CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 53

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp853A53AA3995AsyngcAgcT190110100.53129912248-12250
ORF1ab/nsp853A53AA3995AsyngcAgcG19018570.45081512248-12250
ORF1ab/nsp853A53AA3995AsyngcAgcC1901340.017885312248-12250
ORF1ab/nsp853A53VA3995VnonsyngCagTa103010010.97184512248-12250
ORF1ab/nsp853A53VA3995VnonsyngCAgTT1030220.021359212248-12250
ORF1ab/nsp853A53VA3995VnonsyngCAgTG103070.0067961212248-12250
ORF1ab/nsp853A53TA3995TnonsynGcaAca2562540.99218812248-12250
ORF1ab/nsp853A53TA3995TnonsynGcAAcT25620.007812512248-12250
ORF1ab/nsp853A53SA3995SnonsynGcaTca1471300.88435412248-12250
ORF1ab/nsp853A53SA3995SnonsynGCAAGT147120.081632712248-12250
ORF1ab/nsp853A53SA3995SnonsynGcATcT14730.020408212248-12250
ORF1ab/nsp853A53SA3995SnonsynGcATcG14710.0068027212248-12250
ORF1ab/nsp853A53SA3995SnonsynGcATcC14710.0068027212248-12250
ORF1ab/nsp853A53IA3995InonsynGCaATa77400.51948112248-12250
ORF1ab/nsp853A53IA3995InonsynGCAATT77370.48051912248-12250
ORF1ab/nsp853A53LA3995LnonsynGCaTTa51380.74509812248-12250
ORF1ab/nsp853A53LA3995LnonsynGCATTG51110.21568612248-12250
ORF1ab/nsp853A53LA3995LnonsynGCACTT5110.019607812248-12250
ORF1ab/nsp853A53LA3995LnonsynGCaCTa5110.019607812248-12250
ORF1ab/nsp853A53XA3995XnonsynGCaTAa46260.56521712248-12250
ORF1ab/nsp853A53XA3995XnonsynGCaTGa46130.28260912248-12250
ORF1ab/nsp853A53XA3995XnonsynGCATAG4670.15217412248-12250
ORF1ab/nsp853A53FA3995FnonsynGCATTT3939112248-12250
ORF1ab/nsp853A53KA3995KnonsynGCaAAa38300.78947412248-12250
ORF1ab/nsp853A53KA3995KnonsynGCAAAG3880.21052612248-12250
ORF1ab/nsp853A53EA3995EnonsyngCagAa36310.86111112248-12250
ORF1ab/nsp853A53EA3995EnonsyngCAgAG3650.13888912248-12250
ORF1ab/nsp853A53NA3995NnonsynGCAAAT2626112248-12250
ORF1ab/nsp853A53YA3995YnonsynGCATAT2525112248-12250
ORF1ab/nsp853A53GA3995GnonsyngCagGa18100.55555612248-12250
ORF1ab/nsp853A53GA3995GnonsyngCAgGT1870.38888912248-12250
ORF1ab/nsp853A53GA3995GnonsyngCAgGC1810.055555612248-12250
ORF1ab/nsp853A53RA3995RnonsynGCaAGa16110.687512248-12250
ORF1ab/nsp853A53RA3995RnonsynGCAAGG1630.187512248-12250
ORF1ab/nsp853A53RA3995RnonsynGCACGT1610.062512248-12250
