CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 49

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp849F49FF3991FsynttTttC212212112236-12238
ORF1ab/nsp849F49LF3991LnonsynttTttA137630.45985412236-12238
ORF1ab/nsp849F49LF3991LnonsynTttCtt137430.31386912236-12238
ORF1ab/nsp849F49LF3991LnonsynttTttG137260.18978112236-12238
ORF1ab/nsp849F49LF3991LnonsynTtTCtG13730.021897812236-12238
ORF1ab/nsp849F49LF3991LnonsynTtTCtA13720.014598512236-12238
ORF1ab/nsp849F49VF3991VnonsynTttGtt90550.61111112236-12238
ORF1ab/nsp849F49VF3991VnonsynTtTGtG90200.22222212236-12238
ORF1ab/nsp849F49VF3991VnonsynTtTGtA90150.16666712236-12238
ORF1ab/nsp849F49IF3991InonsynTttAtt86570.66279112236-12238
ORF1ab/nsp849F49IF3991InonsynTtTAtA86270.31395312236-12238
ORF1ab/nsp849F49IF3991InonsynTtTAtC8620.023255812236-12238
ORF1ab/nsp849F49GF3991GnonsynTTtGGt60290.48333312236-12238
ORF1ab/nsp849F49GF3991GnonsynTTTGGG60180.312236-12238
ORF1ab/nsp849F49GF3991GnonsynTTTGGA60130.21666712236-12238
ORF1ab/nsp849F49XF3991XnonsyntTTtGA53260.49056612236-12238
ORF1ab/nsp849F49XF3991XnonsyntTTtAA53200.37735812236-12238
ORF1ab/nsp849F49XF3991XnonsyntTTtAG5370.13207512236-12238
ORF1ab/nsp849F49CF3991CnonsyntTttGt49480.97959212236-12238
ORF1ab/nsp849F49CF3991CnonsyntTTtGC4910.020408212236-12238
ORF1ab/nsp849F49YF3991YnonsyntTttAt43420.97674412236-12238
ORF1ab/nsp849F49YF3991YnonsyntTTtAC4310.023255812236-12238
ORF1ab/nsp849F49SF3991SnonsynTTtAGt39260.66666712236-12238
ORF1ab/nsp849F49SF3991SnonsyntTttCt39100.2564112236-12238
ORF1ab/nsp849F49SF3991SnonsyntTTtCG3910.02564112236-12238
ORF1ab/nsp849F49SF3991SnonsynTTTAGC3910.02564112236-12238
ORF1ab/nsp849F49SF3991SnonsyntTTtCA3910.02564112236-12238
ORF1ab/nsp849F49RF3991RnonsynTTTAGA38170.44736812236-12238
ORF1ab/nsp849F49RF3991RnonsynTTTAGG38120.31578912236-12238
ORF1ab/nsp849F49RF3991RnonsynTTtCGt3840.10526312236-12238
ORF1ab/nsp849F49RF3991RnonsynTTTCGG3830.078947412236-12238
ORF1ab/nsp849F49RF3991RnonsynTTTCGA3820.052631612236-12238
ORF1ab/nsp849F49NF3991NnonsynTTtAAt25240.9612236-12238
ORF1ab/nsp849F49NF3991NnonsynTTTAAC2510.0412236-12238
ORF1ab/nsp849F49DF3991DnonsynTTtGAt2323112236-12238
ORF1ab/nsp849F49WF3991WnonsyntTTtGG2323112236-12238
ORF1ab/nsp849F49KF3991KnonsynTTTAAA17140.82352912236-12238
ORF1ab/nsp849F49KF3991KnonsynTTTAAG1730.17647112236-12238
ORF1ab/nsp849F49EF3991EnonsynTTTGAA16110.687512236-12238
ORF1ab/nsp849F49EF3991EnonsynTTTGAG1650.312512236-12238
ORF1ab/nsp849F49MF3991MnonsynTtTAtG1313112236-12238
