CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 141 | T141T | T4083T | syn | acG | acT | 4566 | 4145 | 0.907797 | 12512-12514 |
ORF1ab/nsp8 | 141 | T141T | T4083T | syn | acG | acA | 4566 | 404 | 0.0884801 | 12512-12514 |
ORF1ab/nsp8 | 141 | T141T | T4083T | syn | acG | acC | 4566 | 17 | 0.00372317 | 12512-12514 |
Details of the mutation T141T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4145 | 4566 | All | 0.000793 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 404 | 4566 | All | 0.000077 |
ORF1ab/nsp8 | 141 | T141T | acG | acC | 17 | 4566 | All | 0.000003 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 599 | 667 | B.1.1.7 | 0.000536 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 66 | 667 | B.1.1.7 | 0.000059 |
ORF1ab/nsp8 | 141 | T141T | acG | acC | 2 | 667 | B.1.1.7 | 0.000002 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 425 | 448 | AY.4 | 0.000661 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 22 | 448 | AY.4 | 0.000034 |
ORF1ab/nsp8 | 141 | T141T | acG | acC | 1 | 448 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 328 | 328 | AW.1 | 1 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 205 | 217 | B.1.160 | 0.006393 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 12 | 217 | B.1.160 | 0.000374 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 202 | 210 | B.1.2 | 0.001779 |
ORF1ab/nsp8 | 141 | T141T | acG | acC | 5 | 210 | B.1.2 | 0.000044 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 3 | 210 | B.1.2 | 0.000026 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 190 | 190 | B.1.1.272 | 0.989583 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 173 | 190 | B.1.617.2 | 0.000651 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 17 | 190 | B.1.617.2 | 0.000064 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 105 | 112 | AY.43 | 0.000465 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 7 | 112 | AY.43 | 0.000031 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 111 | 112 | B.1.429 | 0.002612 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 112 | B.1.429 | 0.000024 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 81 | 97 | AY.44 | 0.000493 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 16 | 97 | AY.44 | 0.000097 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 70 | 94 | B.1 | 0.000641 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 23 | 94 | B.1 | 0.000211 |
ORF1ab/nsp8 | 141 | T141T | acG | acC | 1 | 94 | B.1 | 0.000009 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 80 | 86 | AY.103 | 0.000497 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 6 | 86 | AY.103 | 0.000037 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 75 | 77 | AY.3 | 0.000746 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 2 | 77 | AY.3 | 0.00002 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 66 | 68 | AY.102 | 0.00175 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 2 | 68 | AY.102 | 0.000053 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 67 | 67 | AY.25 | 0.000403 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 67 | 67 | AY.75 | 0.003754 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 65 | 65 | B.1.400 | 0.027885 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 60 | 63 | AY.39 | 0.001483 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 3 | 63 | AY.39 | 0.000074 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 55 | 56 | P.1 | 0.000866 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 56 | P.1 | 0.000016 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 52 | 54 | B.1.1.519 | 0.002065 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 2 | 54 | B.1.1.519 | 0.000079 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 45 | 46 | AY.75.1 | 0.008114 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 46 | AY.75.1 | 0.00018 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 26 | 46 | B.1.526 | 0.000611 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 20 | 46 | B.1.526 | 0.00047 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 46 | 46 | P.2 | 0.008585 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 44 | 44 | B.1.1.157 | 0.040183 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 44 | 44 | B.1.349 | 0.031451 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 39 | 42 | B.1.1 | 0.000707 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 3 | 42 | B.1.1 | 0.000054 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 36 | 42 | B.1.177 | 0.000474 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 6 | 42 | B.1.177 | 0.000079 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 41 | 41 | AY.9 | 0.002771 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 38 | 38 | AY.33 | 0.002538 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 35 | 36 | AY.61 | 0.003667 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 36 | AY.61 | 0.000105 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 34 | 34 | B.1.1.1 | 0.011107 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 29 | 31 | B.1.1.70 | 0.009891 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 31 | B.1.1.70 | 0.000682 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 28 | 29 | B.1.351 | 0.000832 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 29 | B.1.351 | 0.00003 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 27 | 28 | B.1.1.37 | 0.005207 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 28 | B.1.1.37 | 0.000193 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 27 | 27 | AY.20 | 0.001049 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 24 | 24 | AE.8 | 0.011736 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 22 | 24 | AY.4.2 | 0.000477 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 2 | 24 | AY.4.2 | 0.000043 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 13 | 21 | AY.23 | 0.000907 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 8 | 21 | AY.23 | 0.000558 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 15 | 21 | P.1.14 | 0.000717 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 6 | 21 | P.1.14 | 0.000287 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 17 | 18 | AY.42 | 0.000684 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 18 | AY.42 | 0.00004 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 17 | 17 | B.1.1.222 | 0.003468 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 16 | 16 | B.1.416 | 0.020305 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 16 | 16 | B.1.628 | 0.005638 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 15 | 15 | AY.29 | 0.000237 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 14 | 14 | AY.6 | 0.000576 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 11 | 13 | AY.46.4 | 0.00181 