CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : Mut = A1A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp81A1AA3943AsyngcTgcC2772680.96750912092-12094
ORF1ab/nsp81A1AA3943AsyngcTgcG27750.018050512092-12094
ORF1ab/nsp81A1AA3943AsyngcTgcA27740.014440412092-12094

Details of the mutation A1A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp81A1AgcTgcC268277All0.000051
ORF1ab/nsp81A1AgcTgcG5277All0.000001
ORF1ab/nsp81A1AgcTgcA4277All0.000001
ORF1ab/nsp81A1AgcTgcC9191B.1.1.4370.947917
ORF1ab/nsp81A1AgcTgcC2323AY.250.000138
ORF1ab/nsp81A1AgcTgcC2222Q.10.002779
ORF1ab/nsp81A1AgcTgcC2121B.1.1.70.000019
ORF1ab/nsp81A1AgcTgcC1616AY.50.00033
ORF1ab/nsp81A1AgcTgcC1213AY.40.000019
ORF1ab/nsp81A1AgcTgcA113AY.40.000002
ORF1ab/nsp81A1AgcTgcC1112AY.430.000049
ORF1ab/nsp81A1AgcTgcA112AY.430.000004
ORF1ab/nsp81A1AgcTgcC88AY.4.20.000174
ORF1ab/nsp81A1AgcTgcC77AY.46.50.001389
ORF1ab/nsp81A1AgcTgcC77B.10.000064
ORF1ab/nsp81A1AgcTgcC55AY.230.000349
ORF1ab/nsp81A1AgcTgcC55B.1.617.20.000019
ORF1ab/nsp81A1AgcTgcC33B.1.20.000026
ORF1ab/nsp81A1AgcTgcG23B.1.4290.000047
ORF1ab/nsp81A1AgcTgcC13B.1.4290.000024
ORF1ab/nsp81A1AgcTgcC22AY.1020.000053
ORF1ab/nsp81A1AgcTgcG22AY.200.000078
ORF1ab/nsp81A1AgcTgcC22AY.390.000049
ORF1ab/nsp81A1AgcTgcC22B.1.10.000036
ORF1ab/nsp81A1AgcTgcC22V.20.064516
ORF1ab/nsp81A1AgcTgcG110.055556
ORF1ab/nsp81A1AgcTgcA11AY.1030.000006
ORF1ab/nsp81A1AgcTgcC11AY.1100.000113
ORF1ab/nsp81A1AgcTgcC11AY.1190.000035
ORF1ab/nsp81A1AgcTgcC11AY.290.000016
ORF1ab/nsp81A1AgcTgcC11AY.360.000148
ORF1ab/nsp81A1AgcTgcC11AY.420.00004
ORF1ab/nsp81A1AgcTgcC11AY.440.000006
ORF1ab/nsp81A1AgcTgcC11AY.650.000533
ORF1ab/nsp81A1AgcTgcC11AY.730.000665
ORF1ab/nsp81A1AgcTgcC11AY.750.000056
ORF1ab/nsp81A1AgcTgcA11AY.990.001049
ORF1ab/nsp81A1AgcTgcC11B0.000128
ORF1ab/nsp81A1AgcTgcC11B.1.1.3110.000358
ORF1ab/nsp81A1AgcTgcC11B.1.1.80.003584
ORF1ab/nsp81A1AgcTgcC11B.1.1770.000013
ORF1ab/nsp81A1AgcTgcC11B.1.2210.000071
ORF1ab/nsp81A1AgcTgcC11B.1.36.70.004
ORF1ab/nsp81A1AgcTgcC11B.1.3690.000285
ORF1ab/nsp81A1AgcTgcC11B.1.3710.001122
ORF1ab/nsp81A1AgcTgcC11B.1.4530.003236
ORF1ab/nsp81A1AgcTgcC11B.1.5960.000087
ORF1ab/nsp81A1AgcTgcC11B.1.6090.000479
ORF1ab/nsp81A1AgcTgcC11B.1.617.10.000129
ORF1ab/nsp81A1AgcTgcC11B.1.6210.000089
ORF1ab/nsp81A1AgcTgcC11B.1.6370.000073
ORF1ab/nsp81A1AgcTgcC11B.6.60.000889
ORF1ab/nsp81A1AgcTgcC11D.20.000075
ORF1ab/nsp81A1AgcTgcC11N.50.001767
ORF1ab/nsp81A1AgcTgcC11P.10.000016
ORF1ab/nsp81A1AgcTgcC11P.20.000187