CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : Mut = L9F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp89L9FL3951FnonsynCttTtt18081808112116-12118

Details of the mutation L9F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp89L9FCttTtt18081808All0.000346
ORF1ab/nsp89L9FCttTtt505505B.1.1.70.000452
ORF1ab/nsp89L9FCttTtt157157D.20.011781
ORF1ab/nsp89L9FCttTtt126126B.1.3510.003746
ORF1ab/nsp89L9FCttTtt111111B.1.3460.145478
ORF1ab/nsp89L9FCttTtt103103B.1.1.700.03513
ORF1ab/nsp89L9FCttTtt7272B.1.1770.000948
ORF1ab/nsp89L9FCttTtt6868B.1.20.000599
ORF1ab/nsp89L9FCttTtt6161B.1.5260.001434
ORF1ab/nsp89L9FCttTtt5959B.1.10.00107
ORF1ab/nsp89L9FCttTtt4848AN.10.96
ORF1ab/nsp89L9FCttTtt3030B.10.000275
ORF1ab/nsp89L9FCttTtt2323P.10.000362
ORF1ab/nsp89L9FCttTtt2020N.50.035336
ORF1ab/nsp89L9FCttTtt1919B.1.1.2140.001054
ORF1ab/nsp89L9FCttTtt1717B.1.2210.001208
ORF1ab/nsp89L9FCttTtt1616B.1.4290.000376
ORF1ab/nsp89L9FCttTtt1515B.1.177.200.022762
ORF1ab/nsp89L9FCttTtt1414B.1.360.002043
ORF1ab/nsp89L9FCttTtt1414B.1.3690.003993
ORF1ab/nsp89L9FCttTtt1212AY.40.000019
ORF1ab/nsp89L9FCttTtt1111B.1.1.3020.022822
ORF1ab/nsp89L9FCttTtt1010B.1.5960.000871
ORF1ab/nsp89L9FCttTtt99AY.430.00004
ORF1ab/nsp89L9FCttTtt99B.1.1600.000281
ORF1ab/nsp89L9FCttTtt99B.1.177.70.001484
ORF1ab/nsp89L9FCttTtt99B.1.221.30.0075
ORF1ab/nsp89L9FCttTtt88B.1.36.80.008
ORF1ab/nsp89L9FCttTtt88B.1.617.20.00003
ORF1ab/nsp89L9FCttTtt77AY.9.20.000257
ORF1ab/nsp89L9FCttTtt77B0.000895
ORF1ab/nsp89L9FCttTtt77B.1.1.2840.000752
ORF1ab/nsp89L9FCttTtt77B.1.258.170.000728
ORF1ab/nsp89L9FCttTtt77B.1.4270.000353
ORF1ab/nsp89L9FCttTtt77B.1.5250.000792
ORF1ab/nsp89L9FCttTtt66B.1.1.5190.000238
ORF1ab/nsp89L9FCttTtt55AY.250.00003
ORF1ab/nsp89L9FCttTtt55AY.670.002321
ORF1ab/nsp89L9FCttTtt55B.1.1.3620.02809
ORF1ab/nsp89L9FCttTtt55C.370.00058
ORF1ab/nsp89L9FCttTtt44B.1.1.10.001307
ORF1ab/nsp89L9FCttTtt44B.1.2430.000278
ORF1ab/nsp89L9FCttTtt44B.1.438.10.000429
ORF1ab/nsp89L9FCttTtt44B.1.6370.000292
ORF1ab/nsp89L9FCttTtt44C.160.004242
ORF1ab/nsp89L9FCttTtt33AD.20.000657
ORF1ab/nsp89L9FCttTtt33AY.1030.000019
