CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : Mut = I107V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp8107I107VI4049VnonsynAtcGtc49914991112410-12412

Details of the mutation I107V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp8107I107VAtcGtc49914991All0.000955
ORF1ab/nsp8107I107VAtcGtc16451645AY.50.033968
ORF1ab/nsp8107I107VAtcGtc485485B.1.1.70.000434
ORF1ab/nsp8107I107VAtcGtc402402AY.370.127054
ORF1ab/nsp8107I107VAtcGtc332332B.1.1.40.988095
ORF1ab/nsp8107I107VAtcGtc327327B.1.617.20.001231
ORF1ab/nsp8107I107VAtcGtc209209AY.40.000325
ORF1ab/nsp8107I107VAtcGtc196196B.1.360.028596
ORF1ab/nsp8107I107VAtcGtc8181B.1.20.000713
ORF1ab/nsp8107I107VAtcGtc7070B.1.10.00127
ORF1ab/nsp8107I107VAtcGtc6868AY.5.30.022942
ORF1ab/nsp8107I107VAtcGtc6464B.10.000586
ORF1ab/nsp8107I107VAtcGtc6161AY.390.001507
ORF1ab/nsp8107I107VAtcGtc5353AY.440.000323
ORF1ab/nsp8107I107VAtcGtc5050P.10.000788
ORF1ab/nsp8107I107VAtcGtc4949AY.430.000217
ORF1ab/nsp8107I107VAtcGtc4747B.1.4290.001106
ORF1ab/nsp8107I107VAtcGtc4343AZ.50.150877
ORF1ab/nsp8107I107VAtcGtc3939AY.1030.000242
ORF1ab/nsp8107I107VAtcGtc3939AY.250.000235
ORF1ab/nsp8107I107VAtcGtc3030B.1.1.5190.001191
ORF1ab/nsp8107I107VAtcGtc2626AY.160.009871
ORF1ab/nsp8107I107VAtcGtc2525B.1.1770.000329
ORF1ab/nsp8107I107VAtcGtc2222AY.30.000219
ORF1ab/nsp8107I107VAtcGtc2222P.1.140.001052
ORF1ab/nsp8107I107VAtcGtc2121C.160.022269
ORF1ab/nsp8107I107VAtcGtc2020C.370.002321
ORF1ab/nsp8107I107VAtcGtc1818AY.450.00219
ORF1ab/nsp8107I107VAtcGtc1717B.1.2580.001131
ORF1ab/nsp8107I107VAtcGtc1313B.1.2210.000923
ORF1ab/nsp8107I107VAtcGtc1212B.1.1.3700.151899
ORF1ab/nsp8107I107VAtcGtc1212B.1.5260.000282
ORF1ab/nsp8107I107VAtcGtc1111AY.9.10.000921
ORF1ab/nsp8107I107VAtcGtc1010AD.20.00219
ORF1ab/nsp8107I107VAtcGtc1010AY.4.20.000217
ORF1ab/nsp8107I107VAtcGtc1010AY.99.20.000922
ORF1ab/nsp8107I107VAtcGtc1010B.1.36.290.005173
ORF1ab/nsp8107I107VAtcGtc1010P.20.001866
ORF1ab/nsp8107I107VAtcGtc1010Q.40.004548
ORF1ab/nsp8107I107VAtcGtc99AY.290.000142
ORF1ab/nsp8107I107VAtcGtc99AY.320.004792
ORF1ab/nsp8107I107VAtcGtc99B.1.1.1890.013616
ORF1ab/nsp8107I107VAtcGtc99B.1.36.80.009
ORF1ab/nsp8107I107VAtcGtc88B.1.1.2630.012461