ORF1ab/nsp853A53RA3995RnonsynGCaCGa1610.062512248-12250
ORF1ab/nsp853A53CA3995CnonsynGCATGT15140.93333312248-12250
ORF1ab/nsp853A53CA3995CnonsynGCATGC1510.066666712248-12250
ORF1ab/nsp853A53DA3995DnonsyngCAgAT1414112248-12250
ORF1ab/nsp853A53delA3995deldelGCA---1212112248-12250
ORF1ab/nsp853A53MA3995MnonsynGCAATG1111112248-12250
ORF1ab/nsp853A53PA3995PnonsynGcaCca55112248-12250
ORF1ab/nsp853A53WA3995WnonsynGCATGG33112248-12250
ORF1ab/nsp853A53del1A3995del1delGcA-cT11112248-12250

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp853A53AgcAgcT10101901All0.000193
ORF1ab/nsp853A53AgcAgcG8571901All0.000164
ORF1ab/nsp853A53AgcAgcC341901All0.000007
ORF1ab/nsp853A53VgCagTa10011030All0.000191
ORF1ab/nsp853A53VgCAgTT221030All0.000004
ORF1ab/nsp853A53VgCAgTG71030All0.000001
ORF1ab/nsp853A53AgcAgcT816816AY.1100.091954
ORF1ab/nsp853A53AgcAgcG644650AY.40.001002
ORF1ab/nsp853A53AgcAgcC6650AY.40.000009
ORF1ab/nsp853A53TGcaAca254256All0.000049
ORF1ab/nsp853A53TGcAAcT2256All0
ORF1ab/nsp853A53VgCagTa232233AY.40.000361
ORF1ab/nsp853A53VgCAgTG1233AY.40.000002
ORF1ab/nsp853A53VgCagTa202202B.1.1.2940.255696
ORF1ab/nsp853A53VgCagTa190190AY.250.001143
ORF1ab/nsp853A53SGcaTca130147All0.000025
ORF1ab/nsp853A53SGCAAGT12147All0.000002
ORF1ab/nsp853A53SGcATcT3147All0.000001
ORF1ab/nsp853A53SGcATcC1147All0
ORF1ab/nsp853A53SGcATcG1147All0
ORF1ab/nsp853A53VgCagTa82107B.1.1.70.000073
ORF1ab/nsp853A53VgCAgTT20107B.1.1.70.000018
ORF1ab/nsp853A53VgCAgTG5107B.1.1.70.000004
ORF1ab/nsp853A53IGCaATa4077All0.000008
ORF1ab/nsp853A53IGCAATT3777All0.000007
ORF1ab/nsp853A53IGCaATa3873B.1.1.70.000034
ORF1ab/nsp853A53IGCAATT3573B.1.1.70.000031
ORF1ab/nsp853A53AgcAgcT6767AY.160.025437
ORF1ab/nsp853A53TGcaAca6567B.1.1.70.000058
ORF1ab/nsp853A53TGcAAcT267B.1.1.70.000002
ORF1ab/nsp853A53TGcaAca6565AY.40.000101
ORF1ab/nsp853A53AgcAgcT3961B.1.1.70.000035
ORF1ab/nsp853A53AgcAgcG1261B.1.1.70.000011
ORF1ab/nsp853A53AgcAgcC1061B.1.1.70.000009
ORF1ab/nsp853A53AgcAgcG5353AY.4.40.021686
ORF1ab/nsp853A53LGCaTTa3851All0.000007
ORF1ab/nsp853A53LGCATTG1151All0.000002
ORF1ab/nsp853A53LGCACTT151All0
ORF1ab/nsp853A53LGCaCTa151All0
ORF1ab/nsp853A53XGCaTAa2646All0.000005
ORF1ab/nsp853A53XGCaTGa1346All0.000002
ORF1ab/nsp853A53XGCATAG746All0.000001