ORF1ab/nsp849F49delF3991deldelTTT---1212112236-12238
ORF1ab/nsp849F49del1F3991del1delTtt-tt750.71428612236-12238
ORF1ab/nsp849F49del1F3991del1delTTt-Nt720.28571412236-12238
ORF1ab/nsp849F49AF3991AnonsynTTtGCt420.512236-12238
ORF1ab/nsp849F49TF3991TnonsynTTtACt420.512236-12238
ORF1ab/nsp849F49TF3991TnonsynTTTACA410.2512236-12238
ORF1ab/nsp849F49TF3991TnonsynTTTACG410.2512236-12238
ORF1ab/nsp849F49AF3991AnonsynTTTGCA410.2512236-12238
ORF1ab/nsp849F49AF3991AnonsynTTTGCG410.2512236-12238
ORF1ab/nsp849F49HF3991HnonsynTTtCAt22112236-12238
ORF1ab/nsp849F49QF3991QnonsynTTTCAG210.512236-12238
ORF1ab/nsp849F49QF3991QnonsynTTTCAA210.512236-12238
ORF1ab/nsp849F49del2F3991del2deltTTt--11112236-12238

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp849F49FttTttC212212All0.000041
ORF1ab/nsp849F49LttTttA63137All0.000012
ORF1ab/nsp849F49LTttCtt43137All0.000008
ORF1ab/nsp849F49LttTttG26137All0.000005
ORF1ab/nsp849F49LTtTCtG3137All0.000001
ORF1ab/nsp849F49LTtTCtA2137All0
ORF1ab/nsp849F49FttTttC105105B.1.177.270.990566
ORF1ab/nsp849F49VTttGtt5590All0.000011
ORF1ab/nsp849F49VTtTGtG2090All0.000004
ORF1ab/nsp849F49VTtTGtA1590All0.000003
ORF1ab/nsp849F49ITttAtt5786All0.000011
ORF1ab/nsp849F49ITtTAtA2786All0.000005
ORF1ab/nsp849F49ITtTAtC286All0
ORF1ab/nsp849F49LttTttA2763B.1.1.70.000024
ORF1ab/nsp849F49LttTttG2363B.1.1.70.000021
ORF1ab/nsp849F49LTttCtt1063B.1.1.70.000009
ORF1ab/nsp849F49LTtTCtG263B.1.1.70.000002
ORF1ab/nsp849F49LTtTCtA163B.1.1.70.000001
ORF1ab/nsp849F49GTTtGGt2960All0.000006
ORF1ab/nsp849F49GTTTGGG1860All0.000003
ORF1ab/nsp849F49GTTTGGA1360All0.000002
ORF1ab/nsp849F49ITttAtt3154B.1.1.70.000028
ORF1ab/nsp849F49ITtTAtA2254B.1.1.70.00002
ORF1ab/nsp849F49ITtTAtC154B.1.1.70.000001
ORF1ab/nsp849F49XtTTtGA2653All0.000005
ORF1ab/nsp849F49XtTTtAA2053All0.000004
ORF1ab/nsp849F49XtTTtAG753All0.000001
ORF1ab/nsp849F49VTttGtt2450B.1.1.70.000021
ORF1ab/nsp849F49VTtTGtG1850B.1.1.70.000016
ORF1ab/nsp849F49VTtTGtA850B.1.1.70.000007
ORF1ab/nsp849F49CtTttGt4849All0.000009
ORF1ab/nsp849F49CtTTtGC149All0
ORF1ab/nsp849F49GTTtGGt2145B.1.1.70.000019
ORF1ab/nsp849F49GTTTGGG1745B.1.1.70.000015
ORF1ab/nsp849F49GTTTGGA745B.1.1.70.000006
ORF1ab/nsp849F49YtTttAt4243All0.000008
ORF1ab/nsp849F49YtTTtAC143All0
ORF1ab/nsp849F49STTtAGt2639All0.000005
ORF1ab/nsp849F49StTttCt1039All0.000002
ORF1ab/nsp849F49StTTtCG139All0
ORF1ab/nsp849F49StTTtCA139All0
ORF1ab/nsp849F49STTTAGC139All0
ORF1ab/nsp849F49XtTTtGA2039B.1.1.70.000018
ORF1ab/nsp849F49XtTTtAA1439B.1.1.70.000013
ORF1ab/nsp849F49XtTTtAG539B.1.1.70.000004
