CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 93

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp893T93IT4035InonsynaCtaTt997997112368-12370
ORF1ab/nsp893T93AT4035AnonsynActGct253253112368-12370
ORF1ab/nsp893T93TT4035TsynacTacC1701620.95294112368-12370
ORF1ab/nsp893T93TT4035TsynacTacA17050.029411812368-12370
ORF1ab/nsp893T93TT4035TsynacTacG17030.017647112368-12370
ORF1ab/nsp893T93NT4035NnonsynaCtaAt137137112368-12370
ORF1ab/nsp893T93delT4035deldelACT---1111112368-12370
ORF1ab/nsp893T93ST4035SnonsynActTct66112368-12370
ORF1ab/nsp893T93del1T4035del1delAct-ct320.66666712368-12370
ORF1ab/nsp893T93del1T4035del1delacTac-310.33333312368-12370
ORF1ab/nsp893T93YT4035YnonsynACTTAC11112368-12370

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp893T93IaCtaTt997997All0.000191
ORF1ab/nsp893T93IaCtaTt394394AY.5.20.970443
ORF1ab/nsp893T93AActGct253253All0.000048
ORF1ab/nsp893T93AActGct219219B.1.1.1760.096221
ORF1ab/nsp893T93TacTacC162170All0.000031
ORF1ab/nsp893T93TacTacA5170All0.000001
ORF1ab/nsp893T93TacTacG3170All0.000001
ORF1ab/nsp893T93NaCtaAt137137All0.000026
ORF1ab/nsp893T93IaCtaTt120120B.1.1.70.000107
ORF1ab/nsp893T93NaCtaAt104104B.1.1.70.000093
ORF1ab/nsp893T93TacTacC8686AY.290.001357
ORF1ab/nsp893T93IaCtaTt5959AY.40.000092
ORF1ab/nsp893T93IaCtaTt4949B.1.617.20.000185
ORF1ab/nsp893T93IaCtaTt3737B.1.1.10.012088
ORF1ab/nsp893T93IaCtaTt3535AY.30.000348
ORF1ab/nsp893T93IaCtaTt3535B.10.000321
ORF1ab/nsp893T93IaCtaTt1818AY.440.00011
ORF1ab/nsp893T93IaCtaTt1616AY.250.000096
ORF1ab/nsp893T93IaCtaTt1616B.1.20.000141
ORF1ab/nsp893T93TacTacC1515B.1.1.70.000013
ORF1ab/nsp893T93IaCtaTt1515B.1.5960.001307
ORF1ab/nsp893T93TacTacC1414B.1.3510.000416
ORF1ab/nsp893T93IaCtaTt1212AY.1030.000075
ORF1ab/nsp893T93delACT---1111All0.000002
ORF1ab/nsp893T93IaCtaTt1111AY.430.000049
ORF1ab/nsp893T93IaCtaTt1010AY.1000.00046
ORF1ab/nsp893T93IaCtaTt1010AY.200.000389
ORF1ab/nsp893T93NaCtaAt1010AY.40.000016
ORF1ab/nsp893T93IaCtaTt99B.1.1.4340.003137
ORF1ab/nsp893T93IaCtaTt99B.1.5260.000212
ORF1ab/nsp893T93IaCtaTt88B.1.351.20.002421
ORF1ab/nsp893T93TacTacC88B.1.4290.000188
ORF1ab/nsp893T93IaCtaTt77AY.390.000173
ORF1ab/nsp893T93SActTct66All0.000001
ORF1ab/nsp893T93AActGct66AY.1030.000037
ORF1ab/nsp893T93AActGct66AY.30.00006
ORF1ab/nsp893T93AActGct66AY.40.000009
ORF1ab/nsp893T93IaCtaTt66AY.50.000124
ORF1ab/nsp893T93IaCtaTt66B.1.4290.000141
ORF1ab/nsp893T93TacTacC45AY.1030.000025
ORF1ab/nsp893T93TacTacA15AY.1030.000006
ORF1ab/nsp893T93IaCtaTt55AY.1210.000677
ORF1ab/nsp893T93IaCtaTt55AY.290.000079
ORF1ab/nsp893T93TacTacC55AY.4.20.000108