ORF1ab/nsp853A53LGCaTTa3446B.1.1.70.00003
ORF1ab/nsp853A53LGCATTG1046B.1.1.70.000009
ORF1ab/nsp853A53LGCACTT146B.1.1.70.000001
ORF1ab/nsp853A53LGCaCTa146B.1.1.70.000001
ORF1ab/nsp853A53XGCaTAa2443B.1.1.70.000021
ORF1ab/nsp853A53XGCaTGa1243B.1.1.70.000011
ORF1ab/nsp853A53XGCATAG743B.1.1.70.000006
ORF1ab/nsp853A53FGCATTT3939All0.000007
ORF1ab/nsp853A53KGCaAAa3038All0.000006
ORF1ab/nsp853A53KGCAAAG838All0.000002
ORF1ab/nsp853A53EgCagAa3136All0.000006
ORF1ab/nsp853A53EgCAgAG536All0.000001
ORF1ab/nsp853A53KGCaAAa2836B.1.1.70.000025
ORF1ab/nsp853A53KGCAAAG836B.1.1.70.000007
ORF1ab/nsp853A53AgcAgcG1936B.1.617.20.000072
ORF1ab/nsp853A53AgcAgcT1636B.1.617.20.00006
ORF1ab/nsp853A53AgcAgcC136B.1.617.20.000004
ORF1ab/nsp853A53FGCATTT3535B.1.1.70.000031
ORF1ab/nsp853A53NGCAAAT2626All0.000005
ORF1ab/nsp853A53SGcaTca1326B.1.1.70.000012
ORF1ab/nsp853A53SGCAAGT1226B.1.1.70.000011
ORF1ab/nsp853A53SGcATcT126B.1.1.70.000001
ORF1ab/nsp853A53VgCagTa2626B.1.20.000229
ORF1ab/nsp853A53YGCATAT2525All0.000005
ORF1ab/nsp853A53NGCAAAT2424B.1.1.70.000021
ORF1ab/nsp853A53YGCATAT2323B.1.1.70.000021
ORF1ab/nsp853A53AgcAgcT2222AY.4.50.002365
ORF1ab/nsp853A53AgcAgcG2121B.1.36.380.034483
ORF1ab/nsp853A53TGcaAca2020AY.4.20.000434
ORF1ab/nsp853A53VgCagTa1920B.1.10.000345
ORF1ab/nsp853A53VgCAgTT120B.1.10.000018
ORF1ab/nsp853A53EgCagAa1520B.1.1.70.000013
ORF1ab/nsp853A53EgCAgAG520B.1.1.70.000004
ORF1ab/nsp853A53VgCagTa2020B.1.617.20.000075
ORF1ab/nsp853A53GgCagGa1018All0.000002
ORF1ab/nsp853A53GgCAgGT718All0.000001
ORF1ab/nsp853A53GgCAgGC118All0
ORF1ab/nsp853A53RGCaAGa1116All0.000002
ORF1ab/nsp853A53RGCAAGG316All0.000001
ORF1ab/nsp853A53RGCaCGa116All0
ORF1ab/nsp853A53RGCACGT116All0
ORF1ab/nsp853A53RGCaAGa1116B.1.1.70.00001
ORF1ab/nsp853A53RGCAAGG316B.1.1.70.000003
ORF1ab/nsp853A53RGCaCGa116B.1.1.70.000001
ORF1ab/nsp853A53RGCACGT116B.1.1.70.000001
ORF1ab/nsp853A53CGCATGT1415All0.000003
ORF1ab/nsp853A53CGCATGC115All0
ORF1ab/nsp853A53GgCagGa815B.1.1.70.000007
ORF1ab/nsp853A53GgCAgGT715B.1.1.70.000006
ORF1ab/nsp853A53VgCagTa1515B.40.033113
ORF1ab/nsp853A53DgCAgAT1414All0.000003
ORF1ab/nsp853A53CGCATGT1414B.1.1.70.000013
ORF1ab/nsp853A53DgCAgAT1414B.1.1.70.000013