ORF1ab/nsp849F49RTTTAGA1738All0.000003
ORF1ab/nsp849F49RTTTAGG1238All0.000002
ORF1ab/nsp849F49RTTtCGt438All0.000001
ORF1ab/nsp849F49RTTTCGG338All0.000001
ORF1ab/nsp849F49RTTTCGA238All0
ORF1ab/nsp849F49CtTttGt3637B.1.1.70.000032
ORF1ab/nsp849F49CtTTtGC137B.1.1.70.000001
ORF1ab/nsp849F49RTTTAGA1531B.1.1.70.000013
ORF1ab/nsp849F49RTTTAGG1131B.1.1.70.00001
ORF1ab/nsp849F49RTTtCGt231B.1.1.70.000002
ORF1ab/nsp849F49RTTTCGG231B.1.1.70.000002
ORF1ab/nsp849F49RTTTCGA131B.1.1.70.000001
ORF1ab/nsp849F49STTtAGt2228B.1.1.70.00002
ORF1ab/nsp849F49StTttCt328B.1.1.70.000003
ORF1ab/nsp849F49STTTAGC128B.1.1.70.000001
ORF1ab/nsp849F49StTTtCA128B.1.1.70.000001
ORF1ab/nsp849F49StTTtCG128B.1.1.70.000001
ORF1ab/nsp849F49FttTttC2626B.1.1.70.000023
ORF1ab/nsp849F49NTTtAAt2425All0.000005
ORF1ab/nsp849F49NTTTAAC125All0
ORF1ab/nsp849F49DTTtGAt2323All0.000004
ORF1ab/nsp849F49WtTTtGG2323All0.000004
ORF1ab/nsp849F49WtTTtGG2121B.1.1.70.000019
ORF1ab/nsp849F49VTttGtt1519B.10.000137
ORF1ab/nsp849F49VTtTGtA319B.10.000027
ORF1ab/nsp849F49VTtTGtG119B.10.000009
ORF1ab/nsp849F49YtTttAt1818B.1.1.70.000016
ORF1ab/nsp849F49KTTTAAA1417All0.000003
ORF1ab/nsp849F49KTTTAAG317All0.000001
ORF1ab/nsp849F49ETTTGAA1116All0.000002
ORF1ab/nsp849F49ETTTGAG516All0.000001
ORF1ab/nsp849F49YtTttAt1516B.10.000137
ORF1ab/nsp849F49YtTTtAC116B.10.000009
ORF1ab/nsp849F49LttTttA1515B.1.4970.004721
ORF1ab/nsp849F49ITttAtt1014B.10.000092
ORF1ab/nsp849F49ITtTAtA314B.10.000027
ORF1ab/nsp849F49ITtTAtC114B.10.000009
ORF1ab/nsp849F49MTtTAtG1313All0.000002
ORF1ab/nsp849F49delTTT---1212All0.000002
ORF1ab/nsp849F49NTTtAAt1212B.1.1.70.000011
ORF1ab/nsp849F49MTtTAtG1212B.1.1.70.000011
ORF1ab/nsp849F49KTTTAAA1012B.1.1.70.000009
ORF1ab/nsp849F49KTTTAAG212B.1.1.70.000002
ORF1ab/nsp849F49FttTttC1111C.370.001277
ORF1ab/nsp849F49LttTttA610B.10.000055
ORF1ab/nsp849F49LTttCtt210B.10.000018
ORF1ab/nsp849F49LTtTCtA110B.10.000009
ORF1ab/nsp849F49LttTttG110B.10.000009
ORF1ab/nsp849F49ETTTGAA610B.1.1.70.000005
ORF1ab/nsp849F49ETTTGAG410B.1.1.70.000004
ORF1ab/nsp849F49FttTttC99AY.3.10.000767
ORF1ab/nsp849F49DTTtGAt99B.10.000082
ORF1ab/nsp849F49NTTtAAt89B.10.000073
ORF1ab/nsp849F49NTTTAAC19B.10.000009
ORF1ab/nsp849F49DTTtGAt99B.1.1.70.000008
ORF1ab/nsp849F49XtTTtAA48B.10.000037
ORF1ab/nsp849F49GTTtGGt48B.10.000037
ORF1ab/nsp849F49XtTTtGA38B.10.000027
ORF1ab/nsp849F49GTTTGGA38B.10.000027
ORF1ab/nsp849F49XtTTtAG18B.10.000009
ORF1ab/nsp849F49GTTTGGG18B.10.000009
ORF1ab/nsp849F49del1Ttt-tt57All0.000001
ORF1ab/nsp849F49del1TTt-Nt27All0
