CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : Mut = R51R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp851R51RR3993RsyncgTcgC3402980.87647112242-12244
ORF1ab/nsp851R51RR3993RsynCgTAgA340190.055882412242-12244
ORF1ab/nsp851R51RR3993RsyncgTcgA34080.023529412242-12244
ORF1ab/nsp851R51RR3993RsynCgTAgG34080.023529412242-12244
ORF1ab/nsp851R51RR3993RsyncgTcgG34070.020588212242-12244

Details of the mutation R51R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp851R51RcgTcgC298340All0.000057
ORF1ab/nsp851R51RCgTAgA19340All0.000004
ORF1ab/nsp851R51RCgTAgG8340All0.000002
ORF1ab/nsp851R51RcgTcgA8340All0.000002
ORF1ab/nsp851R51RcgTcgG7340All0.000001
ORF1ab/nsp851R51RcgTcgC3767B.1.1.70.000033
ORF1ab/nsp851R51RCgTAgA1667B.1.1.70.000014
ORF1ab/nsp851R51RCgTAgG767B.1.1.70.000006
ORF1ab/nsp851R51RcgTcgA467B.1.1.70.000004
ORF1ab/nsp851R51RcgTcgG367B.1.1.70.000003
ORF1ab/nsp851R51RcgTcgC2727AY.440.000164
ORF1ab/nsp851R51RcgTcgC2021B.1.1770.000263
ORF1ab/nsp851R51RcgTcgA121B.1.1770.000013
ORF1ab/nsp851R51RcgTcgC1919AY.260.000538
ORF1ab/nsp851R51RcgTcgC1414AY.40.000022
ORF1ab/nsp851R51RcgTcgC1313AY.30.000129
ORF1ab/nsp851R51RcgTcgC1012P.10.000158
ORF1ab/nsp851R51RCgTAgA112P.10.000016
ORF1ab/nsp851R51RcgTcgA112P.10.000016
ORF1ab/nsp851R51RcgTcgC1212Q.30.00174
ORF1ab/nsp851R51RcgTcgC1010AY.430.000044
ORF1ab/nsp851R51RcgTcgC89AY.250.000048
ORF1ab/nsp851R51RCgTAgA19AY.250.000006
ORF1ab/nsp851R51RcgTcgC99B.1.177.810.001704
ORF1ab/nsp851R51RcgTcgC99B.1.2210.000639
ORF1ab/nsp851R51RcgTcgC78B.10.000064
ORF1ab/nsp851R51RcgTcgG18B.10.000009
ORF1ab/nsp851R51RcgTcgC68B.1.10.000109
ORF1ab/nsp851R51RcgTcgG18B.1.10.000018
ORF1ab/nsp851R51RCgTAgG18B.1.10.000018
ORF1ab/nsp851R51RcgTcgC77AY.470.000218
ORF1ab/nsp851R51RcgTcgC77B.1.617.20.000026
ORF1ab/nsp851R51RcgTcgC66B.1.4290.000141
ORF1ab/nsp851R51RcgTcgC55AY.1090.003698
ORF1ab/nsp851R51RcgTcgC55AY.750.00028
ORF1ab/nsp851R51RcgTcgC55B.1.1.5190.000199
ORF1ab/nsp851R51RcgTcgC55B.1.20.000044
ORF1ab/nsp851R51RcgTcgC44AY.1030.000025
ORF1ab/nsp851R51RcgTcgC44AY.90.00027
ORF1ab/nsp851R51RcgTcgC33B.1.6370.000219
ORF1ab/nsp851R51RcgTcgC22AY.1140.000462
ORF1ab/nsp851R51RcgTcgC22AY.1190.000071
ORF1ab/nsp851R51RcgTcgC22AY.50.000041
ORF1ab/nsp851R51RcgTcgC22B0.000256
ORF1ab/nsp851R51RcgTcgC22B.1.177.170.001642
ORF1ab/nsp851R51RcgTcgC22B.1.177.40.000422
ORF1ab/nsp851R51RcgTcgC22B.1.177.600.000437
ORF1ab/nsp851R51RcgTcgC22B.1.3510.000059
ORF1ab/nsp851R51RCgTAgA12P.1.10.000318
ORF1ab/nsp851R51RcgTcgA12P.1.10.000318
ORF1ab/nsp851R51RcgTcgC11A.20.000662
ORF1ab/nsp851R51RcgTcgC11A.2.50.000499
ORF1ab/nsp851R51RcgTcgC11A.2.5.20.001572
ORF1ab/nsp851R51RcgTcgC11A.250.018182
ORF1ab/nsp851R51RcgTcgC11AY.1000.000046
ORF1ab/nsp851R51RcgTcgC11AY.1080.001103
ORF1ab/nsp851R51RcgTcgC11AY.1200.000037
ORF1ab/nsp851R51RcgTcgG11AY.20.000356
ORF1ab/nsp851R51RcgTcgC11AY.200.000039
ORF1ab/nsp851R51RcgTcgC11AY.360.000148
ORF1ab/nsp851R51RcgTcgC11AY.390.000025
ORF1ab/nsp851R51RcgTcgC11AY.60.000041
ORF1ab/nsp851R51RcgTcgC11AY.610.000105
ORF1ab/nsp851R51RcgTcgC11AY.710.000475
ORF1ab/nsp851R51RcgTcgC11B.1.1.3480.000796
ORF1ab/nsp851R51RcgTcgC11B.1.1.3720.000689
ORF1ab/nsp851R51RcgTcgC11B.1.1.4340.000349
ORF1ab/nsp851R51RcgTcgC11B.1.1.4530.008475
ORF1ab/nsp851R51RcgTcgC11B.1.1.500.000679
ORF1ab/nsp851R51RcgTcgC11B.1.177.560.000668
ORF1ab/nsp851R51RcgTcgA11B.1.258.110.000396
ORF1ab/nsp851R51RcgTcgC11B.1.258.140.00098
ORF1ab/nsp851R51RcgTcgC11B.1.3750.00082
ORF1ab/nsp851R51RcgTcgG11B.1.3910.001127
ORF1ab/nsp851R51RcgTcgC11B.1.3980.002976
ORF1ab/nsp851R51RcgTcgC11B.1.466.20.000391
ORF1ab/nsp851R51RcgTcgC11B.1.617.10.000129
ORF1ab/nsp851R51RcgTcgC11B.1.6210.000089
ORF1ab/nsp851R51RcgTcgC11B.1.6280.000352
ORF1ab/nsp851R51RcgTcgC11B.3.10.001658
ORF1ab/nsp851R51RcgTcgC11C.110.010638
ORF1ab/nsp851R51RcgTcgC11D.20.000075
ORF1ab/nsp851R51RcgTcgC11P.1.17.10.000875