CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 34 | V34F | V3976F | nonsyn | Gtt | Ttt | 5191 | 5191 | 1 | 12191-12193 |
Details of the mutation V34F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 5191 | 5191 | All | 0.000993 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1095 | 1095 | AY.25 | 0.006586 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1034 | 1034 | AY.44 | 0.006294 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 535 | 535 | B.1.1.232 | 0.970962 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 359 | 359 | AY.4 | 0.000559 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 335 | 335 | B.1.1.141 | 0.674044 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 262 | 262 | AY.43 | 0.001161 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 212 | 212 | B.1.617.2 | 0.000798 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 110 | 110 | B.1 | 0.001008 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 93 | 93 | AY.103 | 0.000577 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 89 | 89 | B.1.1.7 | 0.00008 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 79 | 79 | AK.1 | 1 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 77 | 77 | B.1.1.218 | 0.592308 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 77 | 77 | B.1.36.10 | 0.368421 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 64 | 64 | B.1.2 | 0.000564 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 54 | 54 | AY.12 | 0.017067 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 49 | 49 | B.1.1 | 0.000889 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 49 | 49 | B.1.177 | 0.000645 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 30 | 30 | B.1.517 | 0.01281 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 25 | 25 | B.1.1.100 | 1 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 22 | 22 | AK.2 | 1 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 22 | 22 | AY.46.6 | 0.001589 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 22 | 22 | B.1.526 | 0.000517 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 22 | 22 | P.1 | 0.000347 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 19 | 19 | AY.4.5 | 0.002042 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 18 | 18 | AY.4.2 | 0.00039 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 17 | 17 | AY.104 | 0.03373 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 16 | 16 | B.1.1.519 | 0.000635 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 16 | 16 | C.36 | 0.014572 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 13 | 13 | AY.116 | 0.003728 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 13 | 13 | B.1.1.289 | 0.027083 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 13 | 13 | B.1.243 | 0.000905 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 12 | 12 | A.29 | 0.06383 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 12 | 12 | AY.114 | 0.002773 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 9 | 9 | AY.118 | 0.000564 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 9 | 9 | B.1.1.47 | 0.048128 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 7 | 7 | B.1.1.369 | 0.003124 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 5 | 5 | B.1.396 | 0.003529 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 4 | 4 | B.1.1.398 | 0.012903 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 4 | 4 | B.1.293 | 0.05 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 4 | 4 | B.1.433 | 0.01278 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 4 | 4 | B.1.588 | 0.00364 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 3 | 3 | AV.1 | 0.015152 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 3 | 3 | B.1.177.33 | 0.004934 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B.1.177.23 | 0.006472 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.272 | 0.005208 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.1.82 | 0.038462 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.205 | 0.02381 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.220 | 0.01087 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp8 | 34 | V34F | Gtt | Ttt | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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