CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 43

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp843N43HN3985HnonsynAatCat5435420.99815812218-12220
ORF1ab/nsp843N43HN3985HnonsynAaTCaC54310.0018416212218-12220
ORF1ab/nsp843N43NN3985NsynaaTaaC245245112218-12220
ORF1ab/nsp843N43SN3985SnonsynaAtaGt1212112218-12220
ORF1ab/nsp843N43delN3985deldelAAT---66112218-12220
ORF1ab/nsp843N43YN3985YnonsynAatTat55112218-12220
ORF1ab/nsp843N43del1N3985del1delaaTaa-33112218-12220
ORF1ab/nsp843N43KN3985KnonsynaaTaaA320.66666712218-12220
ORF1ab/nsp843N43KN3985KnonsynaaTaaG310.33333312218-12220
ORF1ab/nsp843N43IN3985InonsynaAtaTt22112218-12220
ORF1ab/nsp843N43AN3985AnonsynAAtGCt22112218-12220
ORF1ab/nsp843N43DN3985DnonsynAatGat22112218-12220
ORF1ab/nsp843N43TN3985TnonsynaAtaCt11112218-12220

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp843N43HAatCat542543All0.000104
ORF1ab/nsp843N43HAaTCaC1543All0
ORF1ab/nsp843N43HAatCat524524L.10.998095
ORF1ab/nsp843N43NaaTaaC245245All0.000047
ORF1ab/nsp843N43NaaTaaC7979AY.40.000123
ORF1ab/nsp843N43NaaTaaC2525B.1.617.20.000094
ORF1ab/nsp843N43NaaTaaC2323B.1.1.70.000021
ORF1ab/nsp843N43NaaTaaC1818B.1.4270.000909
ORF1ab/nsp843N43NaaTaaC1313AY.1020.000345
ORF1ab/nsp843N43SaAtaGt1212All0.000002
ORF1ab/nsp843N43NaaTaaC1010AY.250.00006
ORF1ab/nsp843N43NaaTaaC99AY.9.10.000754
ORF1ab/nsp843N43NaaTaaC99B.1.3510.000268
ORF1ab/nsp843N43NaaTaaC88AY.440.000049
ORF1ab/nsp843N43NaaTaaC77AY.430.000031
ORF1ab/nsp843N43NaaTaaC77B.1.2430.000487
ORF1ab/nsp843N43delAAT---66All0.000001
ORF1ab/nsp843N43YAatTat55All0.000001
ORF1ab/nsp843N43NaaTaaC44AY.1180.000251
ORF1ab/nsp843N43HAatCat44AY.250.000024
ORF1ab/nsp843N43HAatCat44B.1.1.100.004459
ORF1ab/nsp843N43NaaTaaC44B.1.1600.000125
ORF1ab/nsp843N43del1aaTaa-33All0.000001
ORF1ab/nsp843N43KaaTaaA23All0
ORF1ab/nsp843N43KaaTaaG13All0
ORF1ab/nsp843N43NaaTaaC33AY.1210.000406
ORF1ab/nsp843N43HAatCat33AY.40.000005
ORF1ab/nsp843N43NaaTaaC33AY.46.30.002801
ORF1ab/nsp843N43NaaTaaC33AY.9.20.00011
ORF1ab/nsp843N43YAatTat33B.1.1.70.000003
ORF1ab/nsp843N43IaAtaTt22All0
ORF1ab/nsp843N43DAatGat22All0
ORF1ab/nsp843N43AAAtGCt22All0
ORF1ab/nsp843N43HAatCat22AY.1130.000285
ORF1ab/nsp843N43SaAtaGt22AY.1190.000071
ORF1ab/nsp843N43NaaTaaC22AY.390.000049
ORF1ab/nsp843N43NaaTaaC22B.10.000018
ORF1ab/nsp843N43delAAT---22B.10.000018
ORF1ab/nsp843N43SaAtaGt22B.1.1.70.000002
ORF1ab/nsp843N43NaaTaaC22B.1.20.000018
ORF1ab/nsp843N43NaaTaaC22B.1.258.170.000208
ORF1ab/nsp843N43NaaTaaC22B.1.5260.000047
ORF1ab/nsp843N43YAatTat110.055556
ORF1ab/nsp843N43TaAtaCt11All0
ORF1ab/nsp843N43NaaTaaC11AY.1130.000142
ORF1ab/nsp843N43NaaTaaC11AY.120.000316
ORF1ab/nsp843N43HAatCat11AY.120.2.10.000498
ORF1ab/nsp843N43delAAT---11AY.250.000006
ORF1ab/nsp843N43SaAtaGt11AY.290.000016
ORF1ab/nsp843N43TaAtaCt11AY.30.00001
ORF1ab/nsp843N43NaaTaaC11AY.30.00001
ORF1ab/nsp843N43SaAtaGt11AY.40.000002
ORF1ab/nsp843N43HAaTCaC11AY.440.000006
ORF1ab/nsp843N43KaaTaaA11AY.440.000006
ORF1ab/nsp843N43NaaTaaC11AY.470.000031
ORF1ab/nsp843N43SaAtaGt11AY.610.000105
ORF1ab/nsp843N43SaAtaGt11AY.780.001541
ORF1ab/nsp843N43del1aaTaa-11AY.790.001211
ORF1ab/nsp843N43NaaTaaC11AY.980.000079
ORF1ab/nsp843N43HAatCat11B.10.000009
ORF1ab/nsp843N43IaAtaTt11B.10.000009
ORF1ab/nsp843N43DAatGat11B.10.000009
ORF1ab/nsp843N43NaaTaaC11B.1.10.000018
ORF1ab/nsp843N43HAatCat11B.1.10.000018
ORF1ab/nsp843N43HAatCat11B.1.1.2300.009174
ORF1ab/nsp843N43SaAtaGt11B.1.1.3980.003226
ORF1ab/nsp843N43delAAT---11B.1.1.70.000001
ORF1ab/nsp843N43KaaTaaG11B.1.1.70.000001
ORF1ab/nsp843N43IaAtaTt11B.1.1.70.000001
ORF1ab/nsp843N43SaAtaGt11B.1.1770.000013
ORF1ab/nsp843N43delAAT---11B.1.20.000009
ORF1ab/nsp843N43YAatTat11B.1.20.000009
ORF1ab/nsp843N43del1aaTaa-11B.1.20.000009
ORF1ab/nsp843N43DAatGat11B.1.3360.002439
ORF1ab/nsp843N43NaaTaaC11B.1.4160.001269
ORF1ab/nsp843N43SaAtaGt11B.1.5520.015152
ORF1ab/nsp843N43del1aaTaa-11B.1.5950.000261
ORF1ab/nsp843N43NaaTaaC11B.1.5960.000087
ORF1ab/nsp843N43AAAtGCt11B.1.617.20.000004
ORF1ab/nsp843N43SaAtaGt11B.1.617.20.000004
ORF1ab/nsp843N43NaaTaaC11B.1.6280.000352
ORF1ab/nsp843N43KaaTaaA11B.1.6370.000073
ORF1ab/nsp843N43AAAtGCt11C.170.055556
ORF1ab/nsp843N43delAAT---11N.40.004255
ORF1ab/nsp843N43HAatCat11P.1.70.000319
ORF1ab/nsp843N43NaaTaaC11Q.80.000165