CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 51

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp851R51CR3993CnonsynCgtTgt25672567112242-12244
ORF1ab/nsp851R51LR3993LnonsyncGtcTt117211320.9658712242-12244
ORF1ab/nsp851R51LR3993LnonsynCGTTTA1172330.02815712242-12244
ORF1ab/nsp851R51LR3993LnonsynCGTTTG117270.005972712242-12244
ORF1ab/nsp851R51HR3993HnonsyncGtcAt935935112242-12244
ORF1ab/nsp851R51RR3993RsyncgTcgC3402980.87647112242-12244
ORF1ab/nsp851R51RR3993RsynCgTAgA340190.055882412242-12244
ORF1ab/nsp851R51RR3993RsynCgTAgG34080.023529412242-12244
ORF1ab/nsp851R51RR3993RsyncgTcgA34080.023529412242-12244
ORF1ab/nsp851R51RR3993RsyncgTcgG34070.020588212242-12244
ORF1ab/nsp851R51GR3993GnonsynCgtGgt69320.46376812242-12244
ORF1ab/nsp851R51GR3993GnonsynCgTGgA69240.34782612242-12244
ORF1ab/nsp851R51GR3993GnonsynCgTGgG69130.18840612242-12244
ORF1ab/nsp851R51XR3993XnonsynCgTTgA59320.54237312242-12244
ORF1ab/nsp851R51XR3993XnonsynCGTTAA59210.35593212242-12244
ORF1ab/nsp851R51XR3993XnonsynCGTTAG5960.10169512242-12244
ORF1ab/nsp851R51VR3993VnonsynCGTGTA51230.4509812242-12244
ORF1ab/nsp851R51VR3993VnonsynCGtGTt51220.43137312242-12244
ORF1ab/nsp851R51VR3993VnonsynCGTGTG5160.11764712242-12244
ORF1ab/nsp851R51SR3993SnonsynCgtAgt36340.94444412242-12244
ORF1ab/nsp851R51SR3993SnonsynCGtTCt3610.027777812242-12244
ORF1ab/nsp851R51SR3993SnonsynCGTTCA3610.027777812242-12244
ORF1ab/nsp851R51IR3993InonsynCGtATt34170.512242-12244
ORF1ab/nsp851R51IR3993InonsynCGTATA34170.512242-12244
ORF1ab/nsp851R51FR3993FnonsynCGtTTt3232112242-12244
ORF1ab/nsp851R51YR3993YnonsynCGtTAt2121112242-12244
ORF1ab/nsp851R51ER3993EnonsynCGTGAA20140.712242-12244
ORF1ab/nsp851R51ER3993EnonsynCGTGAG2060.312242-12244
ORF1ab/nsp851R51KR3993KnonsynCGTAAA18150.83333312242-12244
ORF1ab/nsp851R51KR3993KnonsynCGTAAG1830.16666712242-12244
ORF1ab/nsp851R51NR3993NnonsynCGtAAt1717112242-12244
ORF1ab/nsp851R51DR3993DnonsynCGtGAt1515112242-12244
ORF1ab/nsp851R51delR3993deldelCGT---1212112242-12244
ORF1ab/nsp851R51WR3993WnonsynCgTTgG1111112242-12244
ORF1ab/nsp851R51QR3993QnonsyncGTcAA750.71428612242-12244
ORF1ab/nsp851R51QR3993QnonsyncGTcAG720.28571412242-12244
ORF1ab/nsp851R51MR3993MnonsynCGTATG55112242-12244
ORF1ab/nsp851R51del1R3993del1delcGtc-t44112242-12244
ORF1ab/nsp851R51PR3993PnonsyncGtcCt320.66666712242-12244
ORF1ab/nsp851R51PR3993PnonsyncGTcCG310.33333312242-12244
ORF1ab/nsp851R51AR3993AnonsynCGTGCA210.512242-12244
ORF1ab/nsp851R51TR3993TnonsynCGTACA210.512242-12244
ORF1ab/nsp851R51AR3993AnonsynCGtGCt210.512242-12244
ORF1ab/nsp851R51TR3993TnonsynCGtACt210.512242-12244

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp851R51CCgtTgt25672567All0.000491
ORF1ab/nsp851R51LcGtcTt11321172All0.000217
ORF1ab/nsp851R51LCGTTTA331172All0.000006
ORF1ab/nsp851R51LCGTTTG71172All0.000001
ORF1ab/nsp851R51HcGtcAt935935All0.000179
ORF1ab/nsp851R51CCgtTgt739739B.1.36.10.842645
ORF1ab/nsp851R51LcGtcTt403403B.1.1770.005307
ORF1ab/nsp851R51CCgtTgt352352B.1.1.70.000315
ORF1ab/nsp851R51RcgTcgC298340All0.000057