ORF1ab/nsp853A53AgcAgcG1214B.1.1770.000158
ORF1ab/nsp853A53AgcAgcT214B.1.1770.000026
ORF1ab/nsp853A53TGcaAca1414B.1.617.20.000053
ORF1ab/nsp853A53SGcaTca1313AY.40.00002
ORF1ab/nsp853A53AgcAgcG1313D.20.000976
ORF1ab/nsp853A53VgCagTa1313M.31
ORF1ab/nsp853A53delGCA---1212All0.000002
ORF1ab/nsp853A53EgCagAa1212AY.430.000053
ORF1ab/nsp853A53SGcaTca1212B.1.617.20.000045
ORF1ab/nsp853A53MGCAATG1111All0.000002
ORF1ab/nsp853A53VgCagTa1111B.1.1.3180.003319
ORF1ab/nsp853A53MGCAATG1111B.1.1.70.00001
ORF1ab/nsp853A53TGcaAca1111B.1.3510.000327
ORF1ab/nsp853A53VgCagTa1010AY.100.005299
ORF1ab/nsp853A53AgcAgcT1010AY.300.003957
ORF1ab/nsp853A53TGcaAca1010AY.440.000061
ORF1ab/nsp853A53SGcaTca1010AY.46.60.000722
ORF1ab/nsp853A53VgCagTa1010B.10.000092
ORF1ab/nsp853A53TGcaAca1010B.1.10.000181
ORF1ab/nsp853A53SGcaTca1010B.1.20.000088
ORF1ab/nsp853A53SGcaTca1010B.1.5260.000235
ORF1ab/nsp853A53AgcAgcG710P.10.00011
ORF1ab/nsp853A53AgcAgcT310P.10.000047
ORF1ab/nsp853A53AgcAgcG89P.1.140.000382
ORF1ab/nsp853A53AgcAgcT19P.1.140.000048
ORF1ab/nsp853A53SGcaTca88AY.200.000311
ORF1ab/nsp853A53AgcAgcG58AY.250.00003
ORF1ab/nsp853A53AgcAgcT28AY.250.000012
ORF1ab/nsp853A53AgcAgcC18AY.250.000006
ORF1ab/nsp853A53VgCagTa88AY.440.000049
ORF1ab/nsp853A53AgcAgcG68B.1.10.000109
ORF1ab/nsp853A53AgcAgcT28B.1.10.000036
ORF1ab/nsp853A53AgcAgcG88B.1.617.10.001032
ORF1ab/nsp853A53VgCagTa77AY.1030.000043
ORF1ab/nsp853A53AgcAgcG47B.1.20.000035
ORF1ab/nsp853A53AgcAgcT37B.1.20.000026
ORF1ab/nsp853A53SGcaTca77B.1.258.140.006863
ORF1ab/nsp853A53SGcaTca66AY.116.10.001869
ORF1ab/nsp853A53SGcaTca66AY.250.000036
ORF1ab/nsp853A53TGcaAca66AY.260.00017
ORF1ab/nsp853A53VgCagTa66AY.260.00017
ORF1ab/nsp853A53VgCagTa66AY.470.000187
ORF1ab/nsp853A53VgCagTa66B.1.1100.027149
ORF1ab/nsp853A53VgCagTa66B.1.6210.000531
ORF1ab/nsp853A53AgcAgcG66B.1.6210.000531
ORF1ab/nsp853A53VgCagTa66M.20.5
ORF1ab/nsp853A53PGcaCca55All0.000001
ORF1ab/nsp853A53VgCagTa55AY.1000.00023
ORF1ab/nsp853A53AgcAgcG45AY.430.000018
ORF1ab/nsp853A53AgcAgcT15AY.430.000004
ORF1ab/nsp853A53AgcAgcC35B.10.000027
ORF1ab/nsp853A53AgcAgcT25B.10.000018
ORF1ab/nsp853A53TGcaAca55B.1.1.3510.013966
ORF1ab/nsp853A53VgCagTa55B.1.4270.000252
ORF1ab/nsp853A53AgcAgcT55B.1.5410.022124
