CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 74 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp874A74VA4016VnonsyngCtgTt386538620.99922412311-12313

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp874A74VgCtgTt38623865All0.000739
ORF1ab/nsp874A74VgCtgTt16191619B.1.214.20.970624
ORF1ab/nsp874A74VgCtgTt302302B.1.1.70.00027
ORF1ab/nsp874A74VgCtgTt291291B.1.5260.00684
ORF1ab/nsp874A74VgCtgTt287289B.1.360.041873
ORF1ab/nsp874A74VgCtgTt174174B.1.4290.004094
ORF1ab/nsp874A74VgCtgTt136136B.1.214.30.971429
ORF1ab/nsp874A74VgCtgTt111111B.1.2400.023928
ORF1ab/nsp874A74VgCtgTt109109B.1.214.40.990909
ORF1ab/nsp874A74VgCtgTt106106B.10.000971
ORF1ab/nsp874A74VgCtgTt9090B.1.2140.32967
ORF1ab/nsp874A74VgCtgTt6666B.1.4800.164179
ORF1ab/nsp874A74VgCtgTt6262B.1.20.000546
ORF1ab/nsp874A74VgCtgTt5555B.1.1.2310.170279
ORF1ab/nsp874A74VgCtgTt4848B.1.214.10.96
ORF1ab/nsp874A74VgCtgTt3232B.1.10.000581
ORF1ab/nsp874A74VgCtgTt2828P.10.000441
ORF1ab/nsp874A74VgCtgTt1717AY.1190.0006
ORF1ab/nsp874A74VgCtgTt1515AY.40.000023
ORF1ab/nsp874A74VgCtgTt1414B.1.2100.029851
ORF1ab/nsp874A74VgCtgTt1313B.1.1.630.005015
ORF1ab/nsp874A74VgCtgTt1010B.1.5750.003034
ORF1ab/nsp874A74VgCtgTt1010B.1.617.20.000038
ORF1ab/nsp874A74VgCtgTt1010B.1.6210.000885
ORF1ab/nsp874A74VgCtgTt99B.1.1.2010.219512
ORF1ab/nsp874A74VgCtgTt99B.1.1.5190.000357
ORF1ab/nsp874A74VgCtgTt88AY.430.000035
ORF1ab/nsp874A74VgCtgTt88B.1.6360.053691
ORF1ab/nsp874A74VgCtgTt88C.36.30.004538
ORF1ab/nsp874A74VgCtgTt77AY.440.000043
ORF1ab/nsp874A74VgCtgTt77AY.50.000145
ORF1ab/nsp874A74VgCtgTt77B.1.2580.000466
ORF1ab/nsp874A74VgCtgTt66B.1.2210.000426
ORF1ab/nsp874A74VgCtgTt66B.1.2340.000792
ORF1ab/nsp874A74VgCtgTt55B.1.1770.000066
ORF1ab/nsp874A74VgCtgTt55B.1.2430.000348
ORF1ab/nsp874A74VgCtgTt55B.1.36.160.007123
ORF1ab/nsp874A74VgCtgTt55B.1.3980.014881
ORF1ab/nsp874A74VgCtgTt55B.1.4380.03268
ORF1ab/nsp874A74VgCtgTt44AY.880.003537
ORF1ab/nsp874A74VgCtgTt44B.1.1600.000125
ORF1ab/nsp874A74VgCtgTt44B.1.2410.003247
ORF1ab/nsp874A74VgCtgTt44B.1.36.350.010417
ORF1ab/nsp874A74VgCtgTt44B.1.5960.000349
ORF1ab/nsp874A74VgCtgTt33A0.001161
ORF1ab/nsp874A74VgCtgTt33AY.1030.000019
ORF1ab/nsp874A74VgCtgTt33AY.16.10.00141
ORF1ab/nsp874A74VgCtgTt33AY.390.000074
ORF1ab/nsp874A74VgCtgTt33B.1.1.2840.000322
ORF1ab/nsp874A74VgCtgTt33B.1.2390.003663
ORF1ab/nsp874A74VgCtgTt33B.1.3510.000089
ORF1ab/nsp874A74VgCtgTt33B.1.36.220.003623
ORF1ab/nsp874A74VgCtgTt33B.1.36.80.003
ORF1ab/nsp874A74VgCtgTt33B.1.4330.009585
ORF1ab/nsp874A74VgCtgTt33P.1.10.000953
ORF1ab/nsp874A74VgCtgTt22A.10.000564
ORF1ab/nsp874A74VgCtgTt22A.23.10.001408
ORF1ab/nsp874A74VgCtgTt22AU.20.004843
ORF1ab/nsp874A74VgCtgTt22AY.1000.000092
ORF1ab/nsp874A74VgCtgTt22AY.1210.000271
ORF1ab/nsp874A74VgCtgTt22B.1.1.2160.001781
ORF1ab/nsp874A74VgCtgTt22B.1.1.330.000842
ORF1ab/nsp874A74VgCtgTt22B.1.1.4480.004065
ORF1ab/nsp874A74VgCtgTt22B.1.177.860.000367
ORF1ab/nsp874A74VgCtgTt22B.1.2360.004107
ORF1ab/nsp874A74VgCtgTt22B.1.258.110.000793
