CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 4

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp84S4SS3946SsyntcAtcG10559540.90426512101-12103
ORF1ab/nsp84S4SS3946SsyntcAtcT1055860.081516612101-12103
ORF1ab/nsp84S4SS3946SsyntcAtcC1055140.013270112101-12103
ORF1ab/nsp84S4SS3946SsynTCAAGC105510.00094786712101-12103
ORF1ab/nsp84S4LS3946LnonsyntCatTa664664112101-12103
ORF1ab/nsp84S4AS3946AnonsynTcaGca272272112101-12103
ORF1ab/nsp84S4TS3946TnonsynTcaAca1161150.99137912101-12103
ORF1ab/nsp84S4TS3946TnonsynTcAAcC11610.0086206912101-12103
ORF1ab/nsp84S4PS3946PnonsynTcaCca88112101-12103
ORF1ab/nsp84S4delS3946deldelTCA---66112101-12103
ORF1ab/nsp84S4XS3946XnonsyntCatAa430.7512101-12103
ORF1ab/nsp84S4del1S3946del1delTca-ca420.512101-12103
ORF1ab/nsp84S4del1S3946del1deltcAtc-420.512101-12103
ORF1ab/nsp84S4XS3946XnonsyntCatGa410.2512101-12103
ORF1ab/nsp84S4CS3946CnonsyntCAtGT320.66666712101-12103
ORF1ab/nsp84S4CS3946CnonsyntCAtGC310.33333312101-12103
ORF1ab/nsp84S4del2S3946del2delTCAC--210.512101-12103
ORF1ab/nsp84S4del2S3946del2delTCa--a210.512101-12103
ORF1ab/nsp84S4YS3946YnonsyntCAtAC11112101-12103
ORF1ab/nsp84S4RS3946RnonsynTCaAGa11112101-12103
ORF1ab/nsp84S4NS3946NnonsynTCAAAC11112101-12103
ORF1ab/nsp84S4KS3946KnonsynTCaAAa11112101-12103

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp84S4StcAtcG9541055All0.000182
ORF1ab/nsp84S4StcAtcT861055All0.000016
ORF1ab/nsp84S4StcAtcC141055All0.000003
ORF1ab/nsp84S4STCAAGC11055All0
ORF1ab/nsp84S4LtCatTa664664All0.000127
ORF1ab/nsp84S4StcAtcG584584AP.10.876877
ORF1ab/nsp84S4ATcaGca272272All0.000052
ORF1ab/nsp84S4ATcaGca215215AY.260.006087
ORF1ab/nsp84S4LtCatTa125125B.1.1.70.000112
ORF1ab/nsp84S4TTcaAca115116All0.000022
ORF1ab/nsp84S4TTcAAcC1116All0
ORF1ab/nsp84S4StcAtcG7186B.1.1.70.000064
ORF1ab/nsp84S4StcAtcT1486B.1.1.70.000013
ORF1ab/nsp84S4StcAtcC186B.1.1.70.000001
ORF1ab/nsp84S4LtCatTa8585B.1.5260.001998
ORF1ab/nsp84S4TTcaAca7676B.1.36.380.124795
ORF1ab/nsp84S4StcAtcG6771AY.40.000104
ORF1ab/nsp84S4StcAtcT371AY.40.000005
ORF1ab/nsp84S4StcAtcC171AY.40.000002
ORF1ab/nsp84S4LtCatTa6464AY.40.0001
ORF1ab/nsp84S4StcAtcT3150B.1.617.20.000117
ORF1ab/nsp84S4StcAtcG1950B.1.617.20.000072
ORF1ab/nsp84S4LtCatTa3434B.1.617.20.000128
ORF1ab/nsp84S4LtCatTa2626B.10.000238
ORF1ab/nsp84S4LtCatTa2626B.1.1.1810.118182
ORF1ab/nsp84S4StcAtcG2424B.10.00022
ORF1ab/nsp84S4StcAtcG2022B.1.10.000363
ORF1ab/nsp84S4StcAtcT222B.1.10.000036
