CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 53 & Codon = gTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp853A53VA3995VnonsyngCagTa103010010.97184512248-12250

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp853A53VgCagTa10011030All0.000191
ORF1ab/nsp853A53VgCagTa232233AY.40.000361
ORF1ab/nsp853A53VgCagTa202202B.1.1.2940.255696
ORF1ab/nsp853A53VgCagTa190190AY.250.001143
ORF1ab/nsp853A53VgCagTa82107B.1.1.70.000073
ORF1ab/nsp853A53VgCagTa2626B.1.20.000229
ORF1ab/nsp853A53VgCagTa1920B.1.10.000345
ORF1ab/nsp853A53VgCagTa2020B.1.617.20.000075
ORF1ab/nsp853A53VgCagTa1515B.40.033113
ORF1ab/nsp853A53VgCagTa1313M.31
ORF1ab/nsp853A53VgCagTa1111B.1.1.3180.003319
ORF1ab/nsp853A53VgCagTa1010AY.100.005299
ORF1ab/nsp853A53VgCagTa1010B.10.000092
ORF1ab/nsp853A53VgCagTa88AY.440.000049
ORF1ab/nsp853A53VgCagTa77AY.1030.000043
ORF1ab/nsp853A53VgCagTa66AY.260.00017
ORF1ab/nsp853A53VgCagTa66AY.470.000187
ORF1ab/nsp853A53VgCagTa66B.1.1100.027149
ORF1ab/nsp853A53VgCagTa66B.1.6210.000531
ORF1ab/nsp853A53VgCagTa66M.20.5
ORF1ab/nsp853A53VgCagTa55AY.1000.00023
ORF1ab/nsp853A53VgCagTa55B.1.4270.000252
ORF1ab/nsp853A53VgCagTa44AY.1020.000106
ORF1ab/nsp853A53VgCagTa44AY.390.000099
ORF1ab/nsp853A53VgCagTa44AY.430.000018
ORF1ab/nsp853A53VgCagTa44B.1.3690.001141
ORF1ab/nsp853A53VgCagTa24P.10.000032
ORF1ab/nsp853A53VgCagTa33AY.4.20.000065
ORF1ab/nsp853A53VgCagTa33AY.460.000312
ORF1ab/nsp853A53VgCagTa33AY.540.000286
ORF1ab/nsp853A53VgCagTa33AY.940.001328
ORF1ab/nsp853A53VgCagTa33B.1.1.3110.001074
ORF1ab/nsp853A53VgCagTa33B.1.2210.000213
ORF1ab/nsp853A53VgCagTa33B.1.2580.0002
ORF1ab/nsp853A53VgCagTa33B.1.3510.000089
ORF1ab/nsp853A53VgCagTa33B.1.4660.069767
ORF1ab/nsp853A53VgCagTa33C.10.007177
ORF1ab/nsp853A53VgCagTa33C.36.30.001702
ORF1ab/nsp853A53VgCagTa33P.1.40.00293
ORF1ab/nsp853A53VgCagTa22AD.20.000438
ORF1ab/nsp853A53VgCagTa22AY.1190.000071
ORF1ab/nsp853A53VgCagTa22AY.200.000078
ORF1ab/nsp853A53VgCagTa22AY.850.000854
ORF1ab/nsp853A53VgCagTa22B.1.1.2220.000408
ORF1ab/nsp853A53VgCagTa22B.1.1.3480.001592
ORF1ab/nsp853A53VgCagTa22B.1.177.730.001133
ORF1ab/nsp853A53VgCagTa22B.1.2340.000264
ORF1ab/nsp853A53VgCagTa22B.1.3490.00143
ORF1ab/nsp853A53VgCagTa22B.1.4290.000047
ORF1ab/nsp853A53VgCagTa22B.1.4450.023529
ORF1ab/nsp853A53VgCagTa22B.1.5260.000047
ORF1ab/nsp853A53VgCagTa22B.1.6370.000146
ORF1ab/nsp853A53VgCagTa22Q.80.00033
ORF1ab/nsp853A53VgCagTa11AT.10.005128
ORF1ab/nsp853A53VgCagTa11AY.1180.000063
ORF1ab/nsp853A53VgCagTa11AY.120.20.001285
ORF1ab/nsp853A53VgCagTa11AY.230.00007
ORF1ab/nsp853A53VgCagTa11AY.290.000016
ORF1ab/nsp853A53VgCagTa11AY.320.000532
ORF1ab/nsp853A53VgCagTa11AY.34.10.00051
ORF1ab/nsp853A53VgCagTa11AY.39.10.00004
ORF1ab/nsp853A53VgCagTa11AY.450.000122
ORF1ab/nsp853A53VgCagTa11AY.50.000021
ORF1ab/nsp853A53VgCagTa11AY.60.000041
ORF1ab/nsp853A53VgCagTa11AY.610.000105
ORF1ab/nsp853A53VgCagTa11AY.750.000056
ORF1ab/nsp853A53VgCagTa11AY.930.000273
ORF1ab/nsp853A53VgCagTa11AY.99.20.000092
ORF1ab/nsp853A53VgCagTa11AZ.10.000867
ORF1ab/nsp853A53VgCagTa11B.1.1.10.000327
ORF1ab/nsp853A53VgCagTa11B.1.1.1890.001513
ORF1ab/nsp853A53VgCagTa11B.1.1.330.000421
ORF1ab/nsp853A53VgCagTa11B.1.1050.009615
ORF1ab/nsp853A53VgCagTa11B.1.110.30.000718
ORF1ab/nsp853A53VgCagTa11B.1.1770.000013
ORF1ab/nsp853A53VgCagTa11B.1.3110.000275
ORF1ab/nsp853A53VgCagTa11B.1.360.000146
ORF1ab/nsp853A53VgCagTa11B.1.36.290.000517
ORF1ab/nsp853A53VgCagTa11B.1.3610.001289
ORF1ab/nsp853A53VgCagTa11B.1.5740.002151
ORF1ab/nsp853A53VgCagTa11B.1.617.10.000129
ORF1ab/nsp853A53VgCagTa11B.1.6280.000352
ORF1ab/nsp853A53VgCagTa11C.370.000116
ORF1ab/nsp853A53VgCagTa11D.20.000075
ORF1ab/nsp853A53VgCagTa11P.1.120.000484
ORF1ab/nsp853A53VgCagTa11Q.10.000126
ORF1ab/nsp853A53VgCagTa11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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