ORF1ab/nsp874A74VgCtgTt22B.1.2600.006689
ORF1ab/nsp874A74VgCtgTt22B.1.36.180.00084
ORF1ab/nsp874A74VgCtgTt22B.1.36.290.001035
ORF1ab/nsp874A74VgCtgTt22B.1.3960.001411
ORF1ab/nsp874A74VgCtgTt22B.1.4590.008163
ORF1ab/nsp874A74VgCtgTt12B.1.4620.007246
ORF1ab/nsp874A74VgCtgTt22B.1.5600.009259
ORF1ab/nsp874A74VgCtgTt22B.1.6090.000959
ORF1ab/nsp874A74VgCtgTt22B.1.617.10.000258
ORF1ab/nsp874A74VgCtgTt22D.20.00015
ORF1ab/nsp874A74VgCtgTt22P.1.140.000096
ORF1ab/nsp874A74VgCtgTt11AP.10.001502
ORF1ab/nsp874A74VgCtgTt11AY.1140.000231
ORF1ab/nsp874A74VgCtgTt11AY.200.000039
ORF1ab/nsp874A74VgCtgTt11AY.230.00007
ORF1ab/nsp874A74VgCtgTt11AY.250.000006
ORF1ab/nsp874A74VgCtgTt11AY.260.000028
ORF1ab/nsp874A74VgCtgTt11AY.290.000016
ORF1ab/nsp874A74VgCtgTt11AY.4.20.000022
ORF1ab/nsp874A74VgCtgTt11AY.450.000122
ORF1ab/nsp874A74VgCtgTt11AY.470.000031
ORF1ab/nsp874A74VgCtgTt11AY.540.000095
ORF1ab/nsp874A74VgCtgTt11AY.550.000917
ORF1ab/nsp874A74VgCtgTt11AY.60.000041
ORF1ab/nsp874A74VgCtgTt11AY.620.000436
ORF1ab/nsp874A74VgCtgTt11AY.670.000464
ORF1ab/nsp874A74VgCtgTt11AY.700.000209
ORF1ab/nsp874A74VgCtgTt11AY.750.000056
ORF1ab/nsp874A74VgCtgTt11AY.9.10.000084
ORF1ab/nsp874A74VgCtgTt11AY.9.20.000037
ORF1ab/nsp874A74VgCtgTt11B.1.1.10.000327
ORF1ab/nsp874A74VgCtgTt11B.1.1.100.001115
ORF1ab/nsp874A74VgCtgTt11B.1.1.1480.008772
ORF1ab/nsp874A74VgCtgTt11B.1.1.1740.003378
ORF1ab/nsp874A74VgCtgTt11B.1.1.2790.001121
ORF1ab/nsp874A74VgCtgTt11B.1.1.3090.005848
ORF1ab/nsp874A74VgCtgTt11B.1.1.3220.008772
ORF1ab/nsp874A74VgCtgTt11B.1.1.3970.002252
ORF1ab/nsp874A74VgCtgTt11B.1.1.4160.000905
ORF1ab/nsp874A74VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp874A74VgCtgTt11B.1.1.5280.004808
ORF1ab/nsp874A74VgCtgTt11B.1.1530.018868
ORF1ab/nsp874A74VgCtgTt11B.1.160.160.000929
ORF1ab/nsp874A74VgCtgTt11B.1.177.460.000918
ORF1ab/nsp874A74VgCtgTt11B.1.177.550.002331
ORF1ab/nsp874A74VgCtgTt11B.1.177.70.000165
ORF1ab/nsp874A74VgCtgTt11B.1.177.730.000566
ORF1ab/nsp874A74VgCtgTt11B.1.220.001318
ORF1ab/nsp874A74VgCtgTt11B.1.258.170.000104
ORF1ab/nsp874A74VgCtgTt11B.1.3150.006061
ORF1ab/nsp874A74VgCtgTt11B.1.36.390.002217
ORF1ab/nsp874A74VgCtgTt11B.1.3660.004878
ORF1ab/nsp874A74VgCtgTt11B.1.3990.001934
ORF1ab/nsp874A74VgCtgTt11B.1.4270.00005
ORF1ab/nsp874A74VgCtgTt11B.1.438.10.000107
ORF1ab/nsp874A74VgCtgTt11B.1.5210.004975
ORF1ab/nsp874A74VgCtgTt11B.1.5760.000907
ORF1ab/nsp874A74VgCtgTt11B.1.5820.000491
ORF1ab/nsp874A74VgCtgTt11B.1.6370.000073
ORF1ab/nsp874A74VgCtgTt11B.1.940.027027
ORF1ab/nsp874A74VgCtgTt11B.270.015385
ORF1ab/nsp874A74VgCtgTt11B.400.000364
ORF1ab/nsp874A74VgCtgTt11B.6.60.000889
ORF1ab/nsp874A74VgCtgTt11C.300.001727
ORF1ab/nsp874A74VgCtgTt11C.370.000116
ORF1ab/nsp874A74VgCtgTt11D.30.005917
ORF1ab/nsp874A74VgCtgTt11N.90.005952
ORF1ab/nsp874A74VgCtgTt11P.1.170.000162
ORF1ab/nsp874A74VgCtgTt11P.20.000187
ORF1ab/nsp874A74VgCtgTt11Q.10.000126
ORF1ab/nsp874A74VgCtgTt11Q.30.000145
ORF1ab/nsp874A74VgCtgTt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.