ORF1ab/nsp851R51RCgTAgA19340All0.000004
ORF1ab/nsp851R51RcgTcgA8340All0.000002
ORF1ab/nsp851R51RCgTAgG8340All0.000002
ORF1ab/nsp851R51RcgTcgG7340All0.000001
ORF1ab/nsp851R51HcGtcAt277277AY.60.011393
ORF1ab/nsp851R51LcGtcTt248248B.1.20.002184
ORF1ab/nsp851R51CCgtTgt131131B.1.20.001154
ORF1ab/nsp851R51LcGtcTt125125B.1.160.110.714286
ORF1ab/nsp851R51CCgtTgt124124AY.40.000193
ORF1ab/nsp851R51CCgtTgt121121AY.1030.000751
ORF1ab/nsp851R51CCgtTgt114114B.1.5880.103731
ORF1ab/nsp851R51CCgtTgt100100B.10.000916
ORF1ab/nsp851R51HcGtcAt9090AY.40.00014
ORF1ab/nsp851R51HcGtcAt8585B.1.5930.923913
ORF1ab/nsp851R51CCgtTgt8484B.1.1770.001106
ORF1ab/nsp851R51LcGtcTt3572B.1.1.70.000031
ORF1ab/nsp851R51LCGTTTA3072B.1.1.70.000027
ORF1ab/nsp851R51LCGTTTG772B.1.1.70.000006
ORF1ab/nsp851R51GCgtGgt3269All0.000006
ORF1ab/nsp851R51GCgTGgA2469All0.000005
ORF1ab/nsp851R51GCgTGgG1369All0.000002
ORF1ab/nsp851R51RcgTcgC3767B.1.1.70.000033
ORF1ab/nsp851R51RCgTAgA1667B.1.1.70.000014
ORF1ab/nsp851R51RCgTAgG767B.1.1.70.000006
ORF1ab/nsp851R51RcgTcgA467B.1.1.70.000004
ORF1ab/nsp851R51RcgTcgG367B.1.1.70.000003
ORF1ab/nsp851R51GCgtGgt2763B.1.1.70.000024
ORF1ab/nsp851R51GCgTGgA2463B.1.1.70.000021
ORF1ab/nsp851R51GCgTGgG1263B.1.1.70.000011
ORF1ab/nsp851R51CCgtTgt6262AY.420.002494
ORF1ab/nsp851R51XCgTTgA3259All0.000006
ORF1ab/nsp851R51XCGTTAA2159All0.000004
ORF1ab/nsp851R51XCGTTAG659All0.000001
ORF1ab/nsp851R51HcGtcAt5858AY.250.000349
ORF1ab/nsp851R51XCgTTgA3157B.1.1.70.000028
ORF1ab/nsp851R51XCGTTAA2057B.1.1.70.000018
ORF1ab/nsp851R51XCGTTAG657B.1.1.70.000005
ORF1ab/nsp851R51CCgtTgt5555B.1.10.000998
ORF1ab/nsp851R51HcGtcAt5353B.1.1.70.000047
ORF1ab/nsp851R51VCGTGTA2351All0.000004
ORF1ab/nsp851R51VCGtGTt2251All0.000004
ORF1ab/nsp851R51VCGTGTG651All0.000001
ORF1ab/nsp851R51CCgtTgt4848AY.290.000757
ORF1ab/nsp851R51VCGTGTA2147B.1.1.70.000019
ORF1ab/nsp851R51VCGtGTt2047B.1.1.70.000018
ORF1ab/nsp851R51VCGTGTG647B.1.1.70.000005
ORF1ab/nsp851R51CCgtTgt4040B.1.177.40.008442
ORF1ab/nsp851R51LcGtcTt3838B.1.10.000689
ORF1ab/nsp851R51CCgtTgt3737B.1.5270.137037
ORF1ab/nsp851R51SCgtAgt3436All0.000007
ORF1ab/nsp851R51SCGtTCt136All0
ORF1ab/nsp851R51SCGTTCA136All0
ORF1ab/nsp851R51ICGTATA1734All0.000003
ORF1ab/nsp851R51ICGtATt1734All0.000003
ORF1ab/nsp851R51CCgtTgt3434B.1.5170.014518
ORF1ab/nsp851R51FCGtTTt3232All0.000006
ORF1ab/nsp851R51ICGtATt1530B.1.1.70.000013
ORF1ab/nsp851R51ICGTATA1530B.1.1.70.000013
ORF1ab/nsp851R51FCGtTTt2929B.1.1.70.000026
ORF1ab/nsp851R51HcGtcAt2828B.1.1770.000369
ORF1ab/nsp851R51RcgTcgC2727AY.440.000164
ORF1ab/nsp851R51CCgtTgt2727B.1.1.5180.170886
ORF1ab/nsp851R51CCgtTgt2626B.1.617.20.000098
ORF1ab/nsp851R51HcGtcAt2525B.10.000229
ORF1ab/nsp851R51LcGtcTt2425B.10.00022
ORF1ab/nsp851R51LCGTTTA125B.10.000009
ORF1ab/nsp851R51CCgtTgt2424B.1.177.210.001835
ORF1ab/nsp851R51HcGtcAt2222B.1.20.000194
ORF1ab/nsp851R51HcGtcAt2222B.1.617.20.000083
ORF1ab/nsp851R51YCGtTAt2121All0.000004
ORF1ab/nsp851R51CCgtTgt2121AY.430.000093
ORF1ab/nsp851R51RcgTcgC2021B.1.1770.000263
ORF1ab/nsp851R51RcgTcgA121B.1.1770.000013
