CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 160 | V160I | V4102I | nonsyn | Gta | Ata | 847 | 845 | 0.997639 | 12569-12571 |
ORF1ab/nsp8 | 160 | V160I | V4102I | nonsyn | GtA | AtT | 847 | 2 | 0.00236128 | 12569-12571 |
Details of the mutation V160I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 845 | 847 | All | 0.000162 |
ORF1ab/nsp8 | 160 | V160I | GtA | AtT | 2 | 847 | All | 0 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 167 | 167 | B.1.617.2 | 0.000629 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 132 | 132 | B.1.632 | 0.885906 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 74 | 74 | AY.102 | 0.001962 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 66 | 66 | AY.43 | 0.000292 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 51 | 51 | AY.103 | 0.000317 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 47 | 47 | AY.4 | 0.000073 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 26 | 26 | AY.118 | 0.001629 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 25 | 25 | AY.3 | 0.000249 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 20 | 20 | AY.25 | 0.00012 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 16 | 16 | AY.39 | 0.000395 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 15 | 15 | B.1.221 | 0.001065 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 7 | 7 | B.1.619 | 0.006098 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp8 | 160 | V160I | GtA | AtT | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.49 | 0.00639 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | B.1.281 | 0.043478 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B | 0.000128 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.344 | 0.008197 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp8 | 160 | V160I | Gta | Ata | 1 | 1 | C.36 | 0.000911 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|