CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 141 | T141M | T4083M | nonsyn | aCg | aTg | 16551 | 16551 | 1 | 12512-12514 |
Details of the mutation T141M within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 16551 | 16551 | All | 0.003166 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4687 | 4687 | AY.3 | 0.046619 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2193 | 2193 | AY.4 | 0.003413 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1938 | 1938 | B.1.1.7 | 0.001735 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 997 | 997 | B.1.617.2 | 0.003754 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 645 | 645 | B.1.2 | 0.005679 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 334 | 334 | B.1 | 0.003059 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 320 | 320 | AY.44 | 0.001948 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 281 | 281 | AY.9.2 | 0.010321 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 275 | 275 | AY.25 | 0.001654 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 245 | 245 | AY.100 | 0.011272 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 201 | 201 | AY.20 | 0.007812 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 193 | 193 | AY.43 | 0.000855 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 184 | 184 | B.1.429 | 0.004329 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 182 | 182 | AY.5 | 0.003758 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 144 | 144 | B.1.177 | 0.001896 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 141 | 141 | AY.9 | 0.009531 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 108 | 108 | AY.75 | 0.00605 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 108 | 108 | B.1.621 | 0.00956 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 107 | 107 | B.1.351 | 0.003181 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 100 | 100 | AY.102 | 0.002651 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 90 | 90 | AY.103 | 0.000559 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 90 | 90 | P.1.17 | 0.014558 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 89 | 89 | AY.119 | 0.003142 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 86 | 86 | B.1.526 | 0.002021 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 84 | 84 | AY.39 | 0.002076 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 82 | 82 | B.1.1 | 0.001488 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 76 | 76 | AY.46 | 0.00791 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 71 | 71 | P.1 | 0.001119 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 69 | 69 | AY.92 | 0.019822 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 61 | 61 | B.1.36.23 | 1 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 58 | 58 | B.1.503 | 0.144279 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 57 | 57 | AY.47 | 0.001773 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 54 | 54 | B.1.617.1 | 0.006964 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 50 | 50 | B.1.470 | 0.070225 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 49 | 49 | B.1.221 | 0.003481 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 49 | 49 | B.1.427 | 0.002474 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 48 | 48 | AY.4.2 | 0.001041 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 46 | 46 | AY.4.5 | 0.004945 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 46 | 46 | B.1.565 | 0.037277 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 42 | 42 | AY.42 | 0.00169 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 41 | 41 | B.1.164 | 0.61194 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 40 | 40 | B.1.1.519 | 0.001588 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 40 | 40 | B.1.177.60 | 0.008737 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 40 | 40 | B.1.177.77 | 0.029049 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 38 | 38 | AY.29 | 0.000599 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 36 | 36 | AY.117 | 0.003043 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 33 | 33 | AY.26 | 0.000934 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 33 | 33 | B.1.596 | 0.002876 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 31 | 31 | AY.3.1 | 0.002643 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 31 | 31 | B.1.36 | 0.004523 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 30 | 30 | B.1.1.284 | 0.003222 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 29 | 29 | AY.23 | 0.002023 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 29 | 29 | B.1.525 | 0.003282 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 27 | 27 | AY.84 | 0.011811 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 26 | 26 | AY.34 | 0.002521 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 26 | 26 | B.1.577 | 0.017869 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 25 | 25 | B.1.177.44 | 0.012974 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 25 | 25 | B.1.400 | 0.010725 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 24 | 24 | B.1.243 | 0.00167 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 23 | 23 | B.1.1.241 | 0.047619 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 21 | 21 | B.1.595 | 0.00548 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 21 | 21 | D.2 | 0.001576 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 20 | 20 | AY.51 | 0.018182 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 20 | 20 | B.1.1.420 | 0.020121 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 19 | 19 | AY.69 | 0.003547 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 18 | 18 | AY.116.1 | 0.005606 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 18 | 18 | AY.118 | 0.001128 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 17 | 17 | AY.33 | 0.001135 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 17 | 17 | AY.95 | 0.012938 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 17 | 17 | B.1.1.1 | 0.005554 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 17 | 17 | B.1.177.15 | 0.010726 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 17 | 17 | B.1.258 | 0.001131 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 16 | 16 | AY.120 | 0.000595 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 16 | 16 | AY.14 | 0.001408 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 16 | 16 | AY.29.1 | 0.003528 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 16 | 16 | B.1.160 | 0.000499 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 15 | 15 | AY.19 | 0.017104 