CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : Mut = T68I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp868T68IT4010InonsynaCcaTc5195180.99807312293-12295
ORF1ab/nsp868T68IT4010InonsynaCCaTT51910.0019267812293-12295

Details of the mutation T68I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp868T68IaCcaTc518519All0.000099
ORF1ab/nsp868T68IaCCaTT1519All0
ORF1ab/nsp868T68IaCcaTc5455B.1.1.70.000048
ORF1ab/nsp868T68IaCCaTT155B.1.1.70.000001
ORF1ab/nsp868T68IaCcaTc4949AY.430.000217
ORF1ab/nsp868T68IaCcaTc4343B.1.3041
ORF1ab/nsp868T68IaCcaTc3838AY.250.000229
ORF1ab/nsp868T68IaCcaTc3737AY.440.000225
ORF1ab/nsp868T68IaCcaTc2626AY.40.00004
ORF1ab/nsp868T68IaCcaTc2626B.1.617.20.000098
ORF1ab/nsp868T68IaCcaTc2222P.10.000347
ORF1ab/nsp868T68IaCcaTc2020B.10.000183
ORF1ab/nsp868T68IaCcaTc1818B.1.2210.001279
ORF1ab/nsp868T68IaCcaTc1313B.1.20.000114
ORF1ab/nsp868T68IaCcaTc1313B.1.4290.000306
ORF1ab/nsp868T68IaCcaTc77B.1.10.000127
ORF1ab/nsp868T68IaCcaTc77B.1.1770.000092
ORF1ab/nsp868T68IaCcaTc66AY.1030.000037
ORF1ab/nsp868T68IaCcaTc66AY.1200.000223
ORF1ab/nsp868T68IaCcaTc66B.1.1.2140.000333
ORF1ab/nsp868T68IaCcaTc66B.1.1.3470.109091
ORF1ab/nsp868T68IaCcaTc55AY.30.00005
ORF1ab/nsp868T68IaCcaTc55AY.450.000608
ORF1ab/nsp868T68IaCcaTc55AY.980.000395
ORF1ab/nsp868T68IaCcaTc55B.1.1.5190.000199
ORF1ab/nsp868T68IaCcaTc44AY.290.000063
ORF1ab/nsp868T68IaCcaTc44AY.340.000388
ORF1ab/nsp868T68IaCcaTc44AY.4.2.10.000596
ORF1ab/nsp868T68IaCcaTc44B.1.177.690.005935
ORF1ab/nsp868T68IaCcaTc44B.1.3620.006163
ORF1ab/nsp868T68IaCcaTc44B.1.4270.000202
ORF1ab/nsp868T68IaCcaTc44B.1.617.10.000516
ORF1ab/nsp868T68IaCcaTc33AY.1000.000138
ORF1ab/nsp868T68IaCcaTc33AY.1020.00008
ORF1ab/nsp868T68IaCcaTc33AY.1190.000106
ORF1ab/nsp868T68IaCcaTc33AY.230.000209
ORF1ab/nsp868T68IaCcaTc33AY.39.10.000119
ORF1ab/nsp868T68IaCcaTc33AY.420.000121
ORF1ab/nsp868T68IaCcaTc33B.1.5260.000071
ORF1ab/nsp868T68IaCcaTc22AY.330.000134
ORF1ab/nsp868T68IaCcaTc22AY.46.60.000144
ORF1ab/nsp868T68IaCcaTc22B.1.177.730.001133
ORF1ab/nsp868T68IaCcaTc22B.1.177.870.001456
ORF1ab/nsp868T68IaCcaTc22B.1.2340.000264
ORF1ab/nsp868T68IaCcaTc22B.1.3510.000059
ORF1ab/nsp868T68IaCcaTc22B.1.36.380.003284
ORF1ab/nsp868T68IaCcaTc22B.1.6210.000177
ORF1ab/nsp868T68IaCcaTc22D.20.00015
ORF1ab/nsp868T68IaCcaTc11A.10.000282
ORF1ab/nsp868T68IaCcaTc11AY.16.10.00047
ORF1ab/nsp868T68IaCcaTc11AY.4.20.000022
ORF1ab/nsp868T68IaCcaTc11AY.4.50.000107
ORF1ab/nsp868T68IaCcaTc11AY.470.000031
ORF1ab/nsp868T68IaCcaTc11AY.50.000021
ORF1ab/nsp868T68IaCcaTc11AY.510.000909
ORF1ab/nsp868T68IaCcaTc11AY.690.000187
ORF1ab/nsp868T68IaCcaTc11AY.9.20.000037
ORF1ab/nsp868T68IaCcaTc11AY.910.00073
ORF1ab/nsp868T68IaCcaTc11AY.98.10.000048
ORF1ab/nsp868T68IaCcaTc11B.1.1.1530.001095
ORF1ab/nsp868T68IaCcaTc11B.1.1.2320.001815
ORF1ab/nsp868T68IaCcaTc11B.1.1.280.000311
ORF1ab/nsp868T68IaCcaTc11B.1.1.3180.000302
ORF1ab/nsp868T68IaCcaTc11B.1.1.3750.011905
ORF1ab/nsp868T68IaCcaTc11B.1.1.390.00051
ORF1ab/nsp868T68IaCcaTc11B.1.1.4160.000905
ORF1ab/nsp868T68IaCcaTc11B.1.1.5210.005348
ORF1ab/nsp868T68IaCcaTc11B.1.1.5230.001563
ORF1ab/nsp868T68IaCcaTc11B.1.1390.000733
ORF1ab/nsp868T68IaCcaTc11B.1.1470.000756
ORF1ab/nsp868T68IaCcaTc11B.1.177.210.000076
ORF1ab/nsp868T68IaCcaTc11B.1.177.60.000977
ORF1ab/nsp868T68IaCcaTc11B.1.214.30.007143
ORF1ab/nsp868T68IaCcaTc11B.1.2410.000812
ORF1ab/nsp868T68IaCcaTc11B.1.3670.000792
ORF1ab/nsp868T68IaCcaTc11B.1.5250.000113
ORF1ab/nsp868T68IaCcaTc11B.1.575.10.002439
ORF1ab/nsp868T68IaCcaTc11B.1.6230.000536
ORF1ab/nsp868T68IaCcaTc11B.1.6300.005236
ORF1ab/nsp868T68IaCcaTc11B.1.930.000934
ORF1ab/nsp868T68IaCcaTc11P.1.120.000484
ORF1ab/nsp868T68IaCcaTc11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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