ORF1ab/nsp8107I107VAtcGtc77A0.002709
ORF1ab/nsp8107I107VAtcGtc77AY.610.000733
ORF1ab/nsp8107I107VAtcGtc77B.1.3150.042424
ORF1ab/nsp8107I107VAtcGtc77B.1.36.220.008454
ORF1ab/nsp8107I107VAtcGtc77C.380.056452
ORF1ab/nsp8107I107VAtcGtc66A.20.003971
ORF1ab/nsp8107I107VAtcGtc66AY.1020.000159
ORF1ab/nsp8107I107VAtcGtc66AY.1200.000223
ORF1ab/nsp8107I107VAtcGtc66AY.270.000388
ORF1ab/nsp8107I107VAtcGtc66AY.350.001398
ORF1ab/nsp8107I107VAtcGtc66AY.470.000187
ORF1ab/nsp8107I107VAtcGtc66B.1.5950.001566
ORF1ab/nsp8107I107VAtcGtc55AY.120.00158
ORF1ab/nsp8107I107VAtcGtc55AY.420.000201
ORF1ab/nsp8107I107VAtcGtc55AY.46.40.000823
ORF1ab/nsp8107I107VAtcGtc55AY.750.00028
ORF1ab/nsp8107I107VAtcGtc55B.1.1.3180.001509
ORF1ab/nsp8107I107VAtcGtc55B.1.1.3690.002231
ORF1ab/nsp8107I107VAtcGtc55B.1.2400.001078
ORF1ab/nsp8107I107VAtcGtc55B.1.3510.000149
ORF1ab/nsp8107I107VAtcGtc55C.300.008636
ORF1ab/nsp8107I107VAtcGtc55C.36.10.020747
ORF1ab/nsp8107I107VAtcGtc55P.1.100.001347
ORF1ab/nsp8107I107VAtcGtc44AY.1000.000184
ORF1ab/nsp8107I107VAtcGtc44AY.1180.000251
ORF1ab/nsp8107I107VAtcGtc44AY.200.000155
ORF1ab/nsp8107I107VAtcGtc44AY.240.001724
ORF1ab/nsp8107I107VAtcGtc44AY.3.10.000341
ORF1ab/nsp8107I107VAtcGtc44AY.330.000267
ORF1ab/nsp8107I107VAtcGtc44AY.340.000388
ORF1ab/nsp8107I107VAtcGtc44AY.510.003636
ORF1ab/nsp8107I107VAtcGtc44AY.75.10.000721
ORF1ab/nsp8107I107VAtcGtc44AY.98.10.000194
ORF1ab/nsp8107I107VAtcGtc44B.1.1.3060.001754
ORF1ab/nsp8107I107VAtcGtc44B.1.1.4160.00362
ORF1ab/nsp8107I107VAtcGtc44B.1.177.440.002076
ORF1ab/nsp8107I107VAtcGtc44B.1.2430.000278
ORF1ab/nsp8107I107VAtcGtc44B.1.429.10.048193
ORF1ab/nsp8107I107VAtcGtc44B.1.5960.000349
ORF1ab/nsp8107I107VAtcGtc44D.20.0003
ORF1ab/nsp8107I107VAtcGtc44P.1.150.000929
ORF1ab/nsp8107I107VAtcGtc44Q.80.00066
ORF1ab/nsp8107I107VAtcGtc33AY.1170.000254
ORF1ab/nsp8107I107VAtcGtc33AY.1190.000106
ORF1ab/nsp8107I107VAtcGtc33AY.230.000209
ORF1ab/nsp8107I107VAtcGtc33AY.260.000085
ORF1ab/nsp8107I107VAtcGtc33AY.46.50.000595
ORF1ab/nsp8107I107VAtcGtc33AY.60.000123
ORF1ab/nsp8107I107VAtcGtc33AY.640.001786
ORF1ab/nsp8107I107VAtcGtc33AY.910.002191
ORF1ab/nsp8107I107VAtcGtc33B.1.1.2840.000322
ORF1ab/nsp8107I107VAtcGtc33B.1.1.4200.003018
ORF1ab/nsp8107I107VAtcGtc33B.1.1.4340.001046