ORF1ab/nsp851R51CCgtTgt2121B.1.2340.002771
ORF1ab/nsp851R51ECGTGAA1420All0.000003
ORF1ab/nsp851R51ECGTGAG620All0.000001
ORF1ab/nsp851R51HcGtcAt2020AY.30.000199
ORF1ab/nsp851R51CCgtTgt2020AY.440.000122
ORF1ab/nsp851R51YCGtTAt2020B.1.1.70.000018
ORF1ab/nsp851R51CCgtTgt2020B.1.4290.000471
ORF1ab/nsp851R51LcGtcTt2020B.1.5600.092593
ORF1ab/nsp851R51RcgTcgC1919AY.260.000538
ORF1ab/nsp851R51HcGtcAt1919AY.440.000116
ORF1ab/nsp851R51ECGTGAA1319B.1.1.70.000012
ORF1ab/nsp851R51ECGTGAG619B.1.1.70.000005
ORF1ab/nsp851R51LcGtcTt1919B.1.3460.024902
ORF1ab/nsp851R51LcGtcTt1819B.1.5760.016319
ORF1ab/nsp851R51LCGTTTA119B.1.5760.000907
ORF1ab/nsp851R51KCGTAAA1518All0.000003
ORF1ab/nsp851R51KCGTAAG318All0.000001
ORF1ab/nsp851R51CCgtTgt1818AY.250.000108
ORF1ab/nsp851R51CCgtTgt1818AY.30.000179
ORF1ab/nsp851R51SCgtAgt1818B.1.1.70.000016
ORF1ab/nsp851R51LcGtcTt1818B.1.4290.000424
ORF1ab/nsp851R51NCGtAAt1717All0.000003
ORF1ab/nsp851R51KCGTAAA1417B.1.1.70.000013
ORF1ab/nsp851R51KCGTAAG317B.1.1.70.000003
ORF1ab/nsp851R51LcGtcTt1717B.1.617.20.000064
ORF1ab/nsp851R51HcGtcAt1616AY.630.00619
ORF1ab/nsp851R51HcGtcAt1616B.1.10.00029
ORF1ab/nsp851R51HcGtcAt1616B.1.1.2260.093023
ORF1ab/nsp851R51DCGtGAt1515All0.000003
ORF1ab/nsp851R51LcGtcTt1515B.1.36.210.032397
ORF1ab/nsp851R51RcgTcgC1414AY.40.000022
ORF1ab/nsp851R51HcGtcAt1414B.1.1.3060.006138
ORF1ab/nsp851R51NCGtAAt1414B.1.1.70.000013
ORF1ab/nsp851R51RcgTcgC1313AY.30.000129
ORF1ab/nsp851R51DCGtGAt1313B.1.1.70.000012
ORF1ab/nsp851R51delCGT---1212All0.000002
ORF1ab/nsp851R51CCgtTgt1212AY.390.000297
ORF1ab/nsp851R51CCgtTgt1212B.1.1.5190.000477
ORF1ab/nsp851R51CCgtTgt1212B.1.4740.022814
ORF1ab/nsp851R51LcGtcTt1212B.1.5650.009724
ORF1ab/nsp851R51CCgtTgt1212B.1.5950.003132
ORF1ab/nsp851R51RcgTcgC1012P.10.000158
ORF1ab/nsp851R51RcgTcgA112P.10.000016
ORF1ab/nsp851R51RCgTAgA112P.10.000016
ORF1ab/nsp851R51RcgTcgC1212Q.30.00174
ORF1ab/nsp851R51HcGtcAt1111AD.20.002409
ORF1ab/nsp851R51WCgTTgG1111All0.000002
ORF1ab/nsp851R51HcGtcAt1111AY.1030.000068
ORF1ab/nsp851R51CCgtTgt1111B.1.1.330.00463
ORF1ab/nsp851R51WCgTTgG1111B.1.1.70.00001
ORF1ab/nsp851R51RcgTcgC1010AY.430.000044
ORF1ab/nsp851R51CCgtTgt1010B.1.1600.000312
ORF1ab/nsp851R51RcgTcgC89AY.250.000048
ORF1ab/nsp851R51RCgTAgA19AY.250.000006
ORF1ab/nsp851R51LcGtcTt99AY.430.00004
ORF1ab/nsp851R51HcGtcAt99AY.430.00004
ORF1ab/nsp851R51RcgTcgC99B.1.177.810.001704
ORF1ab/nsp851R51LcGtcTt99B.1.177.830.013333
ORF1ab/nsp851R51LcGtcTt99B.1.177.90.011984
ORF1ab/nsp851R51RcgTcgC99B.1.2210.000639
ORF1ab/nsp851R51HcGtcAt99B.1.4270.000454
ORF1ab/nsp851R51RcgTcgC78B.10.000064
ORF1ab/nsp851R51RcgTcgG18B.10.000009
ORF1ab/nsp851R51RcgTcgC68B.1.10.000109
ORF1ab/nsp851R51RcgTcgG18B.1.10.000018
ORF1ab/nsp851R51RCgTAgG18B.1.10.000018
ORF1ab/nsp851R51CCgtTgt88B.1.1.3170.003294
ORF1ab/nsp851R51CCgtTgt88B.1.6090.003835
ORF1ab/nsp851R51CCgtTgt88P.10.000126
ORF1ab/nsp851R51QcGTcAA57All0.000001
ORF1ab/nsp851R51QcGTcAG27All0
ORF1ab/nsp851R51HcGtcAt77AY.1110.001282
ORF1ab/nsp851R51HcGtcAt77AY.39.10.000277
ORF1ab/nsp851R51RcgTcgC77AY.470.000218