ORF1ab/nsp849F49FttTttC77AY.160.002658
ORF1ab/nsp849F49FttTttC77AY.4.2.10.001043
ORF1ab/nsp849F49FttTttC77B.1.177.810.001325
ORF1ab/nsp849F49FttTttC66AY.40.000009
ORF1ab/nsp849F49STTtAGt36B.10.000027
ORF1ab/nsp849F49StTttCt36B.10.000027
ORF1ab/nsp849F49LTttCtt66B.1.1600.000187
ORF1ab/nsp849F49CtTttGt55B.10.000046
ORF1ab/nsp849F49RTTTAGA25B.10.000018
ORF1ab/nsp849F49RTTTAGG15B.10.000009
ORF1ab/nsp849F49RTTtCGt15B.10.000009
ORF1ab/nsp849F49RTTTCGA15B.10.000009
ORF1ab/nsp849F49FttTttC55B.1.617.20.000019
ORF1ab/nsp849F49TTTtACt24All0
ORF1ab/nsp849F49ATTtGCt24All0
ORF1ab/nsp849F49ATTTGCG14All0
ORF1ab/nsp849F49TTTTACA14All0
ORF1ab/nsp849F49ATTTGCA14All0
ORF1ab/nsp849F49TTTTACG14All0
ORF1ab/nsp849F49LttTttA34AY.250.000018
ORF1ab/nsp849F49LTttCtt14AY.250.000006
ORF1ab/nsp849F49ETTTGAA34B.10.000027
ORF1ab/nsp849F49KTTTAAA34B.10.000027
ORF1ab/nsp849F49KTTTAAG14B.10.000009
ORF1ab/nsp849F49ETTTGAG14B.10.000009
ORF1ab/nsp849F49VTttGtt44B.1.1600.000125
ORF1ab/nsp849F49VTttGtt34B.1.1770.00004
ORF1ab/nsp849F49ITttAtt34B.1.1770.00004
ORF1ab/nsp849F49ITtTAtA14B.1.1770.000013
ORF1ab/nsp849F49VTtTGtA14B.1.1770.000013
ORF1ab/nsp849F49ITttAtt330.166667
ORF1ab/nsp849F49FttTttC33AY.390.000074
ORF1ab/nsp849F49LTttCtt33AY.430.000013
ORF1ab/nsp849F49VTttGtt23B.1.10.000036
ORF1ab/nsp849F49VTtTGtG13B.1.10.000018
ORF1ab/nsp849F49TTTTACG13B.1.1.70.000001
ORF1ab/nsp849F49ATTTGCA13B.1.1.70.000001
ORF1ab/nsp849F49ATTTGCG13B.1.1.70.000001
ORF1ab/nsp849F49TTTTACA13B.1.1.70.000001
ORF1ab/nsp849F49ATTtGCt13B.1.1.70.000001
ORF1ab/nsp849F49TTTtACt13B.1.1.70.000001
ORF1ab/nsp849F49LttTttA33B.1.1770.00004
ORF1ab/nsp849F49FttTttC33B.1.20.000026
ORF1ab/nsp849F49LTtTCtG13P.10.000016
ORF1ab/nsp849F49LttTttG13P.10.000016
ORF1ab/nsp849F49LTttCtt13P.10.000016
ORF1ab/nsp849F49HTTtCAt22All0
ORF1ab/nsp849F49QTTTCAA12All0
ORF1ab/nsp849F49QTTTCAG12All0
ORF1ab/nsp849F49FttTttC22AY.1030.000012
ORF1ab/nsp849F49VTtTGtA12AY.250.000006
ORF1ab/nsp849F49GTTtGGt12AY.250.000006
ORF1ab/nsp849F49VTttGtt12AY.250.000006
ORF1ab/nsp849F49GTTTGGA12AY.250.000006
ORF1ab/nsp849F49LTttCtt22AY.30.00002
ORF1ab/nsp849F49delTTT---22AY.350.000466
ORF1ab/nsp849F49LTttCtt12AY.440.000006
ORF1ab/nsp849F49LttTttA12AY.440.000006
ORF1ab/nsp849F49FttTttC22AY.60.000082
ORF1ab/nsp849F49FttTttC22B.10.000018
ORF1ab/nsp849F49ITttAtt22B.1.10.000036
ORF1ab/nsp849F49YtTttAt22B.1.1770.000026
ORF1ab/nsp849F49DTTtGAt22B.1.1770.000026
ORF1ab/nsp849F49NTTtAAt22B.1.1770.000026
ORF1ab/nsp849F49FttTttC22B.1.1770.000026
ORF1ab/nsp849F49VTtTGtA12B.1.177.750.001041
