CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 48

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp848E48EE3990EsyngaAgaG355355112233-12235
ORF1ab/nsp848E48AE3990AnonsyngAagCa337337112233-12235
ORF1ab/nsp848E48VE3990VnonsyngAagTa337337112233-12235
ORF1ab/nsp848E48GE3990GnonsyngAagGa335335112233-12235
ORF1ab/nsp848E48DE3990DnonsyngaAgaC2391380.57740612233-12235
ORF1ab/nsp848E48DE3990DnonsyngaAgaT2391010.42259412233-12235
ORF1ab/nsp848E48KE3990KnonsynGaaAaa25240.9612233-12235
ORF1ab/nsp848E48KE3990KnonsynGaAAaG2510.0412233-12235
ORF1ab/nsp848E48XE3990XnonsynGaaTaa1818112233-12235
ORF1ab/nsp848E48del1E3990del1delgAag-a740.57142912233-12235
ORF1ab/nsp848E48del1E3990del1delgaAga-720.28571412233-12235
ORF1ab/nsp848E48del1E3990del1delGaa-aa710.14285712233-12235
ORF1ab/nsp848E48QE3990QnonsynGaaCaa44112233-12235
ORF1ab/nsp848E48delE3990deldelGAA---33112233-12235
ORF1ab/nsp848E48RE3990RnonsynGAaCGa11112233-12235

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp848E48EgaAgaG355355All0.000068
ORF1ab/nsp848E48VgAagTa337337All0.000064
ORF1ab/nsp848E48AgAagCa337337All0.000064
ORF1ab/nsp848E48GgAagGa335335All0.000064
ORF1ab/nsp848E48VgAagTa326326B.1.1.70.000292
ORF1ab/nsp848E48AgAagCa310310B.1.1.70.000278
ORF1ab/nsp848E48DgaAgaC138239All0.000026
ORF1ab/nsp848E48DgaAgaT101239All0.000019
ORF1ab/nsp848E48GgAagGa236236B.1.1770.003108
ORF1ab/nsp848E48EgaAgaG9595B.1.1.70.000085
ORF1ab/nsp848E48DgaAgaT4667B.1.1.70.000041
ORF1ab/nsp848E48DgaAgaC2167B.1.1.70.000019
ORF1ab/nsp848E48GgAagGa6666B.1.1.70.000059
ORF1ab/nsp848E48EgaAgaG5858AY.50.001198
ORF1ab/nsp848E48DgaAgaC4646B.1.1.5190.001827
ORF1ab/nsp848E48DgaAgaC4545B.1.6370.003288
ORF1ab/nsp848E48EgaAgaG3030B.1.1.390.015291
ORF1ab/nsp848E48KGaaAaa2425All0.000005
ORF1ab/nsp848E48KGaAAaG125All0
ORF1ab/nsp848E48DgaAgaT2225B.10.000202
ORF1ab/nsp848E48DgaAgaC325B.10.000027
ORF1ab/nsp848E48EgaAgaG2424AY.260.000679
ORF1ab/nsp848E48AgAagCa2424B.1.177.661
ORF1ab/nsp848E48EgaAgaG2020AY.440.000122
ORF1ab/nsp848E48XGaaTaa1818All0.000003
ORF1ab/nsp848E48EgaAgaG1616AY.40.000025
ORF1ab/nsp848E48EgaAgaG1515B.1.1.3710.15625
ORF1ab/nsp848E48EgaAgaG1313B.10.000119
ORF1ab/nsp848E48DgaAgaC1010B.6.60.008889
ORF1ab/nsp848E48VgAagTa88AY.390.000198
ORF1ab/nsp848E48XGaaTaa88B.10.000073
ORF1ab/nsp848E48del1gAag-a47All0.000001
ORF1ab/nsp848E48del1gaAga-27All0
ORF1ab/nsp848E48del1Gaa-aa17All0
ORF1ab/nsp848E48EgaAgaG77C.370.000812
ORF1ab/nsp848E48EgaAgaG77P.10.00011
ORF1ab/nsp848E48EgaAgaG66AY.430.000027
ORF1ab/nsp848E48EgaAgaG55AY.1030.000031
ORF1ab/nsp848E48GgAagGa55AY.40.000008
