CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : Mut = P10P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp810P10PP3952PsynccAccG1104597900.88637412119-12121
ORF1ab/nsp810P10PP3952PsynccAccT1104512310.11145312119-12121
ORF1ab/nsp810P10PP3952PsynccAccC11045240.0021729312119-12121

Details of the mutation P10P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp810P10PccAccG979011045All0.001872
ORF1ab/nsp810P10PccAccT123111045All0.000235
ORF1ab/nsp810P10PccAccC2411045All0.000005
ORF1ab/nsp810P10PccAccG92179217B.1.438.10.98863
ORF1ab/nsp810P10PccAccT799799B.1.177.860.146579
ORF1ab/nsp810P10PccAccG215215AY.690.040134
ORF1ab/nsp810P10PccAccG4383B.1.1.70.000038
ORF1ab/nsp810P10PccAccT3683B.1.1.70.000032
ORF1ab/nsp810P10PccAccC483B.1.1.70.000004
ORF1ab/nsp810P10PccAccG3770AY.40.000058
ORF1ab/nsp810P10PccAccT3270AY.40.00005
ORF1ab/nsp810P10PccAccC170AY.40.000002
ORF1ab/nsp810P10PccAccT5964B.1.10.00107
ORF1ab/nsp810P10PccAccG564B.1.10.000091
ORF1ab/nsp810P10PccAccG4562B.10.000412
ORF1ab/nsp810P10PccAccT1662B.10.000147
ORF1ab/nsp810P10PccAccC162B.10.000009
ORF1ab/nsp810P10PccAccT3742P.10.000583
ORF1ab/nsp810P10PccAccG342P.10.000047
ORF1ab/nsp810P10PccAccC242P.10.000032
ORF1ab/nsp810P10PccAccT3240AY.430.000142
ORF1ab/nsp810P10PccAccG840AY.430.000035
ORF1ab/nsp810P10PccAccT3034B.1.20.000264
ORF1ab/nsp810P10PccAccG434B.1.20.000035
ORF1ab/nsp810P10PccAccT3333AY.4.2.10.004917
ORF1ab/nsp810P10PccAccG2029B.1.617.20.000075
ORF1ab/nsp810P10PccAccT929B.1.617.20.000034
ORF1ab/nsp810P10PccAccT1426AY.1030.000087
ORF1ab/nsp810P10PccAccG1126AY.1030.000068
ORF1ab/nsp810P10PccAccC126AY.1030.000006
ORF1ab/nsp810P10PccAccG2022AY.440.000122
ORF1ab/nsp810P10PccAccC122AY.440.000006
ORF1ab/nsp810P10PccAccT122AY.440.000006
ORF1ab/nsp810P10PccAccG1020AY.250.00006
ORF1ab/nsp810P10PccAccT1020AY.250.00006
ORF1ab/nsp810P10PccAccG1819AY.4.20.00039
ORF1ab/nsp810P10PccAccT119AY.4.20.000022
ORF1ab/nsp810P10PccAccT1015B.1.1.280.003112
ORF1ab/nsp810P10PccAccG515B.1.1.280.001556
ORF1ab/nsp810P10PccAccG1515B.1.4380.098039
ORF1ab/nsp810P10PccAccT1313B.1.2340.001715
ORF1ab/nsp810P10PccAccG712AY.30.00007
ORF1ab/nsp810P10PccAccT412AY.30.00004
ORF1ab/nsp810P10PccAccC112AY.30.00001
ORF1ab/nsp810P10PccAccT1111B.1.36.290.005691
ORF1ab/nsp810P10PccAccG1010AY.140.00088
ORF1ab/nsp810P10PccAccT1010B.1.4000.00429
ORF1ab/nsp810P10PccAccG1010B.1.6210.000885
ORF1ab/nsp810P10PccAccT99B.1.1.2370.048649
ORF1ab/nsp810P10PccAccT69B.1.1600.000187
ORF1ab/nsp810P10PccAccG39B.1.1600.000094
ORF1ab/nsp810P10PccAccT58AY.230.000349
ORF1ab/nsp810P10PccAccG38AY.230.000209
ORF1ab/nsp810P10PccAccT78AY.260.000198
ORF1ab/nsp810P10PccAccG18AY.260.000028
ORF1ab/nsp810P10PccAccT88B.1.3960.005646
ORF1ab/nsp810P10PccAccG77B.1.177.430.01034
ORF1ab/nsp810P10PccAccG36AY.390.000074
ORF1ab/nsp810P10PccAccT36AY.390.000074
ORF1ab/nsp810P10PccAccG55AY.750.00028
ORF1ab/nsp810P10PccAccC55B.1.1.3110.001791
ORF1ab/nsp810P10PccAccG45B.1.2210.000284
ORF1ab/nsp810P10PccAccC15B.1.2210.000071
