CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 95 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp895L95FL4037FnonsynCttTtt15421542112374-12376

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp895L95FCttTtt15421542All0.000295
ORF1ab/nsp895L95FCttTtt333333B.1.1.70.000298
ORF1ab/nsp895L95FCttTtt172172B.1.1.5190.00683
ORF1ab/nsp895L95FCttTtt132132B.1.5891
ORF1ab/nsp895L95FCttTtt111111AY.40.000173
ORF1ab/nsp895L95FCttTtt9696B.1.4230.979592
ORF1ab/nsp895L95FCttTtt5757B.1.617.20.000215
ORF1ab/nsp895L95FCttTtt5050B.10.000458
ORF1ab/nsp895L95FCttTtt4747B.1.10.000853
ORF1ab/nsp895L95FCttTtt4242B.1.1770.000553
ORF1ab/nsp895L95FCttTtt4242B.1.20.00037
ORF1ab/nsp895L95FCttTtt3636AY.46.60.002599
ORF1ab/nsp895L95FCttTtt3232AY.1030.000199
ORF1ab/nsp895L95FCttTtt2424AY.1020.000636
ORF1ab/nsp895L95FCttTtt1818B.1.177.280.133333
ORF1ab/nsp895L95FCttTtt1616B.1.1.4231
ORF1ab/nsp895L95FCttTtt1313AY.430.000058
ORF1ab/nsp895L95FCttTtt1313AY.440.000079
ORF1ab/nsp895L95FCttTtt1313B.1.5260.000306
ORF1ab/nsp895L95FCttTtt99B.1.1.2250.064748
ORF1ab/nsp895L95FCttTtt88AY.290.000126
ORF1ab/nsp895L95FCttTtt77AY.250.000042
ORF1ab/nsp895L95FCttTtt77AY.470.000218
ORF1ab/nsp895L95FCttTtt77B.1.1600.000218
ORF1ab/nsp895L95FCttTtt77B.1.3750.005738
ORF1ab/nsp895L95FCttTtt66B.1.5770.004124
ORF1ab/nsp895L95FCttTtt66B.1.5960.000523
ORF1ab/nsp895L95FCttTtt55AY.1110.000916
ORF1ab/nsp895L95FCttTtt55AY.360.000741
ORF1ab/nsp895L95FCttTtt55B.1.1.4200.00503
ORF1ab/nsp895L95FCttTtt55B.1.2430.000348
ORF1ab/nsp895L95FCttTtt55B.1.4290.000118
ORF1ab/nsp895L95FCttTtt55Q.20.003067
ORF1ab/nsp895L95FCttTtt44AY.1000.000184
ORF1ab/nsp895L95FCttTtt44AY.1170.000338
ORF1ab/nsp895L95FCttTtt44AY.390.000099
ORF1ab/nsp895L95FCttTtt44AY.9.20.000147
ORF1ab/nsp895L95FCttTtt44B.1.1270.008791
ORF1ab/nsp895L95FCttTtt44B.1.258.170.000416
ORF1ab/nsp895L95FCttTtt44B.1.4270.000202
ORF1ab/nsp895L95FCttTtt44D.20.0003
ORF1ab/nsp895L95FCttTtt44P.10.000063
ORF1ab/nsp895L95FCttTtt33AY.200.000117
ORF1ab/nsp895L95FCttTtt33AY.260.000085
ORF1ab/nsp895L95FCttTtt33AY.460.000312
ORF1ab/nsp895L95FCttTtt33AY.50.000062
ORF1ab/nsp895L95FCttTtt33AY.980.000237
ORF1ab/nsp895L95FCttTtt33B.1.1.3010.003538
ORF1ab/nsp895L95FCttTtt33B.1.1.330.001263
ORF1ab/nsp895L95FCttTtt33B.1.130.007126
ORF1ab/nsp895L95FCttTtt33B.1.1950.015075
ORF1ab/nsp895L95FCttTtt33B.1.2210.000213