ORF1ab/nsp853A53TGcaAca55P.10.000079
ORF1ab/nsp853A53VgCagTa44AY.1020.000106
ORF1ab/nsp853A53VgCagTa44AY.390.000099
ORF1ab/nsp853A53VgCagTa44AY.430.000018
ORF1ab/nsp853A53AgcAgcG34AY.440.000018
ORF1ab/nsp853A53AgcAgcT14AY.440.000006
ORF1ab/nsp853A53TGcaAca44B.1.1600.000125
ORF1ab/nsp853A53TGcaAca44B.1.2580.000266
ORF1ab/nsp853A53VgCagTa44B.1.3690.001141
ORF1ab/nsp853A53AgcAgcT44B.1.5260.000094
ORF1ab/nsp853A53VgCagTa24P.10.000032
ORF1ab/nsp853A53VgCAgTT14P.10.000016
ORF1ab/nsp853A53VgCAgTG14P.10.000016
ORF1ab/nsp853A53AgcAgcC44P.40.015209
ORF1ab/nsp853A53WGCATGG33All0.000001
ORF1ab/nsp853A53TGcaAca33AY.250.000018
ORF1ab/nsp853A53AgcAgcG33AY.290.000047
ORF1ab/nsp853A53VgCagTa33AY.4.20.000065
ORF1ab/nsp853A53SGcaTca33AY.440.000018
ORF1ab/nsp853A53VgCagTa33AY.460.000312
ORF1ab/nsp853A53VgCagTa33AY.540.000286
ORF1ab/nsp853A53VgCagTa33AY.940.001328
ORF1ab/nsp853A53SGcaTca33B.10.000027
ORF1ab/nsp853A53TGcaAca33B.10.000027
ORF1ab/nsp853A53SGcaTca23B.1.10.000036
ORF1ab/nsp853A53SGcATcT13B.1.10.000018
ORF1ab/nsp853A53TGcaAca33B.1.1.1660.1
ORF1ab/nsp853A53VgCagTa33B.1.1.3110.001074
ORF1ab/nsp853A53WGCATGG33B.1.1.70.000003
ORF1ab/nsp853A53VgCagTa33B.1.2210.000213
ORF1ab/nsp853A53VgCagTa33B.1.2580.0002
ORF1ab/nsp853A53VgCagTa33B.1.3510.000089
ORF1ab/nsp853A53VgCagTa33B.1.4660.069767
ORF1ab/nsp853A53VgCagTa33C.10.007177
ORF1ab/nsp853A53VgCagTa33C.36.30.001702
ORF1ab/nsp853A53SGcATcT13P.10.000016
ORF1ab/nsp853A53SGcaTca13P.10.000016
ORF1ab/nsp853A53SGcATcG13P.10.000016
ORF1ab/nsp853A53VgCagTa33P.1.40.00293
ORF1ab/nsp853A53VgCagTa22AD.20.000438
ORF1ab/nsp853A53AgcAgcT22AY.1000.000092
ORF1ab/nsp853A53TGcaAca22AY.1020.000053
ORF1ab/nsp853A53AgcAgcG12AY.1030.000006
ORF1ab/nsp853A53AgcAgcC12AY.1030.000006
ORF1ab/nsp853A53AgcAgcT22AY.1170.000169
ORF1ab/nsp853A53AgcAgcG22AY.1180.000125
ORF1ab/nsp853A53VgCagTa22AY.1190.000071
ORF1ab/nsp853A53SGcaTca22AY.1200.000074
ORF1ab/nsp853A53VgCagTa22AY.200.000078
ORF1ab/nsp853A53IGCAATT12AY.250.000006
ORF1ab/nsp853A53IGCaATa12AY.250.000006
ORF1ab/nsp853A53TGcaAca22AY.30.00002
ORF1ab/nsp853A53AgcAgcG12AY.30.00001
ORF1ab/nsp853A53AgcAgcT12AY.30.00001
ORF1ab/nsp853A53delGCA---22AY.350.000466
ORF1ab/nsp853A53AgcAgcG12AY.360.000148