ORF1ab/nsp848E48DgaAgaC55AY.40.000008
ORF1ab/nsp848E48EgaAgaG55B.1.1770.000066
ORF1ab/nsp848E48KGaaAaa55P.10.000079
ORF1ab/nsp848E48QGaaCaa44All0.000001
ORF1ab/nsp848E48EgaAgaG44AY.250.000024
ORF1ab/nsp848E48EgaAgaG44B.1.1.500.002716
ORF1ab/nsp848E48DgaAgaT34B.1.1770.00004
ORF1ab/nsp848E48DgaAgaC14B.1.1770.000013
ORF1ab/nsp848E48GgAagGa44B.1.3510.000119
ORF1ab/nsp848E48delGAA---33All0.000001
ORF1ab/nsp848E48EgaAgaG33AY.160.001139
ORF1ab/nsp848E48EgaAgaG33AY.390.000074
ORF1ab/nsp848E48DgaAgaT33AY.440.000018
ORF1ab/nsp848E48EgaAgaG33AY.730.001996
ORF1ab/nsp848E48EgaAgaG33B.1.1.3740.007126
ORF1ab/nsp848E48KGaaAaa33B.1.1.70.000003
ORF1ab/nsp848E48EgaAgaG33B.1.177.600.000655
ORF1ab/nsp848E48KGaaAaa33B.1.20.000026
ORF1ab/nsp848E48DgaAgaT33B.1.3510.000089
ORF1ab/nsp848E48EgaAgaG33B.1.4710.008197
ORF1ab/nsp848E48KGaaAaa33D.20.000225
ORF1ab/nsp848E48DgaAgaC23P.10.000032
ORF1ab/nsp848E48DgaAgaT13P.10.000016
ORF1ab/nsp848E48KGaaAaa22AY.250.000012
ORF1ab/nsp848E48DgaAgaT22AY.350.000466
ORF1ab/nsp848E48EgaAgaG22AY.460.000208
ORF1ab/nsp848E48EgaAgaG22AY.590.001059
ORF1ab/nsp848E48XGaaTaa22B0.000256
ORF1ab/nsp848E48DgaAgaT22B0.000256
ORF1ab/nsp848E48KGaaAaa22B.10.000018
ORF1ab/nsp848E48GgAagGa22B.10.000018
ORF1ab/nsp848E48EgaAgaG22B.1.10.000036
ORF1ab/nsp848E48GgAagGa22B.1.1.2140.000111
ORF1ab/nsp848E48GgAagGa22B.1.1.5190.000079
ORF1ab/nsp848E48EgaAgaG22B.1.36.290.001035
ORF1ab/nsp848E48EgaAgaG22B.1.5240.002813
ORF1ab/nsp848E48EgaAgaG22B.1.5260.000047
ORF1ab/nsp848E48GgAagGa22B.1.617.10.000258
ORF1ab/nsp848E48DgaAgaT22B.1.617.20.000008
ORF1ab/nsp848E48del1Gaa-aa12B.1.617.20.000004
ORF1ab/nsp848E48del1gAag-a12B.1.617.20.000004
ORF1ab/nsp848E48GgAagGa22P.10.000032
ORF1ab/nsp848E48KGaaAaa22P.1.140.000096
ORF1ab/nsp848E48DgaAgaT110.055556
ORF1ab/nsp848E48XGaaTaa11A0.000387
ORF1ab/nsp848E48RGAaCGa11All0
ORF1ab/nsp848E48XGaaTaa11AW.10.003049
ORF1ab/nsp848E48DgaAgaT11AY.1020.000027
ORF1ab/nsp848E48GgAagGa11AY.1020.000027
ORF1ab/nsp848E48DgaAgaT11AY.1030.000006
ORF1ab/nsp848E48EgaAgaG11AY.1190.000035
ORF1ab/nsp848E48GgAagGa11AY.1190.000035
ORF1ab/nsp848E48RGAaCGa11AY.200.000039
ORF1ab/nsp848E48DgaAgaT11AY.230.00007
ORF1ab/nsp848E48DgaAgaT11AY.250.000006
ORF1ab/nsp848E48delGAA---11AY.250.000006
ORF1ab/nsp848E48GgAagGa11AY.30.00001
ORF1ab/nsp848E48EgaAgaG11AY.30.00001
ORF1ab/nsp848E48KGaaAaa11AY.300.000396
ORF1ab/nsp848E48QGaaCaa11AY.34.10.00051
ORF1ab/nsp848E48del1gAag-a11AY.360.000148
ORF1ab/nsp848E48DgaAgaT11AY.380.000499
ORF1ab/nsp848E48del1gaAga-11AY.40.000002
ORF1ab/nsp848E48KGaaAaa11AY.40.000002
ORF1ab/nsp848E48XGaaTaa11AY.40.000002
