CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : Mut = V34F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp834V34FV3976FnonsynGttTtt51915191112191-12193

Details of the mutation V34F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp834V34FGttTtt51915191All0.000993
ORF1ab/nsp834V34FGttTtt10951095AY.250.006586
ORF1ab/nsp834V34FGttTtt10341034AY.440.006294
ORF1ab/nsp834V34FGttTtt535535B.1.1.2320.970962
ORF1ab/nsp834V34FGttTtt359359AY.40.000559
ORF1ab/nsp834V34FGttTtt335335B.1.1.1410.674044
ORF1ab/nsp834V34FGttTtt262262AY.430.001161
ORF1ab/nsp834V34FGttTtt212212B.1.617.20.000798
ORF1ab/nsp834V34FGttTtt110110B.10.001008
ORF1ab/nsp834V34FGttTtt9393AY.1030.000577
ORF1ab/nsp834V34FGttTtt8989B.1.1.70.00008
ORF1ab/nsp834V34FGttTtt7979AK.11
ORF1ab/nsp834V34FGttTtt7777B.1.1.2180.592308
ORF1ab/nsp834V34FGttTtt7777B.1.36.100.368421
ORF1ab/nsp834V34FGttTtt6464B.1.20.000564
ORF1ab/nsp834V34FGttTtt5454AY.120.017067
ORF1ab/nsp834V34FGttTtt4949B.1.10.000889
ORF1ab/nsp834V34FGttTtt4949B.1.1770.000645
ORF1ab/nsp834V34FGttTtt3030B.1.5170.01281
ORF1ab/nsp834V34FGttTtt2525B.1.1.1001
ORF1ab/nsp834V34FGttTtt2222AK.21
ORF1ab/nsp834V34FGttTtt2222AY.46.60.001589
ORF1ab/nsp834V34FGttTtt2222B.1.5260.000517
ORF1ab/nsp834V34FGttTtt2222P.10.000347
ORF1ab/nsp834V34FGttTtt2020B.1.4290.000471
ORF1ab/nsp834V34FGttTtt1919AY.4.50.002042
ORF1ab/nsp834V34FGttTtt1818AY.390.000445
ORF1ab/nsp834V34FGttTtt1818AY.4.20.00039
ORF1ab/nsp834V34FGttTtt1717AY.1040.03373
ORF1ab/nsp834V34FGttTtt1616B.1.1.5190.000635
ORF1ab/nsp834V34FGttTtt1616C.360.014572
ORF1ab/nsp834V34FGttTtt1313AY.1160.003728
ORF1ab/nsp834V34FGttTtt1313B.1.1.2890.027083
ORF1ab/nsp834V34FGttTtt1313B.1.2430.000905
ORF1ab/nsp834V34FGttTtt1212A.290.06383
ORF1ab/nsp834V34FGttTtt1212AY.1140.002773
ORF1ab/nsp834V34FGttTtt1010B.1.1600.000312
ORF1ab/nsp834V34FGttTtt99AY.1180.000564
ORF1ab/nsp834V34FGttTtt99AY.60.00037
ORF1ab/nsp834V34FGttTtt99B.1.1.470.048128
ORF1ab/nsp834V34FGttTtt88AY.1000.000368
ORF1ab/nsp834V34FGttTtt88B.1.177.860.001468
ORF1ab/nsp834V34FGttTtt77AY.1020.000186
ORF1ab/nsp834V34FGttTtt77B.1.1.3690.003124
ORF1ab/nsp834V34FGttTtt66AY.200.000233
ORF1ab/nsp834V34FGttTtt66AY.470.000187
ORF1ab/nsp834V34FGttTtt66AY.750.000336
ORF1ab/nsp834V34FGttTtt66AY.75.10.001082
ORF1ab/nsp834V34FGttTtt55AY.230.000349
ORF1ab/nsp834V34FGttTtt55AY.290.000079
ORF1ab/nsp834V34FGttTtt55AY.30.00005
ORF1ab/nsp834V34FGttTtt55B.1.1.10.001633
ORF1ab/nsp834V34FGttTtt55B.1.3960.003529
ORF1ab/nsp834V34FGttTtt44AY.1190.000141
ORF1ab/nsp834V34FGttTtt44AY.330.000267
ORF1ab/nsp834V34FGttTtt44AY.420.000161
ORF1ab/nsp834V34FGttTtt44AY.46.50.000794
ORF1ab/nsp834V34FGttTtt44AY.50.000083
ORF1ab/nsp834V34FGttTtt44B.1.1.3980.012903
ORF1ab/nsp834V34FGttTtt44B.1.1.4640.005891
ORF1ab/nsp834V34FGttTtt44B.1.2930.05
ORF1ab/nsp834V34FGttTtt44B.1.4330.01278
ORF1ab/nsp834V34FGttTtt44B.1.466.20.001565
ORF1ab/nsp834V34FGttTtt44B.1.5880.00364
ORF1ab/nsp834V34FGttTtt33AV.10.015152
ORF1ab/nsp834V34FGttTtt33AY.120.10.000963
ORF1ab/nsp834V34FGttTtt33AY.610.000314
ORF1ab/nsp834V34FGttTtt33AY.98.10.000145
ORF1ab/nsp834V34FGttTtt33B.1.177.330.004934
ORF1ab/nsp834V34FGttTtt33B.1.177.600.000655
ORF1ab/nsp834V34FGttTtt33B.1.2210.000213
ORF1ab/nsp834V34FGttTtt33B.1.6090.001438
ORF1ab/nsp834V34FGttTtt33B.1.617.10.000387