ORF1ab/nsp849F49XtTTtGA12B.1.177.750.001041
ORF1ab/nsp849F49XtTTtAA12B.1.177.750.001041
ORF1ab/nsp849F49VTttGtt12B.1.177.750.001041
ORF1ab/nsp849F49GTTtGGt12B.1.177.750.001041
ORF1ab/nsp849F49GTTTGGA12B.1.177.750.001041
ORF1ab/nsp849F49ITttAtt22B.1.2210.000142
ORF1ab/nsp849F49STTtAGt12B.1.4170.028571
ORF1ab/nsp849F49StTttCt12B.1.4170.028571
ORF1ab/nsp849F49ITtTAtA12B.1.5250.000113
ORF1ab/nsp849F49ITttAtt12B.1.5250.000113
ORF1ab/nsp849F49VTtTGtA12B.1.5760.000907
ORF1ab/nsp849F49GTTTGGA12B.1.5760.000907
ORF1ab/nsp849F49GTTtGGt12B.1.5760.000907
ORF1ab/nsp849F49VTttGtt12B.1.5760.000907
ORF1ab/nsp849F49delTTT---22B.1.617.20.000008
ORF1ab/nsp849F49RTTtCGt12P.10.000016
ORF1ab/nsp849F49RTTTCGG12P.10.000016
ORF1ab/nsp849F49LttTttA22R.10.00018
ORF1ab/nsp849F49YtTttAt110.055556
ORF1ab/nsp849F49NTTtAAt110.055556
ORF1ab/nsp849F49LTttCtt11A0.000387
ORF1ab/nsp849F49FttTttC11A.2.5.30.010309
ORF1ab/nsp849F49del2tTTt--11All0
ORF1ab/nsp849F49LTttCtt11AY.1020.000027
ORF1ab/nsp849F49GTTtGGt11AY.1030.000006
ORF1ab/nsp849F49LTttCtt11AY.1030.000006
ORF1ab/nsp849F49FttTttC11AY.1080.001103
ORF1ab/nsp849F49LTttCtt11AY.1190.000035
ORF1ab/nsp849F49delTTT---11AY.230.00007
ORF1ab/nsp849F49CtTttGt11AY.250.000006
ORF1ab/nsp849F49FttTttC11AY.250.000006
ORF1ab/nsp849F49XtTTtGA11AY.250.000006
ORF1ab/nsp849F49delTTT---11AY.250.000006
ORF1ab/nsp849F49FttTttC11AY.290.000016
ORF1ab/nsp849F49FttTttC11AY.330.000067
ORF1ab/nsp849F49delTTT---11AY.380.000499
ORF1ab/nsp849F49LttTttA11AY.390.000025
ORF1ab/nsp849F49LTttCtt11AY.39.10.00004
ORF1ab/nsp849F49del1TTt-Nt11AY.40.000002
ORF1ab/nsp849F49VTttGtt11AY.40.000002
ORF1ab/nsp849F49LTttCtt11AY.40.000002
ORF1ab/nsp849F49del1TTt-Nt11AY.4.20.000022
ORF1ab/nsp849F49FttTttC11AY.440.000006
ORF1ab/nsp849F49VTttGtt11AY.440.000006
ORF1ab/nsp849F49FttTttC11AY.690.000187
ORF1ab/nsp849F49LTttCtt11AY.75.10.00018
ORF1ab/nsp849F49delTTT---11AY.75.10.00018
ORF1ab/nsp849F49LTttCtt11B0.000128
ORF1ab/nsp849F49HTTtCAt11B.10.000009
ORF1ab/nsp849F49delTTT---11B.10.000009
ORF1ab/nsp849F49QTTTCAA11B.10.000009
ORF1ab/nsp849F49MTtTAtG11B.10.000009
ORF1ab/nsp849F49WtTTtGG11B.10.000009
ORF1ab/nsp849F49FttTttC11B.1.10.000018
ORF1ab/nsp849F49LttTttG11B.1.10.000018
ORF1ab/nsp849F49delTTT---11B.1.10.000018
ORF1ab/nsp849F49LTttCtt11B.1.1.2030.016949
ORF1ab/nsp849F49FttTttC11B.1.1.3290.003846
ORF1ab/nsp849F49LTttCtt11B.1.1.3690.000446
ORF1ab/nsp849F49LTttCtt11B.1.1.4200.001006
ORF1ab/nsp849F49LTttCtt11B.1.1.5190.00004
ORF1ab/nsp849F49FttTttC11B.1.1.5190.00004
ORF1ab/nsp849F49del1Ttt-tt11B.1.1.70.000001
