CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : Mut = A13A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp813A13AA3955AsyngcAgcG6755590.82814812128-12130
ORF1ab/nsp813A13AA3955AsyngcAgcT675870.12888912128-12130
ORF1ab/nsp813A13AA3955AsyngcAgcC675290.04296312128-12130

Details of the mutation A13A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp813A13AgcAgcG559675All0.000107
ORF1ab/nsp813A13AgcAgcT87675All0.000017
ORF1ab/nsp813A13AgcAgcC29675All0.000006
ORF1ab/nsp813A13AgcAgcG155155AY.330.010351
ORF1ab/nsp813A13AgcAgcG107114B.1.1.70.000096
ORF1ab/nsp813A13AgcAgcT6114B.1.1.70.000005
ORF1ab/nsp813A13AgcAgcC1114B.1.1.70.000001
ORF1ab/nsp813A13AgcAgcG5970AY.440.000359
ORF1ab/nsp813A13AgcAgcT1170AY.440.000067
ORF1ab/nsp813A13AgcAgcG4646B.1.4600.821429
ORF1ab/nsp813A13AgcAgcG3333B.1.20.000291
ORF1ab/nsp813A13AgcAgcG1530B.1.617.20.000056
ORF1ab/nsp813A13AgcAgcT1530B.1.617.20.000056
ORF1ab/nsp813A13AgcAgcG2329AY.40.000036
ORF1ab/nsp813A13AgcAgcT329AY.40.000005
ORF1ab/nsp813A13AgcAgcC329AY.40.000005
ORF1ab/nsp813A13AgcAgcC1620B.1.360.002334
ORF1ab/nsp813A13AgcAgcG420B.1.360.000584
ORF1ab/nsp813A13AgcAgcG1719AY.30.000169
ORF1ab/nsp813A13AgcAgcC219AY.30.00002
ORF1ab/nsp813A13AgcAgcT1013AY.1020.000265
ORF1ab/nsp813A13AgcAgcG313AY.1020.00008
ORF1ab/nsp813A13AgcAgcT1010AY.1190.000353
ORF1ab/nsp813A13AgcAgcG99AY.250.000054
ORF1ab/nsp813A13AgcAgcG79B.10.000064
ORF1ab/nsp813A13AgcAgcC19B.10.000009
ORF1ab/nsp813A13AgcAgcT19B.10.000009
ORF1ab/nsp813A13AgcAgcT58AY.430.000022
ORF1ab/nsp813A13AgcAgcG38AY.430.000013
ORF1ab/nsp813A13AgcAgcT66AY.1110.001099
ORF1ab/nsp813A13AgcAgcG66AY.420.000241
ORF1ab/nsp813A13AgcAgcG55AY.200.000194
ORF1ab/nsp813A13AgcAgcG34AY.1030.000019
ORF1ab/nsp813A13AgcAgcT14AY.1030.000006
ORF1ab/nsp813A13AgcAgcG44AY.98.10.000194
ORF1ab/nsp813A13AgcAgcG34B.1.5260.000071
ORF1ab/nsp813A13AgcAgcT14B.1.5260.000024
ORF1ab/nsp813A13AgcAgcG44B.1.5750.001214
ORF1ab/nsp813A13AgcAgcC330.166667
ORF1ab/nsp813A13AgcAgcT33AY.460.000312
ORF1ab/nsp813A13AgcAgcG33AY.740.000347
ORF1ab/nsp813A13AgcAgcG33B.1.1.2220.000612
ORF1ab/nsp813A13AgcAgcG33B.1.1600.000094
ORF1ab/nsp813A13AgcAgcG33B.1.466.20.001174
ORF1ab/nsp813A13AgcAgcG33B.40.006623
ORF1ab/nsp813A13AgcAgcG33P.1.100.000808
ORF1ab/nsp813A13AgcAgcG22AY.1000.000092
ORF1ab/nsp813A13AgcAgcT22AY.230.000139
ORF1ab/nsp813A13AgcAgcG22B.1.10.000036
ORF1ab/nsp813A13AgcAgcT22B.1.1.3180.000604
ORF1ab/nsp813A13AgcAgcG22B.1.177.60.001953
ORF1ab/nsp813A13AgcAgcC22B.1.2210.000142
ORF1ab/nsp813A13AgcAgcG22B.1.3110.000549
ORF1ab/nsp813A13AgcAgcT22B.1.351.30.001753
ORF1ab/nsp813A13AgcAgcT22P.1.170.000324
ORF1ab/nsp813A13AgcAgcG11AD.20.000219
ORF1ab/nsp813A13AgcAgcG11AY.1070.000466
ORF1ab/nsp813A13AgcAgcG11AY.1130.000142
ORF1ab/nsp813A13AgcAgcG11AY.1180.000063
ORF1ab/nsp813A13AgcAgcG11AY.290.000016
ORF1ab/nsp813A13AgcAgcG11AY.390.000025
ORF1ab/nsp813A13AgcAgcG11AY.46.20.000635
ORF1ab/nsp813A13AgcAgcG11AY.470.000031
ORF1ab/nsp813A13AgcAgcG11AY.540.000095
ORF1ab/nsp813A13AgcAgcG11AY.610.000105
ORF1ab/nsp813A13AgcAgcG11AY.690.000187
ORF1ab/nsp813A13AgcAgcT11AY.790.001211
ORF1ab/nsp813A13AgcAgcT11AY.90.000068
ORF1ab/nsp813A13AgcAgcT11AY.99.20.000092
ORF1ab/nsp813A13AgcAgcT11B.1.1.2160.00089
ORF1ab/nsp813A13AgcAgcG11B.1.1.2770.000759
ORF1ab/nsp813A13AgcAgcG11B.1.1.280.000311
ORF1ab/nsp813A13AgcAgcG11B.1.1.3280.016949
ORF1ab/nsp813A13AgcAgcT11B.1.1260.001276
ORF1ab/nsp813A13AgcAgcG11B.1.1770.000013
ORF1ab/nsp813A13AgcAgcG11B.1.177.160.000664
ORF1ab/nsp813A13AgcAgcG11B.1.177.810.000189
ORF1ab/nsp813A13AgcAgcG11B.1.2580.000067
ORF1ab/nsp813A13AgcAgcG11B.1.36.80.001
ORF1ab/nsp813A13AgcAgcG11B.1.4270.00005
ORF1ab/nsp813A13AgcAgcC11B.1.5250.000113
ORF1ab/nsp813A13AgcAgcG11B.1.5510.00129
ORF1ab/nsp813A13AgcAgcG11B.1.5950.000261
ORF1ab/nsp813A13AgcAgcG11B.1.5960.000087
ORF1ab/nsp813A13AgcAgcG11B.6.80.008264
ORF1ab/nsp813A13AgcAgcT11C.360.000911
ORF1ab/nsp813A13AgcAgcG11D.20.000075
ORF1ab/nsp813A13AgcAgcG11P.10.000016
ORF1ab/nsp813A13AgcAgcT11P.1.150.000232
ORF1ab/nsp813A13AgcAgcG11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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