ORF1ab/nsp853A53AgcAgcT12AY.360.000148
ORF1ab/nsp853A53SGcaTca22AY.390.000049
ORF1ab/nsp853A53AgcAgcG22AY.390.000049
ORF1ab/nsp853A53SGcaTca22AY.4.20.000043
ORF1ab/nsp853A53TGcaAca22AY.430.000009
ORF1ab/nsp853A53AgcAgcC22AY.470.000062
ORF1ab/nsp853A53AgcAgcG22AY.610.00021
ORF1ab/nsp853A53SGcaTca22AY.680.000547
ORF1ab/nsp853A53AgcAgcT22AY.840.000875
ORF1ab/nsp853A53VgCagTa22AY.850.000854
ORF1ab/nsp853A53VgCagTa22B.1.1.2220.000408
ORF1ab/nsp853A53AgcAgcG22B.1.1.330.000842
ORF1ab/nsp853A53VgCagTa22B.1.1.3480.001592
ORF1ab/nsp853A53AgcAgcG22B.1.1.5190.000079
ORF1ab/nsp853A53VgCagTa22B.1.177.730.001133
ORF1ab/nsp853A53VgCagTa22B.1.2340.000264
ORF1ab/nsp853A53VgCagTa22B.1.3490.00143
ORF1ab/nsp853A53SGcaTca12B.1.3910.001127
ORF1ab/nsp853A53SGcATcC12B.1.3910.001127
ORF1ab/nsp853A53GgCAgGC12B.1.3910.001127
ORF1ab/nsp853A53GgCagGa12B.1.3910.001127
ORF1ab/nsp853A53VgCagTa22B.1.4290.000047
ORF1ab/nsp853A53VgCagTa22B.1.4450.023529
ORF1ab/nsp853A53VgCagTa22B.1.5260.000047
ORF1ab/nsp853A53IGCaATa12B.1.5760.000907
ORF1ab/nsp853A53IGCAATT12B.1.5760.000907
ORF1ab/nsp853A53AgcAgcC22B.1.5770.001375
ORF1ab/nsp853A53delGCA---22B.1.617.20.000008
ORF1ab/nsp853A53VgCagTa22B.1.6370.000146
ORF1ab/nsp853A53TGcaAca22B.1.6370.000146
ORF1ab/nsp853A53LGCaTTa12P.10.000016
ORF1ab/nsp853A53LGCATTG12P.10.000016
ORF1ab/nsp853A53AgcAgcG22Q.30.00029
ORF1ab/nsp853A53VgCagTa22Q.80.00033
ORF1ab/nsp853A53AgcAgcG22R.10.00018
ORF1ab/nsp853A53del1GcA-cT11All0
ORF1ab/nsp853A53VgCagTa11AT.10.005128
ORF1ab/nsp853A53SGcaTca11AW.10.003049
ORF1ab/nsp853A53SGcaTca11AY.10.000396
ORF1ab/nsp853A53TGcaAca11AY.1000.000046
ORF1ab/nsp853A53SGcaTca11AY.1020.000027
ORF1ab/nsp853A53TGcaAca11AY.1030.000006
ORF1ab/nsp853A53AgcAgcT11AY.1110.000183
ORF1ab/nsp853A53SGcaTca11AY.1140.000231
ORF1ab/nsp853A53SGcaTca11AY.1160.000287
ORF1ab/nsp853A53VgCagTa11AY.1180.000063
ORF1ab/nsp853A53AgcAgcG11AY.1190.000035
ORF1ab/nsp853A53SGcaTca11AY.120.20.001285
ORF1ab/nsp853A53VgCagTa11AY.120.20.001285
ORF1ab/nsp853A53AgcAgcT11AY.180.010101
ORF1ab/nsp853A53delGCA---11AY.200.000039
ORF1ab/nsp853A53TGcaAca11AY.200.000039
ORF1ab/nsp853A53AgcAgcT11AY.230.00007
ORF1ab/nsp853A53delGCA---11AY.230.00007
ORF1ab/nsp853A53VgCagTa11AY.230.00007