ORF1ab/nsp810P10PccAccG55B.1.3110.001373
ORF1ab/nsp810P10PccAccG34AY.200.000117
ORF1ab/nsp810P10PccAccT14AY.200.000039
ORF1ab/nsp810P10PccAccG44B.1.177.600.000874
ORF1ab/nsp810P10PccAccC230.111111
ORF1ab/nsp810P10PccAccT130.055556
ORF1ab/nsp810P10PccAccG33B.1.1.250.001706
ORF1ab/nsp810P10PccAccT33B.1.1.5210.016043
ORF1ab/nsp810P10PccAccT23B.1.1770.000026
ORF1ab/nsp810P10PccAccG13B.1.1770.000013
ORF1ab/nsp810P10PccAccG13B.1.3510.00003
ORF1ab/nsp810P10PccAccT13B.1.3510.00003
ORF1ab/nsp810P10PccAccC13B.1.3510.00003
ORF1ab/nsp810P10PccAccG33B.1.4680.017143
ORF1ab/nsp810P10PccAccG23C.140.008658
ORF1ab/nsp810P10PccAccT13C.140.004329
ORF1ab/nsp810P10PccAccT33P.1.170.000485
ORF1ab/nsp810P10PccAccG22AY.1100.000225
ORF1ab/nsp810P10PccAccG22AY.1130.000285
ORF1ab/nsp810P10PccAccT12AY.330.000067
ORF1ab/nsp810P10PccAccG12AY.330.000067
ORF1ab/nsp810P10PccAccT22AY.370.000632
ORF1ab/nsp810P10PccAccG22AY.420.00008
ORF1ab/nsp810P10PccAccT12AY.50.000021
ORF1ab/nsp810P10PccAccG12AY.50.000021
ORF1ab/nsp810P10PccAccG22B.1.1.330.000842
ORF1ab/nsp810P10PccAccT22B.1.177.210.000153
ORF1ab/nsp810P10PccAccG22B.1.2430.000139
ORF1ab/nsp810P10PccAccG22B.1.3670.001585
ORF1ab/nsp810P10PccAccT22B.1.3770.009132
ORF1ab/nsp810P10PccAccT22B.1.5260.000047
ORF1ab/nsp810P10PccAccG22B.1.6180.008065
ORF1ab/nsp810P10PccAccG22B.1.90.012346
ORF1ab/nsp810P10PccAccG11AA.30.027027
ORF1ab/nsp810P10PccAccG11AY.1020.000027
ORF1ab/nsp810P10PccAccG11AY.1060.000335
ORF1ab/nsp810P10PccAccG11AY.1170.000085
ORF1ab/nsp810P10PccAccG11AY.1210.000135
ORF1ab/nsp810P10PccAccG11AY.130.000161
ORF1ab/nsp810P10PccAccT11AY.160.00038
ORF1ab/nsp810P10PccAccG11AY.270.000065
ORF1ab/nsp810P10PccAccG11AY.290.000016
ORF1ab/nsp810P10PccAccT11AY.320.000532
ORF1ab/nsp810P10PccAccT11AY.39.10.00004
ORF1ab/nsp810P10PccAccG11AY.4.50.000107
ORF1ab/nsp810P10PccAccC11AY.450.000122
ORF1ab/nsp810P10PccAccG11AY.60.000041
ORF1ab/nsp810P10PccAccG11AY.740.000116
ORF1ab/nsp810P10PccAccT11AY.850.000427
ORF1ab/nsp810P10PccAccT11AY.90.000068
ORF1ab/nsp810P10PccAccT11AY.930.000273
ORF1ab/nsp810P10PccAccG11AY.98.10.000048
ORF1ab/nsp810P10PccAccG11B.1.1.3180.000302
ORF1ab/nsp810P10PccAccT11B.1.1.3480.000796
ORF1ab/nsp810P10PccAccG11B.1.1.5190.00004
ORF1ab/nsp810P10PccAccG11B.1.1.700.000341
ORF1ab/nsp810P10PccAccG11B.1.177.100.000878
ORF1ab/nsp810P10PccAccC11B.1.177.160.000664
ORF1ab/nsp810P10PccAccG11B.1.177.70.000165
ORF1ab/nsp810P10PccAccG11B.1.177.730.000566
ORF1ab/nsp810P10PccAccC11B.1.177.870.000728
ORF1ab/nsp810P10PccAccG11B.1.2100.002132
ORF1ab/nsp810P10PccAccT11B.1.2580.000067
ORF1ab/nsp810P10PccAccC11B.1.360.000146
ORF1ab/nsp810P10PccAccT11B.1.4270.00005
ORF1ab/nsp810P10PccAccT11B.1.4360.001029
ORF1ab/nsp810P10PccAccG11B.1.5610.000397
ORF1ab/nsp810P10PccAccT11B.1.617.10.000129
ORF1ab/nsp810P10PccAccT11C.370.000116
ORF1ab/nsp810P10PccAccT11N.60.007092
ORF1ab/nsp810P10PccAccT11P.1.140.000048
ORF1ab/nsp810P10PccAccG11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.