CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 10 | P10P | P3952P | syn | ccA | ccG | 11045 | 9790 | 0.886374 | 12119-12121 |
ORF1ab/nsp8 | 10 | P10P | P3952P | syn | ccA | ccT | 11045 | 1231 | 0.111453 | 12119-12121 |
ORF1ab/nsp8 | 10 | P10P | P3952P | syn | ccA | ccC | 11045 | 24 | 0.00217293 | 12119-12121 |
Details of the mutation P10P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 9790 | 11045 | All | 0.001872 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1231 | 11045 | All | 0.000235 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 24 | 11045 | All | 0.000005 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 9217 | 9217 | B.1.438.1 | 0.98863 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 799 | 799 | B.1.177.86 | 0.146579 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 215 | 215 | AY.69 | 0.040134 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 43 | 83 | B.1.1.7 | 0.000038 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 36 | 83 | B.1.1.7 | 0.000032 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 4 | 83 | B.1.1.7 | 0.000004 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 37 | 70 | AY.4 | 0.000058 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 32 | 70 | AY.4 | 0.00005 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 1 | 70 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 59 | 64 | B.1.1 | 0.00107 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 5 | 64 | B.1.1 | 0.000091 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 45 | 62 | B.1 | 0.000412 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 16 | 62 | B.1 | 0.000147 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 1 | 62 | B.1 | 0.000009 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 37 | 42 | P.1 | 0.000583 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 3 | 42 | P.1 | 0.000047 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 2 | 42 | P.1 | 0.000032 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 32 | 40 | AY.43 | 0.000142 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 8 | 40 | AY.43 | 0.000035 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 30 | 34 | B.1.2 | 0.000264 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 4 | 34 | B.1.2 | 0.000035 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 33 | 33 | AY.4.2.1 | 0.004917 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 20 | 29 | B.1.617.2 | 0.000075 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 9 | 29 | B.1.617.2 | 0.000034 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 14 | 26 | AY.103 | 0.000087 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 11 | 26 | AY.103 | 0.000068 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 1 | 26 | AY.103 | 0.000006 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 20 | 22 | AY.44 | 0.000122 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 1 | 22 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 22 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 10 | 20 | AY.25 | 0.00006 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 10 | 20 | AY.25 | 0.00006 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 18 | 19 | AY.4.2 | 0.00039 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 19 | AY.4.2 | 0.000022 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 10 | 15 | B.1.1.28 | 0.003112 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 5 | 15 | B.1.1.28 | 0.001556 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 15 | 15 | B.1.438 | 0.098039 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 13 | 13 | B.1.234 | 0.001715 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 7 | 12 | AY.3 | 0.00007 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 4 | 12 | AY.3 | 0.00004 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 1 | 12 | AY.3 | 0.00001 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 11 | 11 | B.1.36.29 | 0.005691 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 10 | 10 | AY.14 | 0.00088 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 10 | 10 | B.1.400 | 0.00429 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 9 | 9 | B.1.1.237 | 0.048649 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 6 | 9 | B.1.160 | 0.000187 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 3 | 9 | B.1.160 | 0.000094 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 5 | 8 | AY.23 | 0.000349 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 3 | 8 | AY.23 | 0.000209 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 7 | 8 | AY.26 | 0.000198 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 8 | AY.26 | 0.000028 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 8 | 8 | B.1.396 | 0.005646 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 7 | 7 | B.1.177.43 | 0.01034 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 3 | 6 | AY.39 | 0.000074 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 3 | 6 | AY.39 | 0.000074 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 5 | 5 | B.1.1.311 | 0.001791 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 4 | 5 | B.1.221 | 0.000284 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 1 | 5 | B.1.221 | 0.000071 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 3 | 4 | AY.20 | 0.000117 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 4 | AY.20 | 0.000039 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 2 | 3 | 0.111111 | |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 3 | 0.055556 | |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 3 | 3 | B.1.1.521 | 0.016043 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 2 | 3 | B.1.177 | 0.000026 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 3 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 3 | B.1.351 | 0.00003 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 3 | B.1.351 | 0.00003 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 1 | 3 | B.1.351 | 0.00003 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 3 | 3 | B.1.468 | 0.017143 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 2 | 3 | C.14 | 0.008658 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 3 | C.14 | 0.004329 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 2 | AY.33 | 0.000067 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 2 | AY.33 | 0.000067 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 2 | 2 | B.1.377 | 0.009132 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 2 | 2 | B.1.9 | 0.012346 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AA.3 | 0.027027 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp8 | 10 | P10P | ccA | ccG | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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