ORF1ab/nsp853A53NGCAAAT11AY.250.000006
ORF1ab/nsp853A53LGCaTTa11AY.250.000006
ORF1ab/nsp853A53FGCATTT11AY.250.000006
ORF1ab/nsp853A53delGCA---11AY.250.000006
ORF1ab/nsp853A53XGCaTAa11AY.250.000006
ORF1ab/nsp853A53YGCATAT11AY.250.000006
ORF1ab/nsp853A53KGCaAAa11AY.250.000006
ORF1ab/nsp853A53VgCagTa11AY.290.000016
ORF1ab/nsp853A53VgCagTa11AY.320.000532
ORF1ab/nsp853A53AgcAgcG11AY.340.000097
ORF1ab/nsp853A53VgCagTa11AY.34.10.00051
ORF1ab/nsp853A53AgcAgcG11AY.350.000233
ORF1ab/nsp853A53TGcaAca11AY.390.000025
ORF1ab/nsp853A53VgCagTa11AY.39.10.00004
ORF1ab/nsp853A53AgcAgcC11AY.39.10.00004
ORF1ab/nsp853A53EgCagAa11AY.40.000002
ORF1ab/nsp853A53AgcAgcG11AY.420.00004
ORF1ab/nsp853A53PGcaCca11AY.430.000004
ORF1ab/nsp853A53SGcaTca11AY.430.000004
ORF1ab/nsp853A53EgCagAa11AY.440.000006
ORF1ab/nsp853A53GgCagGa11AY.440.000006
ORF1ab/nsp853A53SGcaTca11AY.450.000122
ORF1ab/nsp853A53VgCagTa11AY.450.000122
ORF1ab/nsp853A53AgcAgcG11AY.460.000104
ORF1ab/nsp853A53VgCagTa11AY.50.000021
ORF1ab/nsp853A53SGcaTca11AY.50.000021
ORF1ab/nsp853A53SGcaTca11AY.530.000288
ORF1ab/nsp853A53AgcAgcG11AY.570.000656
ORF1ab/nsp853A53VgCagTa11AY.60.000041
ORF1ab/nsp853A53VgCagTa11AY.610.000105
ORF1ab/nsp853A53TGcaAca11AY.690.000187
ORF1ab/nsp853A53VgCagTa11AY.750.000056
ORF1ab/nsp853A53delGCA---11AY.75.10.00018
ORF1ab/nsp853A53SGcaTca11AY.75.10.00018
ORF1ab/nsp853A53AgcAgcT11AY.850.000427
ORF1ab/nsp853A53AgcAgcG11AY.870.000833
ORF1ab/nsp853A53VgCagTa11AY.930.000273
ORF1ab/nsp853A53AgcAgcT11AY.930.000273
ORF1ab/nsp853A53VgCagTa11AY.99.20.000092
ORF1ab/nsp853A53VgCagTa11AZ.10.000867
ORF1ab/nsp853A53AgcAgcT11B0.000128
ORF1ab/nsp853A53delGCA---11B.10.000009
ORF1ab/nsp853A53FGCATTT11B.1.10.000018
ORF1ab/nsp853A53EgCagAa11B.1.10.000018
ORF1ab/nsp853A53LGCaTTa11B.1.10.000018
ORF1ab/nsp853A53delGCA---11B.1.10.000018
ORF1ab/nsp853A53PGcaCca11B.1.10.000018
ORF1ab/nsp853A53VgCagTa11B.1.1.10.000327
ORF1ab/nsp853A53TGcaAca11B.1.1.1570.000913
ORF1ab/nsp853A53VgCagTa11B.1.1.1890.001513
ORF1ab/nsp853A53TGcaAca11B.1.1.2140.000055
ORF1ab/nsp853A53AgcAgcG11B.1.1.2220.000204
ORF1ab/nsp853A53SGcaTca11B.1.1.280.000311
ORF1ab/nsp853A53VgCagTa11B.1.1.330.000421
ORF1ab/nsp853A53SGcaTca11B.1.1.370.000193
