CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 29

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp829G29SG3971SnonsynGgtAgt308308112176-12178
ORF1ab/nsp829G29GG3971GsynggTggC88860.97727312176-12178
ORF1ab/nsp829G29GG3971GsynggTggA8820.022727312176-12178
ORF1ab/nsp829G29CG3971CnonsynGgtTgt1818112176-12178
ORF1ab/nsp829G29VG3971VnonsyngGtgTt1212112176-12178
ORF1ab/nsp829G29DG3971DnonsyngGtgAt99112176-12178
ORF1ab/nsp829G29delG3971deldelGGT---77112176-12178
ORF1ab/nsp829G29AG3971AnonsyngGtgCt760.85714312176-12178
ORF1ab/nsp829G29AG3971AnonsyngGTgCA710.14285712176-12178
ORF1ab/nsp829G29del1G3971del1delGgt-gt630.512176-12178
ORF1ab/nsp829G29del1G3971del1delggTgg-630.512176-12178

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp829G29SGgtAgt308308All0.000059
ORF1ab/nsp829G29GggTggC8688All0.000016
ORF1ab/nsp829G29GggTggA288All0
ORF1ab/nsp829G29SGgtAgt6969B.1.243.21
ORF1ab/nsp829G29SGgtAgt6666C.10.157895
ORF1ab/nsp829G29SGgtAgt3636B.1.1.70.000032
ORF1ab/nsp829G29GggTggC2121AY.250.000126
ORF1ab/nsp829G29SGgtAgt2020AY.40.000031
ORF1ab/nsp829G29CGgtTgt1818All0.000003
ORF1ab/nsp829G29SGgtAgt1717B.1.10.000308
ORF1ab/nsp829G29SGgtAgt1313B.1.20.000114
ORF1ab/nsp829G29VgGtgTt1212All0.000002
ORF1ab/nsp829G29GggTggC1111B.1.1.70.00001
ORF1ab/nsp829G29SGgtAgt1010B.1.1.500.006789
ORF1ab/nsp829G29DgGtgAt99All0.000002
ORF1ab/nsp829G29GggTggC88AY.430.000035
ORF1ab/nsp829G29SGgtAgt88B.1.617.20.00003
ORF1ab/nsp829G29delGGT---77All0.000001
ORF1ab/nsp829G29AgGtgCt67All0.000001
ORF1ab/nsp829G29AgGTgCA17All0
ORF1ab/nsp829G29SGgtAgt77AY.250.000042
ORF1ab/nsp829G29SGgtAgt77B.1.1.4860.011041
ORF1ab/nsp829G29del1ggTgg-36All0.000001
ORF1ab/nsp829G29del1Ggt-gt36All0.000001
ORF1ab/nsp829G29GggTggC66AY.440.000037
ORF1ab/nsp829G29SGgtAgt66B.10.000055
ORF1ab/nsp829G29SGgtAgt66B.1.2430.000418
ORF1ab/nsp829G29GggTggC55AY.40.000008
ORF1ab/nsp829G29SGgtAgt55B.1.1.10.001633
ORF1ab/nsp829G29SGgtAgt44AY.440.000024
ORF1ab/nsp829G29CGgtTgt44AY.930.001092
ORF1ab/nsp829G29CGgtTgt44B.1.3510.000119
ORF1ab/nsp829G29GggTggC44B.1.617.20.000015
ORF1ab/nsp829G29SGgtAgt44P.10.000063
ORF1ab/nsp829G29GggTggC33AY.1030.000019
ORF1ab/nsp829G29GggTggC23AY.30.00002
ORF1ab/nsp829G29GggTggA13AY.30.00001
ORF1ab/nsp829G29GggTggC33AY.50.000062
ORF1ab/nsp829G29VgGtgTt33B.10.000027
ORF1ab/nsp829G29SGgtAgt33B.1.1.370.000579
ORF1ab/nsp829G29GggTggC33B.1.6260.017143
ORF1ab/nsp829G29GggTggC33P.1.70.000958
ORF1ab/nsp829G29SGgtAgt22AY.330.000134
ORF1ab/nsp829G29SGgtAgt22AY.470.000062
ORF1ab/nsp829G29GggTggC22B.10.000018
ORF1ab/nsp829G29del1ggTgg-12B.10.000009