ORF1ab/nsp834V34FGttTtt22A0.000774
ORF1ab/nsp834V34FGttTtt22AY.1210.000271
ORF1ab/nsp834V34FGttTtt22AY.260.000057
ORF1ab/nsp834V34FGttTtt22AY.450.000243
ORF1ab/nsp834V34FGttTtt22AY.590.001059
ORF1ab/nsp834V34FGttTtt22AY.600.001876
ORF1ab/nsp834V34FGttTtt22AY.740.000231
ORF1ab/nsp834V34FGttTtt22AY.99.20.000184
ORF1ab/nsp834V34FGttTtt22B0.000256
ORF1ab/nsp834V34FGttTtt22B.1.1.100.00223
ORF1ab/nsp834V34FGttTtt22B.1.1.1610.007067
ORF1ab/nsp834V34FGttTtt22B.1.1.2140.000111
ORF1ab/nsp834V34FGttTtt22B.1.1.2160.001781
ORF1ab/nsp834V34FGttTtt22B.1.1.2220.000408
ORF1ab/nsp834V34FGttTtt22B.1.1.3170.000823
ORF1ab/nsp834V34FGttTtt22B.1.1390.001466
ORF1ab/nsp834V34FGttTtt22B.1.177.230.006472
ORF1ab/nsp834V34FGttTtt22B.1.1990.008264
ORF1ab/nsp834V34FGttTtt22B.1.5610.000794
ORF1ab/nsp834V34FGttTtt22B.1.5750.000607
ORF1ab/nsp834V34FGttTtt22D.20.00015
ORF1ab/nsp834V34FGttTtt22P.1.140.000096
ORF1ab/nsp834V34FGttTtt11A.60.005128
ORF1ab/nsp834V34FGttTtt11AY.1110.000183
ORF1ab/nsp834V34FGttTtt11AY.1200.000037
ORF1ab/nsp834V34FGttTtt11AY.140.000088
ORF1ab/nsp834V34FGttTtt11AY.160.00038
ORF1ab/nsp834V34FGttTtt11AY.300.000396
ORF1ab/nsp834V34FGttTtt11AY.340.000097
ORF1ab/nsp834V34FGttTtt11AY.480.000465
ORF1ab/nsp834V34FGttTtt11AY.530.000288
ORF1ab/nsp834V34FGttTtt11AY.560.001605
ORF1ab/nsp834V34FGttTtt11AY.680.000274
ORF1ab/nsp834V34FGttTtt11AY.690.000187
ORF1ab/nsp834V34FGttTtt11AY.710.000475
ORF1ab/nsp834V34FGttTtt11AY.80.000606
ORF1ab/nsp834V34FGttTtt11AY.90.000068
ORF1ab/nsp834V34FGttTtt11AY.9.10.000084
ORF1ab/nsp834V34FGttTtt11AY.910.00073
ORF1ab/nsp834V34FGttTtt11AY.980.000079
ORF1ab/nsp834V34FGttTtt11B.1.1.1530.001095
ORF1ab/nsp834V34FGttTtt11B.1.1.1590.004673
ORF1ab/nsp834V34FGttTtt11B.1.1.2690.001353
ORF1ab/nsp834V34FGttTtt11B.1.1.2720.005208
ORF1ab/nsp834V34FGttTtt11B.1.1.2820.011628
ORF1ab/nsp834V34FGttTtt11B.1.1.3060.000438
ORF1ab/nsp834V34FGttTtt11B.1.1.3070.002532
ORF1ab/nsp834V34FGttTtt11B.1.1.3180.000302
ORF1ab/nsp834V34FGttTtt11B.1.1.370.000193
ORF1ab/nsp834V34FGttTtt11B.1.1.3970.002252
ORF1ab/nsp834V34FGttTtt11B.1.1.4420.018519
ORF1ab/nsp834V34FGttTtt11B.1.1.5170.006803
ORF1ab/nsp834V34FGttTtt11B.1.1.820.038462
ORF1ab/nsp834V34FGttTtt11B.1.1470.000756
ORF1ab/nsp834V34FGttTtt11B.1.160.230.004831
ORF1ab/nsp834V34FGttTtt11B.1.1640.014925
ORF1ab/nsp834V34FGttTtt11B.1.177.420.000894
ORF1ab/nsp834V34FGttTtt11B.1.177.750.001041
ORF1ab/nsp834V34FGttTtt11B.1.2050.02381
ORF1ab/nsp834V34FGttTtt11B.1.2200.01087
ORF1ab/nsp834V34FGttTtt11B.1.2370.004975
ORF1ab/nsp834V34FGttTtt11B.1.2400.000216
ORF1ab/nsp834V34FGttTtt11B.1.2580.000067
ORF1ab/nsp834V34FGttTtt11B.1.258.170.000104
ORF1ab/nsp834V34FGttTtt11B.1.3510.00003
ORF1ab/nsp834V34FGttTtt11B.1.351.30.000876
ORF1ab/nsp834V34FGttTtt11B.1.36.220.001208
ORF1ab/nsp834V34FGttTtt11B.1.4130.004255
ORF1ab/nsp834V34FGttTtt11B.1.4480.002625
ORF1ab/nsp834V34FGttTtt11B.1.4530.003236
ORF1ab/nsp834V34FGttTtt11B.1.4590.004082
ORF1ab/nsp834V34FGttTtt11B.1.5270.003704
ORF1ab/nsp834V34FGttTtt11B.1.5330.009615
ORF1ab/nsp834V34FGttTtt11B.1.5970.00463
ORF1ab/nsp834V34FGttTtt11B.350.007812
ORF1ab/nsp834V34FGttTtt11B.40.002208
ORF1ab/nsp834V34FGttTtt11C.370.000116
ORF1ab/nsp834V34FGttTtt11P.1.150.000232
ORF1ab/nsp834V34FGttTtt11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.