CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 68 | T68T | T4010T | syn | acC | acT | 4029 | 3538 | 0.878134 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68T | T4010T | syn | acC | acA | 4029 | 489 | 0.12137 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68T | T4010T | syn | acC | acG | 4029 | 2 | 0.000496401 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68I | T4010I | nonsyn | aCc | aTc | 519 | 518 | 0.998073 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68I | T4010I | nonsyn | aCC | aTT | 519 | 1 | 0.00192678 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68A | T4010A | nonsyn | Acc | Gcc | 167 | 167 | 1 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68N | T4010N | nonsyn | aCc | aAc | 20 | 20 | 1 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68S | T4010S | nonsyn | aCc | aGc | 14 | 10 | 0.714286 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68S | T4010S | nonsyn | Acc | Tcc | 14 | 4 | 0.285714 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68del | T4010del | del | ACC | --- | 11 | 11 | 1 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68P | T4010P | nonsyn | Acc | Ccc | 6 | 6 | 1 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68del1 | T4010del1 | del | aCc | a-c | 3 | 3 | 1 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68del2 | T4010del2 | del | aCC | a-- | 2 | 2 | 1 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68M | T4010M | nonsyn | aCC | aTG | 1 | 1 | 1 | 12293-12295 |
ORF1ab/nsp8 | 68 | T68F | T4010F | nonsyn | ACc | TTc | 1 | 1 | 1 | 12293-12295 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3538 | 4029 | All | 0.000677 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 489 | 4029 | All | 0.000094 |
ORF1ab/nsp8 | 68 | T68T | acC | acG | 2 | 4029 | All | 0 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1903 | 1914 | B.1.1.7 | 0.001704 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 11 | 1914 | B.1.1.7 | 0.00001 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 518 | 519 | All | 0.000099 |
ORF1ab/nsp8 | 68 | T68I | aCC | aTT | 1 | 519 | All | 0 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 433 | 433 | AY.23 | 0.030202 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 315 | 315 | B.1.398 | 0.9375 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 178 | 183 | AY.4 | 0.000277 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 5 | 183 | AY.4 | 0.000008 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 167 | 167 | All | 0.000032 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 123 | 127 | AY.102 | 0.003261 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 4 | 127 | AY.102 | 0.000106 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 99 | 107 | B.1.617.2 | 0.000373 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 8 | 107 | B.1.617.2 | 0.00003 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 92 | 92 | AY.4 | 0.000143 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 65 | 73 | P.1 | 0.001024 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 8 | 73 | P.1 | 0.000126 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 63 | 64 | B.1.2 | 0.000555 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 64 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 56 | 56 | B.1.1.429 | 0.258065 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 55 | 55 | AY.25 | 0.000331 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 54 | 55 | B.1.1.7 | 0.000048 |
ORF1ab/nsp8 | 68 | T68I | aCC | aTT | 1 | 55 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 54 | 54 | B.1.177.2 | 0.245455 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 49 | 49 | AY.43 | 0.000217 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 45 | 47 | AY.26 | 0.001274 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 2 | 47 | AY.26 | 0.000057 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 45 | 45 | B.1.221 | 0.003196 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 43 | 43 | B.1.304 | 1 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 37 | 38 | AY.103 | 0.00023 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 38 | AY.103 | 0.000006 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 38 | 38 | AY.25 | 0.000229 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 37 | 37 | AY.44 | 0.000225 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 36 | 36 | AY.68 | 0.009855 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 31 | 32 | AY.43 | 0.000137 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 32 | AY.43 | 0.000004 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 26 | 26 | AY.4 | 0.00004 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 12 | 23 | B.1 | 0.00011 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 10 | 23 | B.1 | 0.000092 |
ORF1ab/nsp8 | 68 | T68T | acC | acG | 1 | 23 | B.1 | 0.000009 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 23 | 23 | B.1.177.81 | 0.004354 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 22 | 22 | P.1 | 0.000347 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 18 | 21 | AY.39 | 0.000445 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 3 | 21 | AY.39 | 0.000074 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 18 | 21 | AY.44 | 0.00011 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 3 | 21 | AY.44 | 0.000018 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 20 | 20 | All | 0.000004 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 20 | 20 | B.1 | 0.000183 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 18 | 18 | B.1.221 | 0.001279 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 16 | 16 | B.1.1.397 | 0.036036 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 8 | 15 | B.1.1 | 0.000145 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 7 | 15 | B.1.1 | 0.000127 |
ORF1ab/nsp8 | 68 | T68S | aCc | aGc | 10 | 14 | All | 0.000002 |
ORF1ab/nsp8 | 68 | T68S | Acc | Tcc | 4 | 14 | All | 0.000001 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 13 | 13 | AY.4.2 | 0.000282 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 12 | 13 | AY.6 | 0.000494 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 13 | AY.6 | 0.000041 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 12 | 12 | AY.34 | 0.001164 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 12 | 12 | AY.99.2 | 0.001106 |