ORF1ab/nsp893T93IaCtaTt55B.1.10.000091
ORF1ab/nsp893T93IaCtaTt55B.1.1.2650.015773
ORF1ab/nsp893T93IaCtaTt55B.1.1.2800.015432
ORF1ab/nsp893T93IaCtaTt55B.1.3510.000149
ORF1ab/nsp893T93IaCtaTt55P.1.140.000239
ORF1ab/nsp893T93IaCtaTt44AY.1130.00057
ORF1ab/nsp893T93IaCtaTt44AY.450.000487
ORF1ab/nsp893T93NaCtaAt44B.1.10.000073
ORF1ab/nsp893T93IaCtaTt44B.1.110.30.002874
ORF1ab/nsp893T93NaCtaAt44B.1.2810.086957
ORF1ab/nsp893T93IaCtaTt44B.1.6210.000354
ORF1ab/nsp893T93del1Act-ct23All0
ORF1ab/nsp893T93del1acTac-13All0
ORF1ab/nsp893T93TacTacC23AY.40.000003
ORF1ab/nsp893T93TacTacG13AY.40.000002
ORF1ab/nsp893T93IaCtaTt33AY.910.002191
ORF1ab/nsp893T93NaCtaAt33B.1.1.3480.002389
ORF1ab/nsp893T93TacTacC33B.1.20.000026
ORF1ab/nsp893T93IaCtaTt33B.1.36.310.005254
ORF1ab/nsp893T93TacTacA33B.1.3910.003382
ORF1ab/nsp893T93SActTct33B.1.5260.000071
ORF1ab/nsp893T93IaCtaTt33P.10.000047
ORF1ab/nsp893T93IaCtaTt33P.1.160.001122
ORF1ab/nsp893T93IaCtaTt22AY.1020.000053
ORF1ab/nsp893T93NaCtaAt22AY.1180.000125
ORF1ab/nsp893T93IaCtaTt22AY.1180.000125
ORF1ab/nsp893T93NaCtaAt22AY.200.000078
ORF1ab/nsp893T93IaCtaTt22AY.230.000139
ORF1ab/nsp893T93delACT---22AY.250.000012
ORF1ab/nsp893T93NaCtaAt22AY.260.000057
ORF1ab/nsp893T93TacTacC22AY.330.000134
ORF1ab/nsp893T93IaCtaTt22AY.420.00008
ORF1ab/nsp893T93TacTacC22AY.430.000009
ORF1ab/nsp893T93AActGct22B.1.1.2140.000111
ORF1ab/nsp893T93IaCtaTt22B.1.1470.001512
ORF1ab/nsp893T93TacTacC22B.1.1600.000062
ORF1ab/nsp893T93IaCtaTt22B.1.1770.000026
ORF1ab/nsp893T93IaCtaTt22B.1.2400.000431
ORF1ab/nsp893T93IaCtaTt22B.1.360.000292
ORF1ab/nsp893T93IaCtaTt22B.1.3620.003082
ORF1ab/nsp893T93AActGct22B.1.4290.000047
ORF1ab/nsp893T93TacTacC22B.1.617.20.000008
ORF1ab/nsp893T93IaCtaTt22B.1.6280.000705
ORF1ab/nsp893T93IaCtaTt22B.1.6370.000146
ORF1ab/nsp893T93TacTacG12B.1.6370.000073
ORF1ab/nsp893T93TacTacC12B.1.6370.000073
ORF1ab/nsp893T93TacTacC22D.20.00015
ORF1ab/nsp893T93YACTTAC11All0
ORF1ab/nsp893T93IaCtaTt11AY.1010.00049
ORF1ab/nsp893T93IaCtaTt11AY.1100.000113
ORF1ab/nsp893T93TacTacG11AY.1190.000035
ORF1ab/nsp893T93IaCtaTt11AY.1190.000035
ORF1ab/nsp893T93IaCtaTt11AY.1200.000037
ORF1ab/nsp893T93delACT---11AY.1200.000037
ORF1ab/nsp893T93TacTacC11AY.120.10.000321
ORF1ab/nsp893T93TacTacC11AY.1210.000135
ORF1ab/nsp893T93TacTacC11AY.130.000161
ORF1ab/nsp893T93IaCtaTt11AY.160.00038
ORF1ab/nsp893T93AActGct11AY.200.000039
ORF1ab/nsp893T93SActTct11AY.230.00007
ORF1ab/nsp893T93NaCtaAt11AY.290.000016
ORF1ab/nsp893T93TacTacC11AY.29.10.000221
ORF1ab/nsp893T93TacTacC11AY.30.00001
ORF1ab/nsp893T93IaCtaTt11AY.330.000067
ORF1ab/nsp893T93AActGct11AY.360.000148
