | GCT | TAA | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp9 | 107 | A107P | Gct | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | B.43 | 0.014286 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcA | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp9 | 107 | A107D | gCt | gAt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp9 | 107 | A107S | GcT | TcA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp9 | 107 | A107X | GCT | TAA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp9 | 107 | A107N | GCt | AAt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp9 | 107 | A107K | GCT | AAA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp9 | 107 | A107S | Gct | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | M.1 | 0.023256 |
ORF1ab/nsp9 | 107 | A107del | GCT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp9 | 107 | A107G | gCt | gGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp9 | 107 | A107V | gCt | gTt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp9 | 107 | A107A | gcT | gcC | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp9 | 107 | A107T | Gct | Act | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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