ORF1ab/nsp89L9FCttTtt33AY.1200.000112
ORF1ab/nsp89L9FCttTtt33B.1.1.100.003344
ORF1ab/nsp89L9FCttTtt33B.1.1.1530.003286
ORF1ab/nsp89L9FCttTtt33B.1.1.2160.002671
ORF1ab/nsp89L9FCttTtt33B.1.1.3010.003538
ORF1ab/nsp89L9FCttTtt33B.1.1.330.001263
ORF1ab/nsp89L9FCttTtt33B.1.177.510.013699
ORF1ab/nsp89L9FCttTtt33B.1.177.560.002003
ORF1ab/nsp89L9FCttTtt33B.1.2180.015464
ORF1ab/nsp89L9FCttTtt33B.1.36.290.001552
ORF1ab/nsp89L9FCttTtt33B.1.4000.001287
ORF1ab/nsp89L9FCttTtt33B.1.5170.001281
ORF1ab/nsp89L9FCttTtt33B.1.6210.000266
ORF1ab/nsp89L9FCttTtt33P.1.150.000697
ORF1ab/nsp89L9FCttTtt33P.20.00056
ORF1ab/nsp89L9FCttTtt33R.10.00027
ORF1ab/nsp89L9FCttTtt22AY.3.10.000171
ORF1ab/nsp89L9FCttTtt22AY.330.000134
ORF1ab/nsp89L9FCttTtt22AY.530.000575
ORF1ab/nsp89L9FCttTtt22AY.60.000082
ORF1ab/nsp89L9FCttTtt22AY.700.000417
ORF1ab/nsp89L9FCttTtt22B.1.1.2280.006098
ORF1ab/nsp89L9FCttTtt22B.1.177.120.000303
ORF1ab/nsp89L9FCttTtt22B.1.177.730.001133
ORF1ab/nsp89L9FCttTtt22B.1.390.007812
ORF1ab/nsp89L9FCttTtt22B.1.90.012346
ORF1ab/nsp89L9FCttTtt22C.360.001821
ORF1ab/nsp89L9FCttTtt22Q.80.00033
ORF1ab/nsp89L9FCttTtt11A0.000387
ORF1ab/nsp89L9FCttTtt11A.180.05
ORF1ab/nsp89L9FCttTtt11A.2.20.001689
ORF1ab/nsp89L9FCttTtt11A.2.50.000499
ORF1ab/nsp89L9FCttTtt11A.2.5.10.004808
ORF1ab/nsp89L9FCttTtt11AE.10.011364
ORF1ab/nsp89L9FCttTtt11AW.10.003049
ORF1ab/nsp89L9FCttTtt11AY.1000.000046
ORF1ab/nsp89L9FCttTtt11AY.1060.000335
ORF1ab/nsp89L9FCttTtt11AY.1140.000231
ORF1ab/nsp89L9FCttTtt11AY.1180.000063
ORF1ab/nsp89L9FCttTtt11AY.220.002092
ORF1ab/nsp89L9FCttTtt11AY.260.000028
ORF1ab/nsp89L9FCttTtt11AY.30.00001
ORF1ab/nsp89L9FCttTtt11AY.420.00004
ORF1ab/nsp89L9FCttTtt11AY.440.000006
ORF1ab/nsp89L9FCttTtt11AY.470.000031
ORF1ab/nsp89L9FCttTtt11AY.650.000533
ORF1ab/nsp89L9FCttTtt11AY.710.000475
ORF1ab/nsp89L9FCttTtt11AY.780.001541
ORF1ab/nsp89L9FCttTtt11AY.850.000427
ORF1ab/nsp89L9FCttTtt11AY.950.000761
ORF1ab/nsp89L9FCttTtt11B.1.1.1710.003676
ORF1ab/nsp89L9FCttTtt11B.1.1.1890.001513
ORF1ab/nsp89L9FCttTtt11B.1.1.2220.000204
ORF1ab/nsp89L9FCttTtt11B.1.1.250.000569
ORF1ab/nsp89L9FCttTtt11B.1.1.2690.001353