ORF1ab/nsp893T93AActGct11AY.390.000025
ORF1ab/nsp893T93IaCtaTt11AY.39.10.00004
ORF1ab/nsp893T93IaCtaTt11AY.4.50.000107
ORF1ab/nsp893T93TacTacC11AY.420.00004
ORF1ab/nsp893T93delACT---11AY.440.000006
ORF1ab/nsp893T93TacTacC11AY.440.000006
ORF1ab/nsp893T93IaCtaTt11AY.46.60.000072
ORF1ab/nsp893T93NaCtaAt11AY.470.000031
ORF1ab/nsp893T93TacTacC11AY.50.000021
ORF1ab/nsp893T93IaCtaTt11AY.5.30.000337
ORF1ab/nsp893T93IaCtaTt11AY.5.40.000277
ORF1ab/nsp893T93delACT---11AY.80.000606
ORF1ab/nsp893T93AActGct11AY.840.000437
ORF1ab/nsp893T93IaCtaTt11AY.98.10.000048
ORF1ab/nsp893T93IaCtaTt11AY.990.001049
ORF1ab/nsp893T93NaCtaAt11B.10.000009
ORF1ab/nsp893T93SActTct11B.10.000009
ORF1ab/nsp893T93delACT---11B.1.10.000018
ORF1ab/nsp893T93IaCtaTt11B.1.1.1230.017857
ORF1ab/nsp893T93IaCtaTt11B.1.1.1860.003436
ORF1ab/nsp893T93IaCtaTt11B.1.1.2160.00089
ORF1ab/nsp893T93IaCtaTt11B.1.1.2220.000204
ORF1ab/nsp893T93IaCtaTt11B.1.1.3170.000412
ORF1ab/nsp893T93AActGct11B.1.1.3180.000302
ORF1ab/nsp893T93IaCtaTt11B.1.1.3480.000796
ORF1ab/nsp893T93IaCtaTt11B.1.1.4320.001266
ORF1ab/nsp893T93del1Act-ct11B.1.1.4330.001425
ORF1ab/nsp893T93AActGct11B.1.1.70.000001
ORF1ab/nsp893T93delACT---11B.1.1.70.000001
ORF1ab/nsp893T93TacTacC11B.1.1770.000013
ORF1ab/nsp893T93delACT---11B.1.1770.000013
ORF1ab/nsp893T93AActGct11B.1.177.440.000519
ORF1ab/nsp893T93IaCtaTt11B.1.177.820.000477
ORF1ab/nsp893T93SActTct11B.1.177.860.000183
ORF1ab/nsp893T93delACT---11B.1.20.000009
ORF1ab/nsp893T93TacTacC11B.1.2210.000071
ORF1ab/nsp893T93del1acTac-11B.1.3690.000285
ORF1ab/nsp893T93IaCtaTt11B.1.4270.00005
ORF1ab/nsp893T93IaCtaTt11B.1.5050.004386
ORF1ab/nsp893T93TacTacC11B.1.5090.000866
ORF1ab/nsp893T93AActGct11B.1.5260.000024
ORF1ab/nsp893T93IaCtaTt11B.1.5410.004425
ORF1ab/nsp893T93TacTacC11B.1.5540.004405
ORF1ab/nsp893T93AActGct11B.1.617.20.000004
ORF1ab/nsp893T93delACT---11B.1.617.20.000004
ORF1ab/nsp893T93NaCtaAt11B.1.617.20.000004
ORF1ab/nsp893T93YACTTAC11B.1.617.20.000004
ORF1ab/nsp893T93NaCtaAt11B.1.6230.000536
ORF1ab/nsp893T93TacTacC11B.1.6280.000352
ORF1ab/nsp893T93NaCtaAt11B.290.003509
ORF1ab/nsp893T93AActGct11B.30.000831
ORF1ab/nsp893T93del1Act-ct11B.340.013699
ORF1ab/nsp893T93AActGct11B.60.00091
ORF1ab/nsp893T93IaCtaTt11B.60.00091
ORF1ab/nsp893T93IaCtaTt11C.160.00106
ORF1ab/nsp893T93delACT---11N.40.004255
ORF1ab/nsp893T93TacTacC11P.10.000016
ORF1ab/nsp893T93TacTacA11P.1.170.000162
ORF1ab/nsp893T93IaCtaTt11P.1.170.000162
ORF1ab/nsp893T93AActGct11P.20.000187
ORF1ab/nsp893T93IaCtaTt11Q.10.000126
ORF1ab/nsp893T93IaCtaTt11Q.40.000455
ORF1ab/nsp893T93IaCtaTt11Q.80.000165