ORF1ab/nsp8107I107VAtcGtc33B.1.177.420.002683
ORF1ab/nsp8107I107VAtcGtc33B.1.5500.041096
ORF1ab/nsp8107I107VAtcGtc33B.1.6180.012097
ORF1ab/nsp8107I107VAtcGtc33C.360.002732
ORF1ab/nsp8107I107VAtcGtc33P.1.70.000958
ORF1ab/nsp8107I107VAtcGtc33R.10.00027
ORF1ab/nsp8107I107VAtcGtc22A.2.40.006734
ORF1ab/nsp8107I107VAtcGtc22A.210.00554
ORF1ab/nsp8107I107VAtcGtc22AY.1130.000285
ORF1ab/nsp8107I107VAtcGtc22AY.16.10.00094
ORF1ab/nsp8107I107VAtcGtc22AY.300.000791
ORF1ab/nsp8107I107VAtcGtc22AY.460.000208
ORF1ab/nsp8107I107VAtcGtc22AY.5.40.000553
ORF1ab/nsp8107I107VAtcGtc22AY.840.000875
ORF1ab/nsp8107I107VAtcGtc22AY.870.001665
ORF1ab/nsp8107I107VAtcGtc22AY.880.001768
ORF1ab/nsp8107I107VAtcGtc22B0.000256
ORF1ab/nsp8107I107VAtcGtc22B.1.1.3010.002358
ORF1ab/nsp8107I107VAtcGtc22B.1.1.3170.000823
ORF1ab/nsp8107I107VAtcGtc22B.1.1.370.000386
ORF1ab/nsp8107I107VAtcGtc22B.1.2060.001631
ORF1ab/nsp8107I107VAtcGtc22B.1.3110.000549
ORF1ab/nsp8107I107VAtcGtc22B.1.3200.002491
ORF1ab/nsp8107I107VAtcGtc22B.1.3320.006993
ORF1ab/nsp8107I107VAtcGtc22B.1.3620.003082
ORF1ab/nsp8107I107VAtcGtc22B.1.5250.000226
ORF1ab/nsp8107I107VAtcGtc22B.1.5800.00813
ORF1ab/nsp8107I107VAtcGtc22B.1.617.30.00597
ORF1ab/nsp8107I107VAtcGtc22B.1.6370.000146
ORF1ab/nsp8107I107VAtcGtc22P.1.120.000968
ORF1ab/nsp8107I107VAtcGtc22Q.10.000253
ORF1ab/nsp8107I107VAtcGtc11A.10.000282
ORF1ab/nsp8107I107VAtcGtc11A.2.50.000499
ORF1ab/nsp8107I107VAtcGtc11A.23.10.000704
ORF1ab/nsp8107I107VAtcGtc11A.30.002096
ORF1ab/nsp8107I107VAtcGtc11AY.190.00114
ORF1ab/nsp8107I107VAtcGtc11AY.34.10.00051
ORF1ab/nsp8107I107VAtcGtc11AY.360.000148
ORF1ab/nsp8107I107VAtcGtc11AY.39.10.00004
ORF1ab/nsp8107I107VAtcGtc11AY.39.20.001541
ORF1ab/nsp8107I107VAtcGtc11AY.4.2.10.000149
ORF1ab/nsp8107I107VAtcGtc11AY.4.30.000842
ORF1ab/nsp8107I107VAtcGtc11AY.400.000964
ORF1ab/nsp8107I107VAtcGtc11AY.46.30.000934
ORF1ab/nsp8107I107VAtcGtc11AY.540.000095
ORF1ab/nsp8107I107VAtcGtc11AY.560.001605
ORF1ab/nsp8107I107VAtcGtc11AY.580.000907
ORF1ab/nsp8107I107VAtcGtc11AY.600.000938
ORF1ab/nsp8107I107VAtcGtc11AY.620.000436
ORF1ab/nsp8107I107VAtcGtc11AY.690.000187
ORF1ab/nsp8107I107VAtcGtc11AY.70.000196
ORF1ab/nsp8107I107VAtcGtc11B.1.1.1170.009709