ORF1ab/nsp851R51CCgtTgt77B.1.1.370.00135
ORF1ab/nsp851R51LcGtcTt77B.1.1600.000218
ORF1ab/nsp851R51LcGtcTt77B.1.2410.005682
ORF1ab/nsp851R51LcGtcTt77B.1.360.001021
ORF1ab/nsp851R51CCgtTgt77B.1.360.001021
ORF1ab/nsp851R51RcgTcgC77B.1.617.20.000026
ORF1ab/nsp851R51CCgtTgt77B.550.020649
ORF1ab/nsp851R51HcGtcAt66AY.200.000233
ORF1ab/nsp851R51LcGtcTt66B0.000767
ORF1ab/nsp851R51HcGtcAt66B.1.1.10.00196
ORF1ab/nsp851R51HcGtcAt66B.1.1.5190.000238
ORF1ab/nsp851R51QcGTcAA46B.1.1.70.000004
ORF1ab/nsp851R51QcGTcAG26B.1.1.70.000002
ORF1ab/nsp851R51LcGtcTt66B.1.1110.007051
ORF1ab/nsp851R51LcGtcTt66B.1.1950.030151
ORF1ab/nsp851R51RcgTcgC66B.1.4290.000141
ORF1ab/nsp851R51HcGtcAt66B.1.4290.000141
ORF1ab/nsp851R51MCGTATG55All0.000001
ORF1ab/nsp851R51RcgTcgC55AY.1090.003698
ORF1ab/nsp851R51CCgtTgt55AY.200.000194
ORF1ab/nsp851R51RcgTcgC55AY.750.00028
ORF1ab/nsp851R51SCgtAgt35B.10.000027
ORF1ab/nsp851R51SCGtTCt15B.10.000009
ORF1ab/nsp851R51SCGTTCA15B.10.000009
ORF1ab/nsp851R51HcGtcAt55B.1.1.1700.006234
ORF1ab/nsp851R51RcgTcgC55B.1.1.5190.000199
ORF1ab/nsp851R51MCGTATG55B.1.1.70.000004
ORF1ab/nsp851R51RcgTcgC55B.1.20.000044
ORF1ab/nsp851R51CCgtTgt55B.1.2400.001078
ORF1ab/nsp851R51CCgtTgt55B.1.2430.000348
ORF1ab/nsp851R51CCgtTgt55B.1.4270.000252
ORF1ab/nsp851R51CCgtTgt44AD.20.000876
ORF1ab/nsp851R51del1cGtc-t44All0.000001
ORF1ab/nsp851R51RcgTcgC44AY.1030.000025
ORF1ab/nsp851R51HcGtcAt44AY.290.000063
ORF1ab/nsp851R51LcGtcTt44AY.40.000006
ORF1ab/nsp851R51CCgtTgt44AY.46.60.000289
ORF1ab/nsp851R51RcgTcgC44AY.90.00027
ORF1ab/nsp851R51LcGtcTt44B.1.1.2070.004728
ORF1ab/nsp851R51LcGtcTt44B.1.1.2160.003562
ORF1ab/nsp851R51LcGtcTt44B.1.177.70.000659
ORF1ab/nsp851R51CCgtTgt44B.1.4780.047059
ORF1ab/nsp851R51CCgtTgt44C.40.04
ORF1ab/nsp851R51LcGtcTt33A.20.001985
ORF1ab/nsp851R51PcGtcCt23All0
ORF1ab/nsp851R51PcGTcCG13All0
ORF1ab/nsp851R51CCgtTgt33AY.1000.000138
ORF1ab/nsp851R51CCgtTgt33AY.1020.00008
ORF1ab/nsp851R51CCgtTgt33AY.1080.003308
ORF1ab/nsp851R51HcGtcAt33AY.1180.000188
ORF1ab/nsp851R51HcGtcAt33AY.230.000209
ORF1ab/nsp851R51HcGtcAt33AY.260.000085
ORF1ab/nsp851R51CCgtTgt33AY.3.10.000256
ORF1ab/nsp851R51CCgtTgt33AY.39.10.000119
ORF1ab/nsp851R51CCgtTgt33AY.4.50.000322
ORF1ab/nsp851R51HcGtcAt33AY.420.000121
ORF1ab/nsp851R51CCgtTgt33AY.50.000062
ORF1ab/nsp851R51CCgtTgt33AY.510.002727
ORF1ab/nsp851R51CCgtTgt33AY.530.000863
ORF1ab/nsp851R51LcGtcTt33AY.90.000203
ORF1ab/nsp851R51LcGtcTt33AY.9.20.00011
ORF1ab/nsp851R51HcGtcAt33AY.9.20.00011
ORF1ab/nsp851R51CCgtTgt33B.1.1.1570.00274
ORF1ab/nsp851R51CCgtTgt33B.1.1.2790.003363
ORF1ab/nsp851R51CCgtTgt33B.1.1.280.000934
ORF1ab/nsp851R51CCgtTgt33B.1.1.3060.001315
ORF1ab/nsp851R51CCgtTgt33B.1.2390.003663
ORF1ab/nsp851R51CCgtTgt33B.1.2580.0002
ORF1ab/nsp851R51CCgtTgt33B.1.258.190.021277
ORF1ab/nsp851R51LcGtcTt33B.1.2650.003812
ORF1ab/nsp851R51HcGtcAt33B.1.3110.000824
ORF1ab/nsp851R51CCgtTgt33B.1.3510.000089
ORF1ab/nsp851R51CCgtTgt33B.1.36.390.006652
ORF1ab/nsp851R51CCgtTgt33B.1.5760.00272
ORF1ab/nsp851R51LcGtcTt33B.1.5960.000261