ORF1ab/nsp89L9FCttTtt11B.1.1.2790.001121
ORF1ab/nsp89L9FCttTtt11B.1.1.3220.008772
ORF1ab/nsp89L9FCttTtt11B.1.1.3260.001761
ORF1ab/nsp89L9FCttTtt11B.1.1.3440.010753
ORF1ab/nsp89L9FCttTtt11B.1.1.3630.005988
ORF1ab/nsp89L9FCttTtt11B.1.1.370.000193
ORF1ab/nsp89L9FCttTtt11B.1.1.3750.011905
ORF1ab/nsp89L9FCttTtt11B.1.1.410.006329
ORF1ab/nsp89L9FCttTtt11B.1.1.540.003021
ORF1ab/nsp89L9FCttTtt11B.1.1110.001175
ORF1ab/nsp89L9FCttTtt11B.1.160.160.000929
ORF1ab/nsp89L9FCttTtt11B.1.1730.026316
ORF1ab/nsp89L9FCttTtt11B.1.177.210.000076
ORF1ab/nsp89L9FCttTtt11B.1.177.440.000519
ORF1ab/nsp89L9FCttTtt11B.1.177.570.000281
ORF1ab/nsp89L9FCttTtt11B.1.177.600.000218
ORF1ab/nsp89L9FCttTtt11B.1.221.20.004016
ORF1ab/nsp89L9FCttTtt11B.1.2360.002053
ORF1ab/nsp89L9FCttTtt11B.1.2400.000216
ORF1ab/nsp89L9FCttTtt11B.1.2580.000067
ORF1ab/nsp89L9FCttTtt11B.1.258.220.002667
ORF1ab/nsp89L9FCttTtt11B.1.2600.003344
ORF1ab/nsp89L9FCttTtt11B.1.2930.0125
ORF1ab/nsp89L9FCttTtt11B.1.3180.038462
ORF1ab/nsp89L9FCttTtt11B.1.3400.004292
ORF1ab/nsp89L9FCttTtt11B.1.3490.000715
ORF1ab/nsp89L9FCttTtt11B.1.36.100.004785
ORF1ab/nsp89L9FCttTtt11B.1.3990.001934
ORF1ab/nsp89L9FCttTtt11B.1.4130.004255
ORF1ab/nsp89L9FCttTtt11B.1.4560.003268
ORF1ab/nsp89L9FCttTtt11B.1.4620.007246
ORF1ab/nsp89L9FCttTtt11B.1.466.20.000391
ORF1ab/nsp89L9FCttTtt11B.1.4730.019231
ORF1ab/nsp89L9FCttTtt11B.1.4970.000315
ORF1ab/nsp89L9FCttTtt11B.1.4990.00105
ORF1ab/nsp89L9FCttTtt11B.1.5030.002488
ORF1ab/nsp89L9FCttTtt11B.1.5090.000866
ORF1ab/nsp89L9FCttTtt11B.1.5240.001406
ORF1ab/nsp89L9FCttTtt11B.1.5400.009709
ORF1ab/nsp89L9FCttTtt11B.1.5430.01
ORF1ab/nsp89L9FCttTtt11B.1.5560.007519
ORF1ab/nsp89L9FCttTtt11B.1.5640.000426
ORF1ab/nsp89L9FCttTtt11B.1.6090.000479
ORF1ab/nsp89L9FCttTtt11B.1.617.10.000129
ORF1ab/nsp89L9FCttTtt11B.30.000831
ORF1ab/nsp89L9FCttTtt11B.390.002331
ORF1ab/nsp89L9FCttTtt11B.400.000364
ORF1ab/nsp89L9FCttTtt11C.37.10.002618
ORF1ab/nsp89L9FCttTtt11P.1.10.000318
ORF1ab/nsp89L9FCttTtt11P.1.140.000048
ORF1ab/nsp89L9FCttTtt11P.1.170.000162
ORF1ab/nsp89L9FCttTtt11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.