CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 51 | R51C | R3993C | nonsyn | Cgt | Tgt | 2567 | 2567 | 1 | 12242-12244 |
Details of the mutation R51C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2567 | 2567 | All | 0.000491 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 739 | 739 | B.1.36.1 | 0.842645 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 352 | 352 | B.1.1.7 | 0.000315 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 131 | 131 | B.1.2 | 0.001154 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 124 | 124 | AY.4 | 0.000193 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 121 | 121 | AY.103 | 0.000751 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 114 | 114 | B.1.588 | 0.103731 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 100 | 100 | B.1 | 0.000916 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 84 | 84 | B.1.177 | 0.001106 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 62 | 62 | AY.42 | 0.002494 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 55 | 55 | B.1.1 | 0.000998 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 48 | 48 | AY.29 | 0.000757 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 40 | 40 | B.1.177.4 | 0.008442 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 37 | 37 | B.1.527 | 0.137037 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 34 | 34 | B.1.517 | 0.014518 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 27 | 27 | B.1.1.518 | 0.170886 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 24 | 24 | B.1.177.21 | 0.001835 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 21 | 21 | AY.43 | 0.000093 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 21 | 21 | B.1.234 | 0.002771 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 18 | 18 | AY.25 | 0.000108 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 12 | 12 | AY.39 | 0.000297 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 12 | 12 | B.1.474 | 0.022814 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 12 | 12 | B.1.595 | 0.003132 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 11 | 11 | B.1.1.33 | 0.00463 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 8 | 8 | B.1.1.317 | 0.003294 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 8 | 8 | B.1.609 | 0.003835 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 7 | 7 | B.1.1.37 | 0.00135 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 7 | 7 | B.55 | 0.020649 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 4 | 4 | B.1.478 | 0.047059 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 4 | 4 | C.4 | 0.04 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | AY.51 | 0.002727 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | B.1.1.157 | 0.00274 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | B.1.1.279 | 0.003363 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | B.1.258.19 | 0.021277 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | B.1.36.39 | 0.006652 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.1.145 | 0.074074 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.1.3 | 0.017391 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.260 | 0.006689 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | C.29 | 0.0625 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp8 | 51 | R51C | Cgt | Tgt | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|