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 13 | AY.46.4 | 0.000329 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 11 | 12 | B.1.177.81 | 0.002083 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 12 | B.1.177.81 | 0.000189 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 10 | 10 | AY.35 | 0.00233 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 10 | 10 | AY.98 | 0.00079 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 10 | 10 | P.1.15 | 0.002323 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 9 | 9 | A.1 | 0.002537 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 9 | 9 | B.1.199 | 0.03719 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 7 | 8 | AY.39.1 | 0.000277 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 8 | AY.39.1 | 0.00004 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 8 | 8 | AY.79 | 0.009685 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 8 | 8 | B.1.517 | 0.003416 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 8 | 8 | B.1.550 | 0.109589 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 7 | 7 | AY.110 | 0.000789 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 7 | 7 | AY.116 | 0.002007 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 6 | 7 | AY.5 | 0.000124 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 7 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 7 | 7 | B.1.1.189 | 0.01059 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 7 | 7 | B.1.1.217 | 0.025455 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 7 | B.1.221 | 0.000213 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 3 | 7 | B.1.221 | 0.000213 |
ORF1ab/nsp8 | 141 | T141T | acG | acC | 1 | 7 | B.1.221 | 0.000071 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 6 | 7 | B.1.427 | 0.000303 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 7 | B.1.427 | 0.00005 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 5 | 6 | AY.100 | 0.00023 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 6 | AY.100 | 0.000046 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 6 | 6 | B.1.1.464 | 0.008837 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 6 | 6 | B.1.265 | 0.007624 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 6 | 6 | B.1.366 | 0.029268 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 5 | A | 0.001548 |
ORF1ab/nsp8 | 141 | T141T | acG | acC | 1 | 5 | A | 0.000387 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 3 | 5 | AY.4.3 | 0.002525 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 5 | AY.4.3 | 0.001684 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 5 | AY.47 | 0.000124 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 5 | AY.47 | 0.000031 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 5 | B | 0.000383 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 2 | 5 | B | 0.000256 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 5 | 5 | B.1.1.154 | 0.2 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 5 | 5 | B.1.620 | 0.00473 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 5 | 5 | B.1.93 | 0.004669 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 4 | 4 | A.27 | 0.006623 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 4 | AY.108 | 0.003308 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 4 | AY.108 | 0.001103 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 3 | 4 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 4 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 4 | AY.4.5 | 0.000215 |
ORF1ab/nsp8 | 141 | T141T | acG | acC | 2 | 4 | AY.4.5 | 0.000215 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 4 | B.1.177.58 | 0.005326 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 2 | 4 | B.1.243 | 0.000139 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 4 | B.1.243 | 0.000139 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 4 | B.1.258.17 | 0.000312 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 4 | B.1.258.17 | 0.000104 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 4 | B.1.36.37 | 0.011111 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 4 | B.1.612 | 0.01061 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 3 | 4 | P.1.17 | 0.000485 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 4 | P.1.17 | 0.000162 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 4 | P.1.7 | 0.000958 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 4 | P.1.7 | 0.000319 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 4 | 4 | P.7 | 0.017467 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 3 | AY.114 | 0.000462 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 3 | AY.114 | 0.000231 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 3 | AY.46 | 0.000208 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 3 | AY.46 | 0.000104 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 3 | B.1.36.1 | 0.003421 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 3 | B.1.466.2 | 0.000782 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 3 | B.1.466.2 | 0.000391 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 2 | 3 | C.37 | 0.000232 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 3 | C.37 | 0.000116 |
ORF1ab/nsp8 | 141 | T141T | acG | acC | 2 | 3 | D.2 | 0.00015 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 3 | D.2 | 0.000075 |
ORF1ab/nsp8 | 141 | T141T | acG | acC | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | A.9 | 0.090909 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 2 | AY.27 | 0.000065 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 2 | AY.27 | 0.000065 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 2 | AY.40 | 0.000964 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 2 | AY.40 | 0.000964 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 2 | B.1.1.216 | 0.00089 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 2 | B.1.1.216 | 0.00089 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 2 | B.1.157 | 0.002985 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 2 | B.1.157 | 0.002985 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.179 | 0.007519 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.570 | 0.005882 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | B.1.575.1 | 0.004878 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AE.7 | 0.083333 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.31 | 0.066667 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.291 | 0.019231 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp8 | 141 | T141T | acG | acA | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp8 | 141 | T141T | acG | acT | 1 | 1 | S.1 | 0.00495 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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