ORF1ab/nsp851R51RcgTcgC33B.1.6370.000219
ORF1ab/nsp851R51CCgtTgt22A.210.00554
ORF1ab/nsp851R51CCgtTgt22AE.80.000978
ORF1ab/nsp851R51ACGtGCt12All0
ORF1ab/nsp851R51ACGTGCA12All0
ORF1ab/nsp851R51TCGtACt12All0
ORF1ab/nsp851R51TCGTACA12All0
ORF1ab/nsp851R51HcGtcAt22AY.1020.000053
ORF1ab/nsp851R51RcgTcgC22AY.1140.000462
ORF1ab/nsp851R51CCgtTgt22AY.1190.000071
ORF1ab/nsp851R51RcgTcgC22AY.1190.000071
ORF1ab/nsp851R51HcGtcAt22AY.240.000862
ORF1ab/nsp851R51ICGTATA12AY.250.000006
ORF1ab/nsp851R51ICGtATt12AY.250.000006
ORF1ab/nsp851R51LCGTTTA12AY.250.000006
ORF1ab/nsp851R51LcGtcTt12AY.250.000006
ORF1ab/nsp851R51LcGtcTt22AY.290.000032
ORF1ab/nsp851R51LcGtcTt22AY.30.00002
ORF1ab/nsp851R51CCgtTgt22AY.300.000791
ORF1ab/nsp851R51CCgtTgt22AY.320.001065
ORF1ab/nsp851R51delCGT---22AY.350.000466
ORF1ab/nsp851R51HcGtcAt22AY.390.000049
ORF1ab/nsp851R51CCgtTgt22AY.4.20.000043
ORF1ab/nsp851R51CCgtTgt22AY.460.000208
ORF1ab/nsp851R51HcGtcAt22AY.470.000062
ORF1ab/nsp851R51LcGtcTt22AY.470.000062
ORF1ab/nsp851R51HcGtcAt22AY.50.000041
ORF1ab/nsp851R51RcgTcgC22AY.50.000041
ORF1ab/nsp851R51CCgtTgt22AY.550.001835
ORF1ab/nsp851R51CCgtTgt22AY.60.000082
ORF1ab/nsp851R51CCgtTgt22AY.620.000871
ORF1ab/nsp851R51HcGtcAt22AY.7.10.000225
ORF1ab/nsp851R51CCgtTgt22AY.850.000854
ORF1ab/nsp851R51HcGtcAt22AY.98.10.000097
ORF1ab/nsp851R51HcGtcAt22AY.99.10.003106
ORF1ab/nsp851R51RcgTcgC22B0.000256
ORF1ab/nsp851R51delCGT---22B.10.000018
ORF1ab/nsp851R51TCGtACt12B.10.000009
ORF1ab/nsp851R51ACGtGCt12B.10.000009
ORF1ab/nsp851R51ICGtATt12B.10.000009
ORF1ab/nsp851R51ICGTATA12B.10.000009
ORF1ab/nsp851R51VCGtGTt12B.10.000009
ORF1ab/nsp851R51VCGTGTA12B.10.000009
ORF1ab/nsp851R51TCGTACA12B.10.000009
ORF1ab/nsp851R51ACGTGCA12B.10.000009
ORF1ab/nsp851R51SCgtAgt22B.1.10.000036
ORF1ab/nsp851R51GCgtGgt12B.1.10.000018
ORF1ab/nsp851R51GCgTGgG12B.1.10.000018
ORF1ab/nsp851R51CCgtTgt22B.1.1.1450.074074
ORF1ab/nsp851R51CCgtTgt22B.1.1.1890.003026
ORF1ab/nsp851R51CCgtTgt22B.1.1.2140.000111
ORF1ab/nsp851R51CCgtTgt22B.1.1.2220.000408
ORF1ab/nsp851R51CCgtTgt22B.1.1.30.017391
ORF1ab/nsp851R51del1cGtc-t22B.1.1.3060.000877
ORF1ab/nsp851R51HcGtcAt22B.1.1.3690.000892
ORF1ab/nsp851R51CCgtTgt22B.1.1.3890.012121
ORF1ab/nsp851R51HcGtcAt22B.1.1.3960.090909
ORF1ab/nsp851R51LcGtcTt22B.1.1.5190.000079
ORF1ab/nsp851R51HcGtcAt22B.1.177.160.001329
ORF1ab/nsp851R51RcgTcgC22B.1.177.170.001642
ORF1ab/nsp851R51RcgTcgC22B.1.177.40.000422
ORF1ab/nsp851R51CCgtTgt22B.1.177.540.001213
ORF1ab/nsp851R51HcGtcAt22B.1.177.570.000562
ORF1ab/nsp851R51RcgTcgC22B.1.177.600.000437
ORF1ab/nsp851R51HcGtcAt22B.1.177.860.000367
ORF1ab/nsp851R51CCgtTgt22B.1.177.870.001456
ORF1ab/nsp851R51CCgtTgt22B.1.2210.000142
ORF1ab/nsp851R51CCgtTgt22B.1.2600.006689
ORF1ab/nsp851R51RcgTcgC22B.1.3510.000059
ORF1ab/nsp851R51CCgtTgt22B.1.3610.002577
ORF1ab/nsp851R51LcGtcTt22B.1.3710.002245
ORF1ab/nsp851R51PcGtcCt12B.1.3910.001127
ORF1ab/nsp851R51PcGTcCG12B.1.3910.001127
ORF1ab/nsp851R51LcGtcTt22B.1.438.10.000215
ORF1ab/nsp851R51HcGtcAt22B.1.5090.001732
ORF1ab/nsp851R51HcGtcAt22B.1.5380.016129