ORF1ab/nsp895L95FCttTtt33B.1.2340.000396
ORF1ab/nsp895L95FCttTtt33B.1.575.10.007317
ORF1ab/nsp895L95FCttTtt33B.1.6050.017857
ORF1ab/nsp895L95FCttTtt22AY.1200.000074
ORF1ab/nsp895L95FCttTtt22AY.3.10.000171
ORF1ab/nsp895L95FCttTtt22AY.340.000194
ORF1ab/nsp895L95FCttTtt22AY.4.20.000043
ORF1ab/nsp895L95FCttTtt22AY.450.000243
ORF1ab/nsp895L95FCttTtt22AY.750.000112
ORF1ab/nsp895L95FCttTtt22AY.930.000546
ORF1ab/nsp895L95FCttTtt22B.1.1.2220.000408
ORF1ab/nsp895L95FCttTtt22B.1.177.150.001262
ORF1ab/nsp895L95FCttTtt22B.1.177.40.000422
ORF1ab/nsp895L95FCttTtt22B.1.177.430.002954
ORF1ab/nsp895L95FCttTtt22B.1.2320.001075
ORF1ab/nsp895L95FCttTtt22B.1.2400.000431
ORF1ab/nsp895L95FCttTtt22B.1.2580.000133
ORF1ab/nsp895L95FCttTtt22B.1.3510.000059
ORF1ab/nsp895L95FCttTtt22B.1.36.220.002415
ORF1ab/nsp895L95FCttTtt22B.1.36.380.003284
ORF1ab/nsp895L95FCttTtt22B.1.3960.001411
ORF1ab/nsp895L95FCttTtt22B.1.416.10.003125
ORF1ab/nsp895L95FCttTtt22B.1.466.20.000782
ORF1ab/nsp895L95FCttTtt22B.1.5750.000607
ORF1ab/nsp895L95FCttTtt22C.370.000232
ORF1ab/nsp895L95FCttTtt22P.1.140.000096
ORF1ab/nsp895L95FCttTtt22P.1.20.002312
ORF1ab/nsp895L95FCttTtt22P.20.000373
ORF1ab/nsp895L95FCttTtt11A.10.000282
ORF1ab/nsp895L95FCttTtt11A.2.50.000499
ORF1ab/nsp895L95FCttTtt11A.270.001656
ORF1ab/nsp895L95FCttTtt11A.50.001923
ORF1ab/nsp895L95FCttTtt11AU.30.00211
ORF1ab/nsp895L95FCttTtt11AY.1140.000231
ORF1ab/nsp895L95FCttTtt11AY.1190.000035
ORF1ab/nsp895L95FCttTtt11AY.120.20.001285
ORF1ab/nsp895L95FCttTtt11AY.1210.000135
ORF1ab/nsp895L95FCttTtt11AY.130.000161
ORF1ab/nsp895L95FCttTtt11AY.270.000065
ORF1ab/nsp895L95FCttTtt11AY.30.00001
ORF1ab/nsp895L95FCttTtt11AY.330.000067
ORF1ab/nsp895L95FCttTtt11AY.380.000499
ORF1ab/nsp895L95FCttTtt11AY.46.40.000165
ORF1ab/nsp895L95FCttTtt11AY.5.40.000277
ORF1ab/nsp895L95FCttTtt11AY.550.000917
ORF1ab/nsp895L95FCttTtt11AY.690.000187
ORF1ab/nsp895L95FCttTtt11AY.80.000606
ORF1ab/nsp895L95FCttTtt11AY.90.000068
ORF1ab/nsp895L95FCttTtt11AY.98.10.000048
ORF1ab/nsp895L95FCttTtt11B.1.1.1250.010204
ORF1ab/nsp895L95FCttTtt11B.1.1.1530.001095
ORF1ab/nsp895L95FCttTtt11B.1.1.1570.000913
ORF1ab/nsp895L95FCttTtt11B.1.1.2100.005714
ORF1ab/nsp895L95FCttTtt11B.1.1.2160.00089
ORF1ab/nsp895L95FCttTtt11B.1.1.280.000311
ORF1ab/nsp895L95FCttTtt11B.1.1.2840.000107