ORF1ab/nsp8 | 68 | T68del | ACC | --- | 11 | 11 | All | 0.000002 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 11 | 11 | AY.45 | 0.001339 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 7 | 9 | AY.56 | 0.011236 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 9 | AY.56 | 0.00321 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 9 | 9 | B.1.1.214 | 0.000499 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 8 | 8 | B.1.1.306 | 0.003507 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 8 | 8 | Q.1 | 0.001011 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 7 | 7 | AY.109 | 0.005178 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 4 | 7 | B.1.429 | 0.000094 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 7 | B.1.429 | 0.000071 |
ORF1ab/nsp8 | 68 | T68P | Acc | Ccc | 6 | 6 | All | 0.000001 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 5 | 6 | AY.116 | 0.001434 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 6 | AY.116 | 0.000287 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 4 | 6 | AY.119 | 0.000141 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 2 | 6 | AY.119 | 0.000071 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 4 | 6 | AY.3 | 0.00004 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 6 | AY.3 | 0.00001 |
ORF1ab/nsp8 | 68 | T68T | acC | acG | 1 | 6 | AY.3 | 0.00001 |
ORF1ab/nsp8 | 68 | T68S | aCc | aGc | 4 | 6 | AY.4 | 0.000006 |
ORF1ab/nsp8 | 68 | T68S | Acc | Tcc | 2 | 6 | AY.4 | 0.000003 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 6 | 6 | AY.58 | 0.005445 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 6 | 6 | B.1.1.347 | 0.109091 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 4 | 6 | Q.8 | 0.00066 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 2 | 6 | Q.8 | 0.00033 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 5 | 5 | A | 0.001935 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 4 | 5 | AY.46 | 0.000416 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 5 | AY.46 | 0.000104 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 5 | 5 | B.1.1.261 | 0.043103 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 4 | AY.20 | 0.000117 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 4 | AY.20 | 0.000039 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 4 | 4 | AY.24 | 0.001724 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 4 | 4 | B.1.1.218 | 0.030769 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 4 | 4 | B.1.177.69 | 0.005935 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 4 | 4 | B.1.362 | 0.006163 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 3 | 4 | B.1.526 | 0.000071 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 4 | B.1.526 | 0.000024 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp8 | 68 | T68del1 | aCc | a-c | 3 | 3 | All | 0.000001 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 2 | 3 | B.1.1.464 | 0.002946 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 3 | B.1.1.464 | 0.001473 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | B.1.36.26 | 0.008571 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp8 | 68 | T68del2 | aCC | a-- | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 68 | T68del | ACC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp8 | 68 | T68S | aCc | aGc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp8 | 68 | T68del | ACC | --- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp8 | 68 | T68S | Acc | Tcc | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 68 | T68S | aCc | aGc | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp8 | 68 | T68P | Acc | Ccc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp8 | 68 | T68F | ACc | TTc | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 68 | T68M | aCC | aTG | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp8 | 68 | T68del | ACC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 68 | T68S | Acc | Tcc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp8 | 68 | T68del2 | aCC | a-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp8 | 68 | T68del1 | aCc | a-c | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp8 | 68 | T68S | aCc | aGc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp8 | 68 | T68del2 | aCC | a-- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp8 | 68 | T68M | aCC | aTG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp8 | 68 | T68del | ACC | --- | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp8 | 68 | T68S | aCc | aGc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp8 | 68 | T68del1 | aCc | a-c | 1 | 1 | B | 0.000128 |
ORF1ab/nsp8 | 68 | T68P | Acc | Ccc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 68 | T68del1 | aCc | a-c | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 68 | T68del | ACC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 68 | T68del | ACC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp8 | 68 | T68F | ACc | TTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 68 | T68P | Acc | Ccc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp8 | 68 | T68P | Acc | Ccc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp8 | 68 | T68P | Acc | Ccc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp8 | 68 | T68del | ACC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 68 | T68P | Acc | Ccc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 1 | B.1.344 | 0.008197 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp8 | 68 | T68S | aCc | aGc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp8 | 68 | T68A | Acc | Gcc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp8 | 68 | T68T | acC | acA | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp8 | 68 | T68N | aCc | aAc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 68 | T68del | ACC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp8 | 68 | T68del | ACC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp8 | 68 | T68I | aCc | aTc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp8 | 68 | T68T | acC | acT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|