ORF1ab/nsp851R51VCGtGTt12B.1.5760.000907
ORF1ab/nsp851R51VCGTGTA12B.1.5760.000907
ORF1ab/nsp851R51CCgtTgt22B.1.5960.000174
ORF1ab/nsp851R51delCGT---22B.1.617.20.000008
ORF1ab/nsp851R51CCgtTgt22B.60.00182
ORF1ab/nsp851R51CCgtTgt22C.160.002121
ORF1ab/nsp851R51RCgTAgA12P.1.10.000318
ORF1ab/nsp851R51RcgTcgA12P.1.10.000318
ORF1ab/nsp851R51SCgtAgt110.055556
ORF1ab/nsp851R51GCgtGgt110.055556
ORF1ab/nsp851R51NCGtAAt110.055556
ORF1ab/nsp851R51DCGtGAt110.055556
ORF1ab/nsp851R51HcGtcAt110.055556
ORF1ab/nsp851R51CCgtTgt11A.20.000662
ORF1ab/nsp851R51RcgTcgC11A.20.000662
ORF1ab/nsp851R51RcgTcgC11A.2.50.000499
ORF1ab/nsp851R51HcGtcAt11A.2.5.20.001572
ORF1ab/nsp851R51RcgTcgC11A.2.5.20.001572
ORF1ab/nsp851R51RcgTcgC11A.250.018182
ORF1ab/nsp851R51SCgtAgt11AU.10.001266
ORF1ab/nsp851R51CCgtTgt11AY.10.000396
ORF1ab/nsp851R51HcGtcAt11AY.1000.000046
ORF1ab/nsp851R51RcgTcgC11AY.1000.000046
ORF1ab/nsp851R51LcGtcTt11AY.1030.000006
ORF1ab/nsp851R51HcGtcAt11AY.1080.001103
ORF1ab/nsp851R51RcgTcgC11AY.1080.001103
ORF1ab/nsp851R51CCgtTgt11AY.1110.000183
ORF1ab/nsp851R51CCgtTgt11AY.1130.000142
ORF1ab/nsp851R51HcGtcAt11AY.1130.000142
ORF1ab/nsp851R51CCgtTgt11AY.1140.000231
ORF1ab/nsp851R51HcGtcAt11AY.1170.000085
ORF1ab/nsp851R51HcGtcAt11AY.1190.000035
ORF1ab/nsp851R51LcGtcTt11AY.1190.000035
ORF1ab/nsp851R51CCgtTgt11AY.1200.000037
ORF1ab/nsp851R51RcgTcgC11AY.1200.000037
ORF1ab/nsp851R51LcGtcTt11AY.120.10.000321
ORF1ab/nsp851R51CCgtTgt11AY.160.00038
ORF1ab/nsp851R51RcgTcgG11AY.20.000356
ORF1ab/nsp851R51RcgTcgC11AY.200.000039
ORF1ab/nsp851R51GCgtGgt11AY.200.000039
ORF1ab/nsp851R51delCGT---11AY.230.00007
ORF1ab/nsp851R51CCgtTgt11AY.230.00007
ORF1ab/nsp851R51XCgTTgA11AY.250.000006
ORF1ab/nsp851R51delCGT---11AY.250.000006
ORF1ab/nsp851R51SCgtAgt11AY.250.000006
ORF1ab/nsp851R51FCGtTTt11AY.250.000006
ORF1ab/nsp851R51CCgtTgt11AY.260.000028
ORF1ab/nsp851R51LcGtcTt11AY.270.000065
ORF1ab/nsp851R51HcGtcAt11AY.300.000396
ORF1ab/nsp851R51HcGtcAt11AY.330.000067
ORF1ab/nsp851R51RcgTcgC11AY.360.000148
ORF1ab/nsp851R51CCgtTgt11AY.360.000148
ORF1ab/nsp851R51HcGtcAt11AY.370.000316
ORF1ab/nsp851R51RcgTcgC11AY.390.000025
ORF1ab/nsp851R51SCgtAgt11AY.40.000002
ORF1ab/nsp851R51GCgtGgt11AY.40.000002
ORF1ab/nsp851R51HcGtcAt11AY.4.20.000022
ORF1ab/nsp851R51LcGtcTt11AY.4.20.000022
ORF1ab/nsp851R51CCgtTgt11AY.4.2.10.000149
ORF1ab/nsp851R51LcGtcTt11AY.420.00004
ORF1ab/nsp851R51CCgtTgt11AY.450.000122
ORF1ab/nsp851R51CCgtTgt11AY.46.20.000635
ORF1ab/nsp851R51CCgtTgt11AY.46.40.000165
ORF1ab/nsp851R51HcGtcAt11AY.46.40.000165
ORF1ab/nsp851R51CCgtTgt11AY.470.000031
ORF1ab/nsp851R51CCgtTgt11AY.5.30.000337
ORF1ab/nsp851R51HcGtcAt11AY.5.30.000337
ORF1ab/nsp851R51HcGtcAt11AY.540.000095
ORF1ab/nsp851R51RcgTcgC11AY.60.000041
ORF1ab/nsp851R51HcGtcAt11AY.610.000105
ORF1ab/nsp851R51CCgtTgt11AY.610.000105
ORF1ab/nsp851R51RcgTcgC11AY.610.000105
ORF1ab/nsp851R51HcGtcAt11AY.670.000464
ORF1ab/nsp851R51CCgtTgt11AY.690.000187
ORF1ab/nsp851R51RcgTcgC11AY.710.000475
ORF1ab/nsp851R51HcGtcAt11AY.740.000116
ORF1ab/nsp851R51HcGtcAt11AY.750.000056