ORF1ab/nsp853A53PGcaCca11B.1.1.70.000001
ORF1ab/nsp853A53SGcaTca11B.1.1040.00369
ORF1ab/nsp853A53VgCagTa11B.1.1050.009615
ORF1ab/nsp853A53VgCagTa11B.1.110.30.000718
ORF1ab/nsp853A53AgcAgcC11B.1.1110.001175
ORF1ab/nsp853A53AgcAgcC11B.1.1600.000031
ORF1ab/nsp853A53VgCagTa11B.1.1770.000013
ORF1ab/nsp853A53SGcaTca11B.1.177.210.000076
ORF1ab/nsp853A53TGcaAca11B.1.177.230.003236
ORF1ab/nsp853A53AgcAgcG11B.1.177.40.000211
ORF1ab/nsp853A53TGcaAca11B.1.1790.003759
ORF1ab/nsp853A53TGcaAca11B.1.20.000009
ORF1ab/nsp853A53EgCagAa11B.1.20.000009
ORF1ab/nsp853A53SGcaTca11B.1.2340.000132
ORF1ab/nsp853A53VgCagTa11B.1.3110.000275
ORF1ab/nsp853A53VgCagTa11B.1.360.000146
ORF1ab/nsp853A53VgCagTa11B.1.36.290.000517
ORF1ab/nsp853A53VgCagTa11B.1.3610.001289
ORF1ab/nsp853A53AgcAgcC11B.1.3910.001127
ORF1ab/nsp853A53CGCATGC11B.1.3910.001127
ORF1ab/nsp853A53XGCaTGa11B.1.3910.001127
ORF1ab/nsp853A53delGCA---11B.1.4000.000429
ORF1ab/nsp853A53TGcaAca11B.1.4010.008197
ORF1ab/nsp853A53TGcaAca11B.1.4090.000781
ORF1ab/nsp853A53AgcAgcG11B.1.4250.002994
ORF1ab/nsp853A53AgcAgcG11B.1.4270.00005
ORF1ab/nsp853A53TGcaAca11B.1.438.10.000107
ORF1ab/nsp853A53TGcaAca11B.1.5270.003704
ORF1ab/nsp853A53VgCagTa11B.1.5740.002151
ORF1ab/nsp853A53TGcaAca11B.1.5750.000303
ORF1ab/nsp853A53TGcaAca11B.1.5760.000907
ORF1ab/nsp853A53NGCAAAT11B.1.5760.000907
ORF1ab/nsp853A53KGCaAAa11B.1.5760.000907
ORF1ab/nsp853A53LGCaTTa11B.1.5760.000907
ORF1ab/nsp853A53FGCATTT11B.1.5760.000907
ORF1ab/nsp853A53YGCATAT11B.1.5760.000907
ORF1ab/nsp853A53XGCaTAa11B.1.5760.000907
ORF1ab/nsp853A53PGcaCca11B.1.5960.000087
ORF1ab/nsp853A53VgCagTa11B.1.617.10.000129
ORF1ab/nsp853A53VgCagTa11B.1.6280.000352
ORF1ab/nsp853A53TGcaAca11B.1.930.000934
ORF1ab/nsp853A53del1GcA-cT11C.170.055556
ORF1ab/nsp853A53VgCagTa11C.370.000116
ORF1ab/nsp853A53PGcaCca11D.20.000075
ORF1ab/nsp853A53VgCagTa11D.20.000075
ORF1ab/nsp853A53delGCA---11N.40.004255
ORF1ab/nsp853A53FGCATTT11P.10.000016
ORF1ab/nsp853A53VgCagTa11P.1.120.000484
ORF1ab/nsp853A53AgcAgcG11P.1.40.000977
ORF1ab/nsp853A53VgCagTa11Q.10.000126
ORF1ab/nsp853A53VgCagTa11Q.30.000145
ORF1ab/nsp853A53TGcaAca11R.10.00009
ORF1ab/nsp853A53SGcaTca11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.