ORF1ab/nsp84S4LtCatTa2121AY.30.000209
ORF1ab/nsp84S4LtCatTa2020AY.290.000315
ORF1ab/nsp84S4StcAtcG2020B.1.177.730.011325
ORF1ab/nsp84S4StcAtcT1218AY.430.000053
ORF1ab/nsp84S4StcAtcG518AY.430.000022
ORF1ab/nsp84S4StcAtcC118AY.430.000004
ORF1ab/nsp84S4LtCatTa1717P.10.000268
ORF1ab/nsp84S4LtCatTa1616AY.250.000096
ORF1ab/nsp84S4StcAtcG1616B.1.5260.000376
ORF1ab/nsp84S4StcAtcG1315AY.1030.000081
ORF1ab/nsp84S4StcAtcT215AY.1030.000012
ORF1ab/nsp84S4LtCatTa1515AY.430.000066
ORF1ab/nsp84S4StcAtcG1414AY.1100.001578
ORF1ab/nsp84S4LtCatTa1414AY.740.001619
ORF1ab/nsp84S4LtCatTa1414B.1.10.000254
ORF1ab/nsp84S4LtCatTa1212AY.440.000073
ORF1ab/nsp84S4ATcaGca1111AY.40.000017
ORF1ab/nsp84S4TTcaAca1010B.1.1.70.000009
ORF1ab/nsp84S4LtCatTa99AY.390.000222
ORF1ab/nsp84S4StcAtcG99AY.980.000711
ORF1ab/nsp84S4LtCatTa99B.1.1770.000119
ORF1ab/nsp84S4PTcaCca88All0.000002
ORF1ab/nsp84S4ATcaGca88AY.250.000048
ORF1ab/nsp84S4ATcaGca88AY.290.000126
ORF1ab/nsp84S4StcAtcG68AY.30.00006
ORF1ab/nsp84S4StcAtcT28AY.30.00002
ORF1ab/nsp84S4LtCatTa88B.1.20.00007
ORF1ab/nsp84S4TTcaAca77AY.40.000011
ORF1ab/nsp84S4StcAtcG37AY.440.000018
ORF1ab/nsp84S4StcAtcT37AY.440.000018
ORF1ab/nsp84S4StcAtcC17AY.440.000006
ORF1ab/nsp84S4LtCatTa77AY.50.000145
ORF1ab/nsp84S4ATcaGca77B.1.1.70.000006
ORF1ab/nsp84S4delTCA---66All0.000001
ORF1ab/nsp84S4StcAtcG66AY.23.10.002504
ORF1ab/nsp84S4StcAtcG56AY.4.20.000108
ORF1ab/nsp84S4StcAtcT16AY.4.20.000022
ORF1ab/nsp84S4StcAtcG66B.1.1.3170.00247
ORF1ab/nsp84S4StcAtcG56B.1.1600.000156
ORF1ab/nsp84S4StcAtcT16B.1.1600.000031
ORF1ab/nsp84S4StcAtcG66B.1.4290.000141
ORF1ab/nsp84S4StcAtcG55AY.250.00003
ORF1ab/nsp84S4StcAtcT35B.1.20.000026
ORF1ab/nsp84S4StcAtcG25B.1.20.000018
ORF1ab/nsp84S4LtCatTa55B.1.4290.000118
ORF1ab/nsp84S4LtCatTa55B.1.438.10.000536
ORF1ab/nsp84S4StcAtcG45P.10.000063
ORF1ab/nsp84S4StcAtcC15P.10.000016
ORF1ab/nsp84S4StcAtcC340.166667
ORF1ab/nsp84S4STCAAGC140.055556
ORF1ab/nsp84S4XtCatAa34All0.000001
ORF1ab/nsp84S4del1Tca-ca24All0
ORF1ab/nsp84S4del1tcAtc-24All0
ORF1ab/nsp84S4XtCatGa14All0
ORF1ab/nsp84S4LtCatTa44AY.1030.000025
ORF1ab/nsp84S4LtCatTa44AY.1180.000251
ORF1ab/nsp84S4StcAtcT34AY.1190.000106
ORF1ab/nsp84S4StcAtcG14AY.1190.000035
ORF1ab/nsp84S4LtCatTa44AY.9.10.000335
ORF1ab/nsp84S4LtCatTa44B.1.1.500.002716
ORF1ab/nsp84S4LtCatTa44B.1.2210.000284
ORF1ab/nsp84S4PTcaCca330.166667
ORF1ab/nsp84S4CtCAtGT23All0
ORF1ab/nsp84S4CtCAtGC13All0
ORF1ab/nsp84S4TTcaAca33AY.120.2.10.001495
ORF1ab/nsp84S4LtCatTa33AY.130.000483