ORF1ab/nsp851R51CCgtTgt11AY.750.000056
ORF1ab/nsp851R51delCGT---11AY.75.10.00018
ORF1ab/nsp851R51CCgtTgt11AY.790.001211
ORF1ab/nsp851R51NCGtAAt11AY.790.001211
ORF1ab/nsp851R51HcGtcAt11AY.840.000437
ORF1ab/nsp851R51CCgtTgt11AY.90.000068
ORF1ab/nsp851R51CCgtTgt11AY.980.000079
ORF1ab/nsp851R51SCgtAgt11AY.98.10.000048
ORF1ab/nsp851R51CCgtTgt11AY.98.10.000048
ORF1ab/nsp851R51SCgtAgt11AY.99.20.000092
ORF1ab/nsp851R51CCgtTgt11AY.99.20.000092
ORF1ab/nsp851R51LcGtcTt11AY.99.20.000092
ORF1ab/nsp851R51GCgtGgt11B.10.000009
ORF1ab/nsp851R51FCGtTTt11B.10.000009
ORF1ab/nsp851R51delCGT---11B.1.10.000018
ORF1ab/nsp851R51CCgtTgt11B.1.1.10.000327
ORF1ab/nsp851R51HcGtcAt11B.1.1.100.001115
ORF1ab/nsp851R51CCgtTgt11B.1.1.130.035714
ORF1ab/nsp851R51CCgtTgt11B.1.1.1480.008772
ORF1ab/nsp851R51HcGtcAt11B.1.1.1610.003534
ORF1ab/nsp851R51CCgtTgt11B.1.1.1700.001247
ORF1ab/nsp851R51CCgtTgt11B.1.1.1760.000439
ORF1ab/nsp851R51CCgtTgt11B.1.1.1800.010753
ORF1ab/nsp851R51CCgtTgt11B.1.1.2210.010101
ORF1ab/nsp851R51LcGtcTt11B.1.1.250.000569
ORF1ab/nsp851R51HcGtcAt11B.1.1.250.000569
ORF1ab/nsp851R51CCgtTgt11B.1.1.2770.000759
ORF1ab/nsp851R51LcGtcTt11B.1.1.280.000311
ORF1ab/nsp851R51HcGtcAt11B.1.1.280.000311
ORF1ab/nsp851R51CCgtTgt11B.1.1.2880.001916
ORF1ab/nsp851R51CCgtTgt11B.1.1.3050.003861
ORF1ab/nsp851R51LcGtcTt11B.1.1.3110.000358
ORF1ab/nsp851R51CCgtTgt11B.1.1.3110.000358
ORF1ab/nsp851R51CCgtTgt11B.1.1.3160.000925
ORF1ab/nsp851R51LcGtcTt11B.1.1.3160.000925
ORF1ab/nsp851R51RcgTcgC11B.1.1.3480.000796
ORF1ab/nsp851R51HcGtcAt11B.1.1.370.000193
ORF1ab/nsp851R51RcgTcgC11B.1.1.3720.000689
ORF1ab/nsp851R51CCgtTgt11B.1.1.3970.002252
ORF1ab/nsp851R51HcGtcAt11B.1.1.4090.002833
ORF1ab/nsp851R51RcgTcgC11B.1.1.4340.000349
ORF1ab/nsp851R51LcGtcTt11B.1.1.440.00241
ORF1ab/nsp851R51RcgTcgC11B.1.1.4530.008475
ORF1ab/nsp851R51LcGtcTt11B.1.1.4860.001577
ORF1ab/nsp851R51RcgTcgC11B.1.1.500.000679
ORF1ab/nsp851R51HcGtcAt11B.1.1.550.012987
ORF1ab/nsp851R51PcGtcCt11B.1.1.70.000001
ORF1ab/nsp851R51CCgtTgt11B.1.1.700.000341
ORF1ab/nsp851R51LcGtcTt11B.1.1390.000733
ORF1ab/nsp851R51CCgtTgt11B.1.1460.004237
ORF1ab/nsp851R51HcGtcAt11B.1.1600.000031
ORF1ab/nsp851R51HcGtcAt11B.1.160.170.001701
ORF1ab/nsp851R51CCgtTgt11B.1.160.170.001701
ORF1ab/nsp851R51CCgtTgt11B.1.160.320.004292
ORF1ab/nsp851R51HcGtcAt11B.1.177.40.000211
ORF1ab/nsp851R51CCgtTgt11B.1.177.400.005155
ORF1ab/nsp851R51CCgtTgt11B.1.177.430.001477
ORF1ab/nsp851R51LcGtcTt11B.1.177.550.002331
ORF1ab/nsp851R51LcGtcTt11B.1.177.560.000668
ORF1ab/nsp851R51RcgTcgC11B.1.177.560.000668
ORF1ab/nsp851R51CCgtTgt11B.1.177.570.000281
ORF1ab/nsp851R51CCgtTgt11B.1.177.580.001332
ORF1ab/nsp851R51LcGtcTt11B.1.177.650.000665
ORF1ab/nsp851R51LcGtcTt11B.1.177.730.000566
ORF1ab/nsp851R51LcGtcTt11B.1.177.80.000752
ORF1ab/nsp851R51CCgtTgt11B.1.177.80.000752
ORF1ab/nsp851R51CCgtTgt11B.1.177.860.000183
ORF1ab/nsp851R51LcGtcTt11B.1.177.870.000728
ORF1ab/nsp851R51SCgtAgt11B.1.20.000009
ORF1ab/nsp851R51del1cGtc-t11B.1.20.000009
ORF1ab/nsp851R51CCgtTgt11B.1.2060.000816