ORF1ab/nsp8107I107VAtcGtc11B.1.1.1610.003534
ORF1ab/nsp8107I107VAtcGtc11B.1.1.2140.000055
ORF1ab/nsp8107I107VAtcGtc11B.1.1.2220.000204
ORF1ab/nsp8107I107VAtcGtc11B.1.1.280.000311
ORF1ab/nsp8107I107VAtcGtc11B.1.1.2910.000742
ORF1ab/nsp8107I107VAtcGtc11B.1.1.2940.001266
ORF1ab/nsp8107I107VAtcGtc11B.1.1.3070.002532
ORF1ab/nsp8107I107VAtcGtc11B.1.1.3480.000796
ORF1ab/nsp8107I107VAtcGtc11B.1.1.4090.002833
ORF1ab/nsp8107I107VAtcGtc11B.1.1.4370.010417
ORF1ab/nsp8107I107VAtcGtc11B.1.1.500.000679
ORF1ab/nsp8107I107VAtcGtc11B.1.1.5180.006329
ORF1ab/nsp8107I107VAtcGtc11B.1.1.520.012195
ORF1ab/nsp8107I107VAtcGtc11B.1.1390.000733
ORF1ab/nsp8107I107VAtcGtc11B.1.1600.000031
ORF1ab/nsp8107I107VAtcGtc11B.1.177.100.000878
ORF1ab/nsp8107I107VAtcGtc11B.1.177.210.000076
ORF1ab/nsp8107I107VAtcGtc11B.1.177.450.000381
ORF1ab/nsp8107I107VAtcGtc11B.1.177.520.001757
ORF1ab/nsp8107I107VAtcGtc11B.1.177.630.002703
ORF1ab/nsp8107I107VAtcGtc11B.1.177.730.000566
ORF1ab/nsp8107I107VAtcGtc11B.1.177.80.000752
ORF1ab/nsp8107I107VAtcGtc11B.1.258.110.000396
ORF1ab/nsp8107I107VAtcGtc11B.1.258.170.000104
ORF1ab/nsp8107I107VAtcGtc11B.1.3190.003049
ORF1ab/nsp8107I107VAtcGtc11B.1.351.20.000303
ORF1ab/nsp8107I107VAtcGtc11B.1.36.100.004785
ORF1ab/nsp8107I107VAtcGtc11B.1.36.160.001425
ORF1ab/nsp8107I107VAtcGtc11B.1.3960.000706
ORF1ab/nsp8107I107VAtcGtc11B.1.4000.000429
ORF1ab/nsp8107I107VAtcGtc11B.1.4270.00005
ORF1ab/nsp8107I107VAtcGtc11B.1.4560.003268
ORF1ab/nsp8107I107VAtcGtc11B.1.5090.000866
ORF1ab/nsp8107I107VAtcGtc11B.1.5160.001957
ORF1ab/nsp8107I107VAtcGtc11B.1.5240.001406
ORF1ab/nsp8107I107VAtcGtc11B.1.5640.000426
ORF1ab/nsp8107I107VAtcGtc11B.1.5680.001111
ORF1ab/nsp8107I107VAtcGtc11B.1.5770.000687
ORF1ab/nsp8107I107VAtcGtc11B.1.617.10.000129
ORF1ab/nsp8107I107VAtcGtc11B.470.020408
ORF1ab/nsp8107I107VAtcGtc11C.170.055556
ORF1ab/nsp8107I107VAtcGtc11C.260.007353
ORF1ab/nsp8107I107VAtcGtc11C.350.000774
ORF1ab/nsp8107I107VAtcGtc11C.36.30.000567
ORF1ab/nsp8107I107VAtcGtc11P.1.160.000374
ORF1ab/nsp8107I107VAtcGtc11P.30.001595
ORF1ab/nsp8107I107VAtcGtc11P.50.013699
ORF1ab/nsp8107I107VAtcGtc11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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