ORF1ab/nsp84S4LtCatTa33AY.260.000085
ORF1ab/nsp84S4LtCatTa33AY.330.0002
ORF1ab/nsp84S4TTcaAca33AY.430.000013
ORF1ab/nsp84S4StcAtcG23AY.450.000243
ORF1ab/nsp84S4StcAtcC13AY.450.000122
ORF1ab/nsp84S4LtCatTa33AY.470.000093
ORF1ab/nsp84S4StcAtcT23AY.50.000041
ORF1ab/nsp84S4StcAtcG13AY.50.000021
ORF1ab/nsp84S4ATcaGca33B.1.1.280.000934
ORF1ab/nsp84S4ATcaGca33B.1.1260.003827
ORF1ab/nsp84S4TTcaAca33B.1.1770.00004
ORF1ab/nsp84S4LtCatTa33B.1.5250.000339
ORF1ab/nsp84S4LtCatTa33L.10.005714
ORF1ab/nsp84S4ATcaGca220.111111
ORF1ab/nsp84S4XtCatGa120.055556
ORF1ab/nsp84S4TTcaAca120.055556
ORF1ab/nsp84S4TTcAAcC120.055556
ORF1ab/nsp84S4XtCatAa120.055556
ORF1ab/nsp84S4del2TCa--a12All0
ORF1ab/nsp84S4del2TCAC--12All0
ORF1ab/nsp84S4StcAtcT22AY.1020.000053
ORF1ab/nsp84S4LtCatTa22AY.1020.000053
ORF1ab/nsp84S4LtCatTa22AY.1100.000225
ORF1ab/nsp84S4ATcaGca22AY.1190.000071
ORF1ab/nsp84S4StcAtcC12AY.3.10.000085
ORF1ab/nsp84S4StcAtcG12AY.3.10.000085
ORF1ab/nsp84S4LtCatTa22AY.39.10.000079
ORF1ab/nsp84S4StcAtcG22AY.420.00008
ORF1ab/nsp84S4LtCatTa22AY.420.00008
ORF1ab/nsp84S4TTcaAca22AY.440.000012
ORF1ab/nsp84S4LtCatTa22AY.600.001876
ORF1ab/nsp84S4LtCatTa22AY.75.10.000361
ORF1ab/nsp84S4LtCatTa22AY.980.000158
ORF1ab/nsp84S4LtCatTa22AY.98.10.000097
ORF1ab/nsp84S4StcAtcG22B0.000256
ORF1ab/nsp84S4StcAtcG22B.1.1.10.000653
ORF1ab/nsp84S4LtCatTa22B.1.1.5190.000079
ORF1ab/nsp84S4delTCA---22B.1.1.70.000002
ORF1ab/nsp84S4ATcaGca22B.1.1770.000026
ORF1ab/nsp84S4StcAtcG22B.1.1770.000026
ORF1ab/nsp84S4StcAtcG22B.1.177.170.001642
ORF1ab/nsp84S4LtCatTa22B.1.177.810.000379
ORF1ab/nsp84S4ATcaGca22B.1.20.000018
ORF1ab/nsp84S4LtCatTa22B.1.2430.000139
ORF1ab/nsp84S4LtCatTa22B.1.3510.000059
ORF1ab/nsp84S4LtCatTa22B.1.351.20.000605
ORF1ab/nsp84S4LtCatTa22B.1.4270.000101
ORF1ab/nsp84S4LtCatTa22B.1.617.10.000258
ORF1ab/nsp84S4TTcaAca22B.1.617.20.000008
ORF1ab/nsp84S4ATcaGca22B.1.617.20.000008
ORF1ab/nsp84S4StcAtcG22B.1.6210.000177
ORF1ab/nsp84S4StcAtcG22C.370.000232
ORF1ab/nsp84S4LtCatTa22D.20.00015
ORF1ab/nsp84S4StcAtcT12P.1.140.000048
ORF1ab/nsp84S4StcAtcG12P.1.140.000048
ORF1ab/nsp84S4CtCAtGC110.055556
ORF1ab/nsp84S4YtCAtAC110.055556
ORF1ab/nsp84S4NTCAAAC110.055556
ORF1ab/nsp84S4RTCaAGa110.055556
ORF1ab/nsp84S4KTCaAAa110.055556
ORF1ab/nsp84S4StcAtcC11A0.000387
ORF1ab/nsp84S4LtCatTa11AA.70.009174
ORF1ab/nsp84S4KTCaAAa11All0
ORF1ab/nsp84S4RTCaAGa11All0
ORF1ab/nsp84S4YtCAtAC11All0
ORF1ab/nsp84S4NTCAAAC11All0