ORF1ab/nsp851R51LcGtcTt11B.1.2210.000071
ORF1ab/nsp851R51CCgtTgt11B.1.2320.000537
ORF1ab/nsp851R51LcGtcTt11B.1.2360.002053
ORF1ab/nsp851R51LcGtcTt11B.1.2400.000216
ORF1ab/nsp851R51HcGtcAt11B.1.2430.00007
ORF1ab/nsp851R51HcGtcAt11B.1.2580.000067
ORF1ab/nsp851R51LcGtcTt11B.1.2580.000067
ORF1ab/nsp851R51RcgTcgA11B.1.258.110.000396
ORF1ab/nsp851R51RcgTcgC11B.1.258.140.00098
ORF1ab/nsp851R51CCgtTgt11B.1.258.170.000104
ORF1ab/nsp851R51HcGtcAt11B.1.258.170.000104
ORF1ab/nsp851R51LcGtcTt11B.1.2790.000514
ORF1ab/nsp851R51CCgtTgt11B.1.2790.000514
ORF1ab/nsp851R51SCgtAgt11B.1.3460.001311
ORF1ab/nsp851R51HcGtcAt11B.1.36.210.00216
ORF1ab/nsp851R51HcGtcAt11B.1.36.80.001
ORF1ab/nsp851R51SCgtAgt11B.1.3690.000285
ORF1ab/nsp851R51RcgTcgC11B.1.3750.00082
ORF1ab/nsp851R51CCgtTgt11B.1.3830.009009
ORF1ab/nsp851R51CCgtTgt11B.1.3910.001127
ORF1ab/nsp851R51RcgTcgG11B.1.3910.001127
ORF1ab/nsp851R51RcgTcgC11B.1.3980.002976
ORF1ab/nsp851R51CCgtTgt11B.1.3990.001934
ORF1ab/nsp851R51CCgtTgt11B.1.4330.003195
ORF1ab/nsp851R51CCgtTgt11B.1.4360.001029
ORF1ab/nsp851R51CCgtTgt11B.1.4520.013699
ORF1ab/nsp851R51RcgTcgC11B.1.466.20.000391
ORF1ab/nsp851R51CCgtTgt11B.1.5040.03125
ORF1ab/nsp851R51del1cGtc-t11B.1.5250.000113
ORF1ab/nsp851R51CCgtTgt11B.1.5250.000113
ORF1ab/nsp851R51CCgtTgt11B.1.5260.000024
ORF1ab/nsp851R51HcGtcAt11B.1.5490.007194
ORF1ab/nsp851R51CCgtTgt11B.1.5640.000426
ORF1ab/nsp851R51LcGtcTt11B.1.5640.000426
ORF1ab/nsp851R51CCgtTgt11B.1.5740.002151
ORF1ab/nsp851R51YCGtTAt11B.1.5760.000907
ORF1ab/nsp851R51DCGtGAt11B.1.5760.000907
ORF1ab/nsp851R51ECGTGAA11B.1.5760.000907
ORF1ab/nsp851R51FCGtTTt11B.1.5760.000907
ORF1ab/nsp851R51XCGTTAA11B.1.5760.000907
ORF1ab/nsp851R51CCgtTgt11B.1.5800.004065
ORF1ab/nsp851R51LcGtcTt11B.1.5950.000261
ORF1ab/nsp851R51HcGtcAt11B.1.5960.000087
ORF1ab/nsp851R51RcgTcgC11B.1.617.10.000129
ORF1ab/nsp851R51CCgtTgt11B.1.617.10.000129
ORF1ab/nsp851R51CCgtTgt11B.1.6180.004032
ORF1ab/nsp851R51LcGtcTt11B.1.6210.000089
ORF1ab/nsp851R51RcgTcgC11B.1.6210.000089
ORF1ab/nsp851R51HcGtcAt11B.1.621.10.000506
ORF1ab/nsp851R51RcgTcgC11B.1.6280.000352
ORF1ab/nsp851R51CCgtTgt11B.1.930.000934
ORF1ab/nsp851R51HcGtcAt11B.290.003509
ORF1ab/nsp851R51RcgTcgC11B.3.10.001658
ORF1ab/nsp851R51CCgtTgt11B.350.007812
ORF1ab/nsp851R51LcGtcTt11B.4.50.011905
ORF1ab/nsp851R51CCgtTgt11B.400.000364
ORF1ab/nsp851R51RcgTcgC11C.110.010638
ORF1ab/nsp851R51delCGT---11C.170.055556
ORF1ab/nsp851R51CCgtTgt11C.20.016129
ORF1ab/nsp851R51CCgtTgt11C.290.0625
ORF1ab/nsp851R51CCgtTgt11C.300.001727
ORF1ab/nsp851R51CCgtTgt11C.370.000116
ORF1ab/nsp851R51RcgTcgC11D.20.000075
ORF1ab/nsp851R51LcGtcTt11D.20.000075
ORF1ab/nsp851R51delCGT---11N.40.004255
ORF1ab/nsp851R51HcGtcAt11P.10.000016
ORF1ab/nsp851R51NCGtAAt11P.10.000016
ORF1ab/nsp851R51SCgtAgt11P.10.000016
ORF1ab/nsp851R51KCGTAAA11P.10.000016
ORF1ab/nsp851R51QcGTcAA11P.10.000016
ORF1ab/nsp851R51SCgtAgt11P.1.10.000318
ORF1ab/nsp851R51CCgtTgt11P.1.170.000162
ORF1ab/nsp851R51RcgTcgC11P.1.17.10.000875
ORF1ab/nsp851R51CCgtTgt11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.