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 15 | 15 | AY.39.1 | 0.000594 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 15 | 15 | B.1.177.73 | 0.008494 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 15 | 15 | B.1.36.36 | 0.009031 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 15 | 15 | B.1.626 | 0.085714 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 14 | 14 | AY.113 | 0.001993 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 14 | 14 | B.1.36.29 | 0.007243 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 13 | 13 | AY.45 | 0.001582 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 13 | 13 | B.1.1.214 | 0.000721 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 13 | 13 | B.1.177.7 | 0.002143 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 13 | 13 | B.1.397 | 0.063107 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 13 | 13 | B.1.438.2 | 0.25 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 13 | 13 | C.37 | 0.001509 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 12 | 12 | AY.107 | 0.005592 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 12 | 12 | B.1.234 | 0.001583 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 12 | 12 | B.1.620 | 0.011353 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 11 | 11 | AL.1 | 0.142857 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 11 | 11 | AY.27 | 0.000712 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 11 | 11 | B.1.1.371 | 0.114583 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 11 | 11 | B.1.564 | 0.004685 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 11 | 11 | B.1.587 | 0.020873 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 10 | 10 | A.2.5 | 0.00499 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 10 | 10 | AY.4.2.1 | 0.00149 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 10 | 10 | B.1.1.306 | 0.004384 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 9 | 9 | AY.1 | 0.003562 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 9 | 9 | B.1.1.291 | 0.006682 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 9 | 9 | C.36 | 0.008197 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 8 | 8 | B.1.177.52 | 0.01406 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 8 | 8 | B.1.351.2 | 0.002421 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 7 | 7 | AY.64 | 0.004167 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 7 | 7 | B.1.1.298 | 0.006034 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 7 | 7 | B.1.147 | 0.005291 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 7 | 7 | B.1.349 | 0.005004 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 7 | 7 | B.1.369 | 0.001997 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 7 | 7 | B.1.381 | 0.054688 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 6 | 6 | AY.13 | 0.000966 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 6 | 6 | AY.37 | 0.001896 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 6 | 6 | B.1.1.464 | 0.008837 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 6 | 6 | B.1.1.51 | 0.010309 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 6 | 6 | B.1.177.82 | 0.002864 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 6 | 6 | B.1.36.8 | 0.006 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | AY.22 | 0.01046 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | AY.71 | 0.002375 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | AY.8 | 0.00303 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | B.1.1.220 | 0.009294 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | B.1.1.67 | 0.022831 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 5 | 5 | B.1.126 | 0.006378 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | A.2 | 0.002647 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | B | 0.000511 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | B.1.1.71 | 0.024242 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | B.1.558 | 0.018265 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | B.1.625 | 0.009412 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | C.33 | 0.235294 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | C.37.1 | 0.010471 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 4 | 4 | Q.7 | 0.004444 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.1.347 | 0.054545 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.139 | 0.002199 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.177.45 | 0.001144 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.448 | 0.007874 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.471 | 0.008197 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | B.1.93 | 0.002801 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | A | 0.000774 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.232 | 0.00363 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.240 | 0.00939 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.304 | 0.005618 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.328 | 0.033898 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.336 | 0.033333 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.339 | 0.021053 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.445 | 0.074074 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.36.24 | 0.012346 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.425 | 0.005988 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.537 | 0.04 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.567 | 0.006667 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.1.605 | 0.011905 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | C.26 | 0.014706 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | C.38 | 0.016129 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.177 | 0.019231 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.425 | 0.045455 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.435 | 0.034483 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.45 | 0.014085 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.203 | 0.0625 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.22.1 | 0.03125 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.258.12 | 0.007874 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.309 | 0.047619 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.578 | 0.017857 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | C.12 | 0.007194 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp8 | 141 | T141M | aCg | aTg | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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