ORF1ab/nsp84S4TTcaAca11AY.1000.000046
ORF1ab/nsp84S4ATcaGca11AY.1100.000113
ORF1ab/nsp84S4LtCatTa11AY.1170.000085
ORF1ab/nsp84S4StcAtcT11AY.1170.000085
ORF1ab/nsp84S4LtCatTa11AY.1190.000035
ORF1ab/nsp84S4LtCatTa11AY.120.000316
ORF1ab/nsp84S4TTcaAca11AY.1200.000037
ORF1ab/nsp84S4LtCatTa11AY.1200.000037
ORF1ab/nsp84S4StcAtcG11AY.1200.000037
ORF1ab/nsp84S4StcAtcG11AY.1210.000135
ORF1ab/nsp84S4LtCatTa11AY.1210.000135
ORF1ab/nsp84S4StcAtcG11AY.140.000088
ORF1ab/nsp84S4StcAtcG11AY.160.00038
ORF1ab/nsp84S4LtCatTa11AY.200.000039
ORF1ab/nsp84S4LtCatTa11AY.23.10.000417
ORF1ab/nsp84S4del1Tca-ca11AY.250.000006
ORF1ab/nsp84S4LtCatTa11AY.270.000065
ORF1ab/nsp84S4LtCatTa11AY.29.10.000221
ORF1ab/nsp84S4TTcaAca11AY.30.00001
ORF1ab/nsp84S4LtCatTa11AY.300.000396
ORF1ab/nsp84S4StcAtcG11AY.300.000396
ORF1ab/nsp84S4StcAtcG11AY.320.000532
ORF1ab/nsp84S4StcAtcT11AY.340.000097
ORF1ab/nsp84S4LtCatTa11AY.34.10.00051
ORF1ab/nsp84S4StcAtcG11AY.360.000148
ORF1ab/nsp84S4ATcaGca11AY.390.000025
ORF1ab/nsp84S4StcAtcG11AY.390.000025
ORF1ab/nsp84S4ATcaGca11AY.4.10.000737
ORF1ab/nsp84S4LtCatTa11AY.4.2.10.000149
ORF1ab/nsp84S4StcAtcG11AY.4.50.000107
ORF1ab/nsp84S4ATcaGca11AY.430.000004
ORF1ab/nsp84S4del2TCAC--11AY.440.000006
ORF1ab/nsp84S4ATcaGca11AY.450.000122
ORF1ab/nsp84S4StcAtcT11AY.460.000104
ORF1ab/nsp84S4LtCatTa11AY.46.10.001027
ORF1ab/nsp84S4StcAtcG11AY.470.000031
ORF1ab/nsp84S4LtCatTa11AY.520.000814
ORF1ab/nsp84S4LtCatTa11AY.530.000288
ORF1ab/nsp84S4LtCatTa11AY.540.000095
ORF1ab/nsp84S4TTcaAca11AY.550.000917
ORF1ab/nsp84S4StcAtcG11AY.60.000041
ORF1ab/nsp84S4LtCatTa11AY.60.000041
ORF1ab/nsp84S4LtCatTa11AY.660.00107
ORF1ab/nsp84S4LtCatTa11AY.7.10.000113
ORF1ab/nsp84S4LtCatTa11AY.700.000209
ORF1ab/nsp84S4StcAtcG11AY.710.000475
ORF1ab/nsp84S4LtCatTa11AY.860.00083
ORF1ab/nsp84S4LtCatTa11AY.90.000068
ORF1ab/nsp84S4StcAtcG11AY.9.20.000037
ORF1ab/nsp84S4LtCatTa11AY.950.000761
ORF1ab/nsp84S4ATcaGca11AY.980.000079
ORF1ab/nsp84S4StcAtcT11AY.98.10.000048
ORF1ab/nsp84S4StcAtcG11AY.99.20.000092
ORF1ab/nsp84S4XtCatAa11B.10.000009
ORF1ab/nsp84S4PTcaCca11B.10.000009
ORF1ab/nsp84S4TTcaAca11B.10.000009
ORF1ab/nsp84S4delTCA---11B.10.000009
ORF1ab/nsp84S4del1tcAtc-11B.10.000009
ORF1ab/nsp84S4delTCA---11B.1.10.000018
ORF1ab/nsp84S4TTcaAca11B.1.10.000018
ORF1ab/nsp84S4LtCatTa11B.1.1.10.000327
ORF1ab/nsp84S4LtCatTa11B.1.1.1700.001247
ORF1ab/nsp84S4LtCatTa11B.1.1.1760.000439
ORF1ab/nsp84S4LtCatTa11B.1.1.1980.001468
ORF1ab/nsp84S4StcAtcG11B.1.1.2370.005405
