CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 4 & Codon = Gca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp84S4AS3946AnonsynTcaGca272272112101-12103

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp84S4ATcaGca272272All0.000052
ORF1ab/nsp84S4ATcaGca215215AY.260.006087
ORF1ab/nsp84S4ATcaGca1111AY.40.000017
ORF1ab/nsp84S4ATcaGca88AY.250.000048
ORF1ab/nsp84S4ATcaGca88AY.290.000126
ORF1ab/nsp84S4ATcaGca77B.1.1.70.000006
ORF1ab/nsp84S4ATcaGca33B.1.1.280.000934
ORF1ab/nsp84S4ATcaGca33B.1.1260.003827
ORF1ab/nsp84S4ATcaGca220.111111
ORF1ab/nsp84S4ATcaGca22AY.1190.000071
ORF1ab/nsp84S4ATcaGca22B.1.1770.000026
ORF1ab/nsp84S4ATcaGca22B.1.20.000018
ORF1ab/nsp84S4ATcaGca22B.1.617.20.000008
ORF1ab/nsp84S4ATcaGca11AY.1100.000113
ORF1ab/nsp84S4ATcaGca11AY.390.000025
ORF1ab/nsp84S4ATcaGca11AY.4.10.000737
ORF1ab/nsp84S4ATcaGca11AY.430.000004
ORF1ab/nsp84S4ATcaGca11AY.450.000122
ORF1ab/nsp84S4ATcaGca11AY.980.000079
ORF1ab/nsp84S4ATcaGca11B.1.4290.000024

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.