ORF1ab/nsp895L95FCttTtt11B.1.1.2910.000742
ORF1ab/nsp895L95FCttTtt11B.1.1.3020.002075
ORF1ab/nsp895L95FCttTtt11B.1.1.3170.000412
ORF1ab/nsp895L95FCttTtt11B.1.1.370.000193
ORF1ab/nsp895L95FCttTtt11B.1.1.390.00051
ORF1ab/nsp895L95FCttTtt11B.1.1.3960.045455
ORF1ab/nsp895L95FCttTtt11B.1.1.4330.001425
ORF1ab/nsp895L95FCttTtt11B.1.1.4860.001577
ORF1ab/nsp895L95FCttTtt11B.1.1.510.001718
ORF1ab/nsp895L95FCttTtt11B.1.1.5230.001563
ORF1ab/nsp895L95FCttTtt11B.1.1.700.000341
ORF1ab/nsp895L95FCttTtt11B.1.1390.000733
ORF1ab/nsp895L95FCttTtt11B.1.177.210.000076
ORF1ab/nsp895L95FCttTtt11B.1.177.480.003125
ORF1ab/nsp895L95FCttTtt11B.1.177.560.000668
ORF1ab/nsp895L95FCttTtt11B.1.177.600.000218
ORF1ab/nsp895L95FCttTtt11B.1.177.620.001192
ORF1ab/nsp895L95FCttTtt11B.1.177.690.001484
ORF1ab/nsp895L95FCttTtt11B.1.177.70.000165
ORF1ab/nsp895L95FCttTtt11B.1.177.750.001041
ORF1ab/nsp895L95FCttTtt11B.1.177.810.000189
ORF1ab/nsp895L95FCttTtt11B.1.177.830.001481
ORF1ab/nsp895L95FCttTtt11B.1.258.30.001675
ORF1ab/nsp895L95FCttTtt11B.1.3290.000608
ORF1ab/nsp895L95FCttTtt11B.1.3480.018182
ORF1ab/nsp895L95FCttTtt11B.1.360.000146
ORF1ab/nsp895L95FCttTtt11B.1.36.360.000602
ORF1ab/nsp895L95FCttTtt11B.1.362.20.004717
ORF1ab/nsp895L95FCttTtt11B.1.3690.000285
ORF1ab/nsp895L95FCttTtt11B.1.3710.001122
ORF1ab/nsp895L95FCttTtt11B.1.4080.00369
ORF1ab/nsp895L95FCttTtt11B.1.4530.003236
ORF1ab/nsp895L95FCttTtt11B.1.4590.004082
ORF1ab/nsp895L95FCttTtt11B.1.4600.017857
ORF1ab/nsp895L95FCttTtt11B.1.4690.00361
ORF1ab/nsp895L95FCttTtt11B.1.4700.001404
ORF1ab/nsp895L95FCttTtt11B.1.5170.000427
ORF1ab/nsp895L95FCttTtt11B.1.5250.000113
ORF1ab/nsp895L95FCttTtt11B.1.5610.000397
ORF1ab/nsp895L95FCttTtt11B.1.5760.000907
ORF1ab/nsp895L95FCttTtt11B.1.5820.000491
ORF1ab/nsp895L95FCttTtt11B.1.5880.00091
ORF1ab/nsp895L95FCttTtt11B.1.5950.000261
ORF1ab/nsp895L95FCttTtt11B.1.6090.000479
ORF1ab/nsp895L95FCttTtt11B.1.617.10.000129
ORF1ab/nsp895L95FCttTtt11B.1.6180.004032
ORF1ab/nsp895L95FCttTtt11B.110.005128
ORF1ab/nsp895L95FCttTtt11B.400.000364
ORF1ab/nsp895L95FCttTtt11B.550.00295
ORF1ab/nsp895L95FCttTtt11P.1.100.000269
ORF1ab/nsp895L95FCttTtt11P.1.10.10.00813
ORF1ab/nsp895L95FCttTtt11P.1.150.000232
ORF1ab/nsp895L95FCttTtt11P.1.160.000374
ORF1ab/nsp895L95FCttTtt11P.30.001595
ORF1ab/nsp895L95FCttTtt11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.