ORF1ab/nsp848E48del1gaAga-11AY.4.20.000022
ORF1ab/nsp848E48EgaAgaG11AY.4.2.10.000149
ORF1ab/nsp848E48GgAagGa11AY.430.000004
ORF1ab/nsp848E48GgAagGa11AY.440.000006
ORF1ab/nsp848E48GgAagGa11AY.470.000031
ORF1ab/nsp848E48XGaaTaa11AY.520.000814
ORF1ab/nsp848E48VgAagTa11AY.710.000475
ORF1ab/nsp848E48EgaAgaG11AY.740.000116
ORF1ab/nsp848E48DgaAgaT11AY.75.10.00018
ORF1ab/nsp848E48GgAagGa11AY.840.000437
ORF1ab/nsp848E48EgaAgaG11AY.9.20.000037
ORF1ab/nsp848E48DgaAgaC11AY.9.20.000037
ORF1ab/nsp848E48delGAA---11B.10.000009
ORF1ab/nsp848E48del1gAag-a11B.10.000009
ORF1ab/nsp848E48QGaaCaa11B.1.10.000018
ORF1ab/nsp848E48DgaAgaC11B.1.1.1580.012195
ORF1ab/nsp848E48EgaAgaG11B.1.1.280.000311
ORF1ab/nsp848E48EgaAgaG11B.1.1.5190.00004
ORF1ab/nsp848E48DgaAgaT11B.1.1.700.000341
ORF1ab/nsp848E48GgAagGa11B.1.1.920.033333
ORF1ab/nsp848E48DgaAgaT11B.1.1600.000031
ORF1ab/nsp848E48GgAagGa11B.1.160.170.001701
ORF1ab/nsp848E48AgAagCa11B.1.160.270.015152
ORF1ab/nsp848E48AgAagCa11B.1.1770.000013
ORF1ab/nsp848E48EgaAgaG11B.1.177.330.001645
ORF1ab/nsp848E48DgaAgaT11B.1.177.750.001041
ORF1ab/nsp848E48DgaAgaT11B.1.177.810.000189
ORF1ab/nsp848E48DgaAgaT11B.1.177.90.001332
ORF1ab/nsp848E48XGaaTaa11B.1.20.000009
ORF1ab/nsp848E48DgaAgaT11B.1.20.000009
ORF1ab/nsp848E48DgaAgaT11B.1.2210.000071
ORF1ab/nsp848E48EgaAgaG11B.1.2580.000067
ORF1ab/nsp848E48DgaAgaT11B.1.2580.000067
ORF1ab/nsp848E48EgaAgaG11B.1.258.170.000104
ORF1ab/nsp848E48GgAagGa11B.1.258.170.000104
ORF1ab/nsp848E48GgAagGa11B.1.2790.000514
ORF1ab/nsp848E48XGaaTaa11B.1.3010.005917
ORF1ab/nsp848E48KGaaAaa11B.1.3380.008621
ORF1ab/nsp848E48del1gAag-a11B.1.36.10.00114
ORF1ab/nsp848E48XGaaTaa11B.1.3690.000285
ORF1ab/nsp848E48EgaAgaG11B.1.4170.028571
ORF1ab/nsp848E48EgaAgaG11B.1.4290.000024
ORF1ab/nsp848E48EgaAgaG11B.1.4370.020833
ORF1ab/nsp848E48DgaAgaT11B.1.4370.020833
ORF1ab/nsp848E48DgaAgaT11B.1.5250.000113
ORF1ab/nsp848E48EgaAgaG11B.1.5760.000907
ORF1ab/nsp848E48GgAagGa11B.1.6090.000479
ORF1ab/nsp848E48KGaaAaa11B.1.617.10.000129
ORF1ab/nsp848E48AgAagCa11B.1.617.20.000004
ORF1ab/nsp848E48GgAagGa11B.1.617.20.000004
ORF1ab/nsp848E48QGaaCaa11B.1.617.20.000004
ORF1ab/nsp848E48EgaAgaG11B.1.617.20.000004
ORF1ab/nsp848E48XGaaTaa11B.1.6230.000536
ORF1ab/nsp848E48EgaAgaG11B.490.05
ORF1ab/nsp848E48KGaAAaG11C.170.055556
ORF1ab/nsp848E48DgaAgaC11C.360.000911
ORF1ab/nsp848E48QGaaCaa11D.20.000075
ORF1ab/nsp848E48GgAagGa11D.20.000075
ORF1ab/nsp848E48delGAA---11N.40.004255
ORF1ab/nsp848E48VgAagTa11P.10.000016
ORF1ab/nsp848E48VgAagTa11P.1.10.000318
ORF1ab/nsp848E48DgaAgaC11P.1.10.000318
ORF1ab/nsp848E48DgaAgaC11Q.80.000165