CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : Mut = A53S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp853A53SA3995SnonsynGcaTca1471300.88435412248-12250
ORF1ab/nsp853A53SA3995SnonsynGCAAGT147120.081632712248-12250
ORF1ab/nsp853A53SA3995SnonsynGcATcT14730.020408212248-12250
ORF1ab/nsp853A53SA3995SnonsynGcATcG14710.0068027212248-12250
ORF1ab/nsp853A53SA3995SnonsynGcATcC14710.0068027212248-12250

Details of the mutation A53S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp853A53SGcaTca130147All0.000025
ORF1ab/nsp853A53SGCAAGT12147All0.000002
ORF1ab/nsp853A53SGcATcT3147All0.000001
ORF1ab/nsp853A53SGcATcC1147All0
ORF1ab/nsp853A53SGcATcG1147All0
ORF1ab/nsp853A53SGcaTca1326B.1.1.70.000012
ORF1ab/nsp853A53SGCAAGT1226B.1.1.70.000011
ORF1ab/nsp853A53SGcATcT126B.1.1.70.000001
ORF1ab/nsp853A53SGcaTca1313AY.40.00002
ORF1ab/nsp853A53SGcaTca1212B.1.617.20.000045
ORF1ab/nsp853A53SGcaTca1010AY.46.60.000722
ORF1ab/nsp853A53SGcaTca1010B.1.20.000088
ORF1ab/nsp853A53SGcaTca1010B.1.5260.000235
ORF1ab/nsp853A53SGcaTca88AY.200.000311
ORF1ab/nsp853A53SGcaTca77B.1.258.140.006863
ORF1ab/nsp853A53SGcaTca66AY.116.10.001869
ORF1ab/nsp853A53SGcaTca66AY.250.000036
ORF1ab/nsp853A53SGcaTca33AY.440.000018
ORF1ab/nsp853A53SGcaTca33B.10.000027
ORF1ab/nsp853A53SGcaTca23B.1.10.000036
ORF1ab/nsp853A53SGcATcT13B.1.10.000018
ORF1ab/nsp853A53SGcaTca13P.10.000016
ORF1ab/nsp853A53SGcATcT13P.10.000016
ORF1ab/nsp853A53SGcATcG13P.10.000016
ORF1ab/nsp853A53SGcaTca22AY.1200.000074
ORF1ab/nsp853A53SGcaTca22AY.390.000049
ORF1ab/nsp853A53SGcaTca22AY.4.20.000043
ORF1ab/nsp853A53SGcaTca22AY.680.000547
ORF1ab/nsp853A53SGcATcC12B.1.3910.001127
ORF1ab/nsp853A53SGcaTca12B.1.3910.001127
ORF1ab/nsp853A53SGcaTca11AW.10.003049
ORF1ab/nsp853A53SGcaTca11AY.10.000396
ORF1ab/nsp853A53SGcaTca11AY.1020.000027
ORF1ab/nsp853A53SGcaTca11AY.1140.000231
ORF1ab/nsp853A53SGcaTca11AY.1160.000287
ORF1ab/nsp853A53SGcaTca11AY.120.20.001285
ORF1ab/nsp853A53SGcaTca11AY.430.000004
ORF1ab/nsp853A53SGcaTca11AY.450.000122
ORF1ab/nsp853A53SGcaTca11AY.50.000021
ORF1ab/nsp853A53SGcaTca11AY.530.000288
ORF1ab/nsp853A53SGcaTca11AY.75.10.00018
ORF1ab/nsp853A53SGcaTca11B.1.1.280.000311
ORF1ab/nsp853A53SGcaTca11B.1.1.370.000193
ORF1ab/nsp853A53SGcaTca11B.1.1040.00369
ORF1ab/nsp853A53SGcaTca11B.1.177.210.000076
ORF1ab/nsp853A53SGcaTca11B.1.2340.000132
ORF1ab/nsp853A53SGcaTca11Z.10.00289