CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : Mut = A53V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp853A53VA3995VnonsyngCagTa103010010.97184512248-12250
ORF1ab/nsp853A53VA3995VnonsyngCAgTT1030220.021359212248-12250
ORF1ab/nsp853A53VA3995VnonsyngCAgTG103070.0067961212248-12250

Details of the mutation A53V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp853A53VgCagTa10011030All0.000191
ORF1ab/nsp853A53VgCAgTT221030All0.000004
ORF1ab/nsp853A53VgCAgTG71030All0.000001
ORF1ab/nsp853A53VgCagTa232233AY.40.000361
ORF1ab/nsp853A53VgCAgTG1233AY.40.000002
ORF1ab/nsp853A53VgCagTa202202B.1.1.2940.255696
ORF1ab/nsp853A53VgCagTa190190AY.250.001143
ORF1ab/nsp853A53VgCagTa82107B.1.1.70.000073
ORF1ab/nsp853A53VgCAgTT20107B.1.1.70.000018
ORF1ab/nsp853A53VgCAgTG5107B.1.1.70.000004
ORF1ab/nsp853A53VgCagTa2626B.1.20.000229
ORF1ab/nsp853A53VgCagTa1920B.1.10.000345
ORF1ab/nsp853A53VgCAgTT120B.1.10.000018
ORF1ab/nsp853A53VgCagTa2020B.1.617.20.000075
ORF1ab/nsp853A53VgCagTa1515B.40.033113
ORF1ab/nsp853A53VgCagTa1313M.31
ORF1ab/nsp853A53VgCagTa1111B.1.1.3180.003319
ORF1ab/nsp853A53VgCagTa1010AY.100.005299
ORF1ab/nsp853A53VgCagTa1010B.10.000092
ORF1ab/nsp853A53VgCagTa88AY.440.000049
ORF1ab/nsp853A53VgCagTa77AY.1030.000043
ORF1ab/nsp853A53VgCagTa66AY.260.00017
ORF1ab/nsp853A53VgCagTa66AY.470.000187
ORF1ab/nsp853A53VgCagTa66B.1.1100.027149
ORF1ab/nsp853A53VgCagTa66B.1.6210.000531
ORF1ab/nsp853A53VgCagTa66M.20.5
ORF1ab/nsp853A53VgCagTa55AY.1000.00023
ORF1ab/nsp853A53VgCagTa55B.1.4270.000252
ORF1ab/nsp853A53VgCagTa44AY.1020.000106
ORF1ab/nsp853A53VgCagTa44AY.390.000099
ORF1ab/nsp853A53VgCagTa44AY.430.000018
ORF1ab/nsp853A53VgCagTa44B.1.3690.001141
ORF1ab/nsp853A53VgCagTa24P.10.000032
ORF1ab/nsp853A53VgCAgTG14P.10.000016
ORF1ab/nsp853A53VgCAgTT14P.10.000016
ORF1ab/nsp853A53VgCagTa33AY.4.20.000065
ORF1ab/nsp853A53VgCagTa33AY.460.000312
ORF1ab/nsp853A53VgCagTa33AY.540.000286
ORF1ab/nsp853A53VgCagTa33AY.940.001328
ORF1ab/nsp853A53VgCagTa33B.1.1.3110.001074
ORF1ab/nsp853A53VgCagTa33B.1.2210.000213
ORF1ab/nsp853A53VgCagTa33B.1.2580.0002
ORF1ab/nsp853A53VgCagTa33B.1.3510.000089
ORF1ab/nsp853A53VgCagTa33B.1.4660.069767
ORF1ab/nsp853A53VgCagTa33C.10.007177
ORF1ab/nsp853A53VgCagTa33C.36.30.001702
ORF1ab/nsp853A53VgCagTa33P.1.40.00293
ORF1ab/nsp853A53VgCagTa22AD.20.000438
ORF1ab/nsp853A53VgCagTa22AY.1190.000071
ORF1ab/nsp853A53VgCagTa22AY.200.000078
ORF1ab/nsp853A53VgCagTa22AY.850.000854
ORF1ab/nsp853A53VgCagTa22B.1.1.2220.000408
ORF1ab/nsp853A53VgCagTa22B.1.1.3480.001592
ORF1ab/nsp853A53VgCagTa22B.1.177.730.001133
ORF1ab/nsp853A53VgCagTa22B.1.2340.000264
ORF1ab/nsp853A53VgCagTa22B.1.3490.00143
ORF1ab/nsp853A53VgCagTa22B.1.4290.000047
ORF1ab/nsp853A53VgCagTa22B.1.4450.023529
ORF1ab/nsp853A53VgCagTa22B.1.5260.000047
ORF1ab/nsp853A53VgCagTa22B.1.6370.000146
ORF1ab/nsp853A53VgCagTa22Q.80.00033
ORF1ab/nsp853A53VgCagTa11AT.10.005128
ORF1ab/nsp853A53VgCagTa11AY.1180.000063
ORF1ab/nsp853A53VgCagTa11AY.120.20.001285
ORF1ab/nsp853A53VgCagTa11AY.230.00007
ORF1ab/nsp853A53VgCagTa11AY.290.000016
ORF1ab/nsp853A53VgCagTa11AY.320.000532
ORF1ab/nsp853A53VgCagTa11AY.34.10.00051
ORF1ab/nsp853A53VgCagTa11AY.39.10.00004
ORF1ab/nsp853A53VgCagTa11AY.450.000122
ORF1ab/nsp853A53VgCagTa11AY.50.000021
ORF1ab/nsp853A53VgCagTa11AY.60.000041
ORF1ab/nsp853A53VgCagTa11AY.610.000105
ORF1ab/nsp853A53VgCagTa11AY.750.000056
ORF1ab/nsp853A53VgCagTa11AY.930.000273
ORF1ab/nsp853A53VgCagTa11AY.99.20.000092
ORF1ab/nsp853A53VgCagTa11AZ.10.000867
ORF1ab/nsp853A53VgCagTa11B.1.1.10.000327
ORF1ab/nsp853A53VgCagTa11B.1.1.1890.001513
ORF1ab/nsp853A53VgCagTa11B.1.1.330.000421
ORF1ab/nsp853A53VgCagTa11B.1.1050.009615
ORF1ab/nsp853A53VgCagTa11B.1.110.30.000718
ORF1ab/nsp853A53VgCagTa11B.1.1770.000013
ORF1ab/nsp853A53VgCagTa11B.1.3110.000275
ORF1ab/nsp853A53VgCagTa11B.1.360.000146
ORF1ab/nsp853A53VgCagTa11B.1.36.290.000517
ORF1ab/nsp853A53VgCagTa11B.1.3610.001289
ORF1ab/nsp853A53VgCagTa11B.1.5740.002151
ORF1ab/nsp853A53VgCagTa11B.1.617.10.000129
ORF1ab/nsp853A53VgCagTa11B.1.6280.000352
ORF1ab/nsp853A53VgCagTa11C.370.000116
ORF1ab/nsp853A53VgCagTa11D.20.000075
ORF1ab/nsp853A53VgCagTa11P.1.120.000484
ORF1ab/nsp853A53VgCagTa11Q.10.000126
ORF1ab/nsp853A53VgCagTa11Q.30.000145