ORF1ab/nsp849F49DTTtGAt11B.1.1.700.000341
ORF1ab/nsp849F49YtTttAt11B.1.1.700.000341
ORF1ab/nsp849F49VTttGtt11B.1.1.700.000341
ORF1ab/nsp849F49DTTtGAt11B.1.1600.000031
ORF1ab/nsp849F49StTttCt11B.1.1600.000031
ORF1ab/nsp849F49YtTttAt11B.1.1600.000031
ORF1ab/nsp849F49ATTtGCt11B.1.1600.000031
ORF1ab/nsp849F49LTttCtt11B.1.160.160.000929
ORF1ab/nsp849F49FttTttC11B.1.160.80.001289
ORF1ab/nsp849F49YtTttAt11B.1.1670.007812
ORF1ab/nsp849F49XtTTtAA11B.1.1770.000013
ORF1ab/nsp849F49ETTTGAA11B.1.1770.000013
ORF1ab/nsp849F49KTTTAAA11B.1.1770.000013
ORF1ab/nsp849F49LttTttA11B.1.177.270.009434
ORF1ab/nsp849F49FttTttC11B.1.177.570.000281
ORF1ab/nsp849F49ITttAtt11B.1.177.730.000566
ORF1ab/nsp849F49LttTttA11B.1.177.750.001041
ORF1ab/nsp849F49YtTttAt11B.1.177.750.001041
ORF1ab/nsp849F49DTTtGAt11B.1.177.750.001041
ORF1ab/nsp849F49ETTTGAA11B.1.177.750.001041
ORF1ab/nsp849F49CtTttGt11B.1.177.750.001041
ORF1ab/nsp849F49CtTttGt11B.1.177.810.000189
ORF1ab/nsp849F49delTTT---11B.1.177.90.001332
ORF1ab/nsp849F49ITttAtt11B.1.20.000009
ORF1ab/nsp849F49LTttCtt11B.1.20.000009
ORF1ab/nsp849F49del2tTTt--11B.1.20.000009
ORF1ab/nsp849F49CtTttGt11B.1.20.000009
ORF1ab/nsp849F49StTttCt11B.1.2210.000071
ORF1ab/nsp849F49YtTttAt11B.1.2580.000067
ORF1ab/nsp849F49ITttAtt11B.1.2580.000067
ORF1ab/nsp849F49LttTttA11B.1.2580.000067
ORF1ab/nsp849F49NTTtAAt11B.1.2580.000067
ORF1ab/nsp849F49LTttCtt11B.1.3510.00003
ORF1ab/nsp849F49StTttCt11B.1.3510.00003
ORF1ab/nsp849F49del1Ttt-tt11B.1.3780.006849
ORF1ab/nsp849F49FttTttC11B.1.3890.001002
ORF1ab/nsp849F49ITttAtt11B.1.3910.001127
ORF1ab/nsp849F49ITttAtt11B.1.4170.028571
ORF1ab/nsp849F49TTTtACt11B.1.4170.028571
ORF1ab/nsp849F49CtTttGt11B.1.4170.028571
ORF1ab/nsp849F49LTttCtt11B.1.4290.000024
ORF1ab/nsp849F49LttTttA11B.1.5250.000113
ORF1ab/nsp849F49del1Ttt-tt11B.1.5670.003333
ORF1ab/nsp849F49LttTttA11B.1.5760.000907
ORF1ab/nsp849F49XtTTtGA11B.1.5760.000907
ORF1ab/nsp849F49CtTttGt11B.1.5760.000907
ORF1ab/nsp849F49del1Ttt-tt11B.1.5960.000087
ORF1ab/nsp849F49FttTttC11B.1.5960.000087
ORF1ab/nsp849F49LTttCtt11B.1.6100.003546
ORF1ab/nsp849F49VTttGtt11C.170.055556
ORF1ab/nsp849F49delTTT---11N.40.004255
ORF1ab/nsp849F49CtTttGt11P.10.000016
ORF1ab/nsp849F49YtTttAt11P.10.000016
ORF1ab/nsp849F49FttTttC11P.10.000016
ORF1ab/nsp849F49WtTTtGG11P.10.000016
ORF1ab/nsp849F49XtTTtAG11P.10.000016
ORF1ab/nsp849F49QTTTCAG11P.10.000016
ORF1ab/nsp849F49HTTtCAt11P.10.000016
ORF1ab/nsp849F49del1Ttt-tt11P.1.10.000318

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.