ORF1ab/nsp84S4StcAtcC11B.1.1.2420.043478
ORF1ab/nsp84S4LtCatTa11B.1.1.250.000569
ORF1ab/nsp84S4LtCatTa11B.1.1.280.000311
ORF1ab/nsp84S4StcAtcG11B.1.1.280.000311
ORF1ab/nsp84S4LtCatTa11B.1.1.3060.000438
ORF1ab/nsp84S4LtCatTa11B.1.1.3160.000925
ORF1ab/nsp84S4LtCatTa11B.1.1.3550.015385
ORF1ab/nsp84S4StcAtcC11B.1.1.390.00051
ORF1ab/nsp84S4LtCatTa11B.1.1.3910.008547
ORF1ab/nsp84S4LtCatTa11B.1.1.5000.02
ORF1ab/nsp84S4StcAtcG11B.1.1.5280.004808
ORF1ab/nsp84S4LtCatTa11B.1.1.580.005376
ORF1ab/nsp84S4del2TCa--a11B.1.1.70.000001
ORF1ab/nsp84S4CtCAtGT11B.1.1.70.000001
ORF1ab/nsp84S4PTcaCca11B.1.1.70.000001
ORF1ab/nsp84S4LtCatTa11B.1.177.100.000878
ORF1ab/nsp84S4LtCatTa11B.1.177.210.000076
ORF1ab/nsp84S4LtCatTa11B.1.177.410.0025
ORF1ab/nsp84S4LtCatTa11B.1.177.420.000894
ORF1ab/nsp84S4LtCatTa11B.1.177.520.001757
ORF1ab/nsp84S4StcAtcG11B.1.177.560.000668
ORF1ab/nsp84S4TTcaAca11B.1.177.570.000281
ORF1ab/nsp84S4delTCA---11B.1.177.860.000183
ORF1ab/nsp84S4LtCatTa11B.1.177.860.000183
ORF1ab/nsp84S4LtCatTa11B.1.1820.007246
ORF1ab/nsp84S4XtCatAa11B.1.20.000009
ORF1ab/nsp84S4PTcaCca11B.1.20.000009
ORF1ab/nsp84S4LtCatTa11B.1.220.001318
ORF1ab/nsp84S4StcAtcG11B.1.2210.000071
ORF1ab/nsp84S4StcAtcG11B.1.2320.000537
ORF1ab/nsp84S4PTcaCca11B.1.2340.000132
ORF1ab/nsp84S4StcAtcG11B.1.2580.000067
ORF1ab/nsp84S4LtCatTa11B.1.2600.003344
ORF1ab/nsp84S4LtCatTa11B.1.3110.000275
ORF1ab/nsp84S4CtCAtGT11B.1.360.000146
ORF1ab/nsp84S4LtCatTa11B.1.360.000146
ORF1ab/nsp84S4LtCatTa11B.1.3780.006849
ORF1ab/nsp84S4ATcaGca11B.1.4290.000024
ORF1ab/nsp84S4PTcaCca11B.1.4590.004082
ORF1ab/nsp84S4LtCatTa11B.1.4600.017857
ORF1ab/nsp84S4LtCatTa11B.1.466.20.000391
ORF1ab/nsp84S4StcAtcC11B.1.466.20.000391
ORF1ab/nsp84S4LtCatTa11B.1.4700.001404
ORF1ab/nsp84S4StcAtcG11B.1.5250.000113
ORF1ab/nsp84S4StcAtcG11B.1.5760.000907
ORF1ab/nsp84S4del1Tca-ca11B.1.5950.000261
ORF1ab/nsp84S4LtCatTa11B.1.5960.000087
ORF1ab/nsp84S4LtCatTa11B.1.6020.006536
ORF1ab/nsp84S4del1tcAtc-11B.1.617.10.000129
ORF1ab/nsp84S4LtCatTa11B.1.6280.000352
ORF1ab/nsp84S4LtCatTa11B.1.6340.003425
ORF1ab/nsp84S4StcAtcG11B.1.6370.000073
ORF1ab/nsp84S4LtCatTa11B.400.000364
ORF1ab/nsp84S4LtCatTa11C.160.00106
ORF1ab/nsp84S4LtCatTa11C.190.027027
ORF1ab/nsp84S4delTCA---11N.40.004255
ORF1ab/nsp84S4TTcaAca11P.1.120.000484
ORF1ab/nsp84S4LtCatTa11P.1.150.000232
ORF1ab/nsp84S4LtCatTa11P.1.170.000162
ORF1ab/nsp84S4LtCatTa11P.1.80.004785
ORF1ab/nsp84S4LtCatTa11Q.10.000126