ORF1ab/nsp829G29del1Ggt-gt12B.10.000009
ORF1ab/nsp829G29SGgtAgt22B.1.1.1740.006757
ORF1ab/nsp829G29SGgtAgt22B.1.1.250.001137
ORF1ab/nsp829G29AgGTgCA12B.1.1.70.000001
ORF1ab/nsp829G29AgGtgCt12B.1.1.70.000001
ORF1ab/nsp829G29SGgtAgt22B.1.1600.000062
ORF1ab/nsp829G29GggTggC22B.1.3510.000059
ORF1ab/nsp829G29delGGT---22B.1.617.20.000008
ORF1ab/nsp829G29GggTggC22D.20.00015
ORF1ab/nsp829G29SGgtAgt22P.1.140.000096
ORF1ab/nsp829G29GggTggC22P.20.000373
ORF1ab/nsp829G29GggTggC11AA.70.009174
ORF1ab/nsp829G29GggTggC11AY.1000.000046
ORF1ab/nsp829G29SGgtAgt11AY.1020.000027
ORF1ab/nsp829G29CGgtTgt11AY.1030.000006
ORF1ab/nsp829G29SGgtAgt11AY.1030.000006
ORF1ab/nsp829G29SGgtAgt11AY.1130.000142
ORF1ab/nsp829G29GggTggC11AY.1180.000063
ORF1ab/nsp829G29SGgtAgt11AY.200.000039
ORF1ab/nsp829G29AgGtgCt11AY.250.000006
ORF1ab/nsp829G29VgGtgTt11AY.260.000028
ORF1ab/nsp829G29CGgtTgt11AY.290.000016
ORF1ab/nsp829G29SGgtAgt11AY.30.00001
ORF1ab/nsp829G29DgGtgAt11AY.30.00001
ORF1ab/nsp829G29CGgtTgt11AY.360.000148
ORF1ab/nsp829G29delGGT---11AY.40.000002
ORF1ab/nsp829G29VgGtgTt11AY.40.000002
ORF1ab/nsp829G29SGgtAgt11AY.4.40.000409
ORF1ab/nsp829G29GggTggC11AY.420.00004
ORF1ab/nsp829G29SGgtAgt11AY.430.000004
ORF1ab/nsp829G29CGgtTgt11AY.440.000006
ORF1ab/nsp829G29del1ggTgg-11AY.440.000006
ORF1ab/nsp829G29GggTggC11AY.450.000122
ORF1ab/nsp829G29DgGtgAt11AY.46.50.000198
ORF1ab/nsp829G29GggTggC11AY.470.000031
ORF1ab/nsp829G29DgGtgAt11AY.50.000021
ORF1ab/nsp829G29DgGtgAt11AY.550.000917
ORF1ab/nsp829G29SGgtAgt11AY.650.000533
ORF1ab/nsp829G29AgGtgCt11AY.70.000196
ORF1ab/nsp829G29GggTggC11AY.9.20.000037
ORF1ab/nsp829G29delGGT---11B0.000128
ORF1ab/nsp829G29VgGtgTt11B0.000128
ORF1ab/nsp829G29DgGtgAt11B.10.000009
ORF1ab/nsp829G29delGGT---11B.10.000009
ORF1ab/nsp829G29CGgtTgt11B.10.000009
ORF1ab/nsp829G29AgGtgCt11B.1.10.000018
ORF1ab/nsp829G29GggTggC11B.1.1.1740.003378
ORF1ab/nsp829G29CGgtTgt11B.1.1.1740.003378
ORF1ab/nsp829G29CGgtTgt11B.1.1.2280.003049
ORF1ab/nsp829G29GggTggA11B.1.1.280.000311
ORF1ab/nsp829G29SGgtAgt11B.1.1.3720.000689
ORF1ab/nsp829G29CGgtTgt11B.1.1.630.000386
ORF1ab/nsp829G29DgGtgAt11B.1.1.630.000386
ORF1ab/nsp829G29delGGT---11B.1.1.70.000001
ORF1ab/nsp829G29VgGtgTt11B.1.1.70.000001
ORF1ab/nsp829G29SGgtAgt11B.1.1770.000013
ORF1ab/nsp829G29GggTggC11B.1.1770.000013
ORF1ab/nsp829G29SGgtAgt11B.1.177.730.000566
ORF1ab/nsp829G29DgGtgAt11B.1.20.000009
ORF1ab/nsp829G29VgGtgTt11B.1.20.000009
ORF1ab/nsp829G29SGgtAgt11B.1.2100.002132
ORF1ab/nsp829G29CGgtTgt11B.1.2210.000071
ORF1ab/nsp829G29SGgtAgt11B.1.2980.002114
ORF1ab/nsp829G29VgGtgTt11B.1.3050.002151
ORF1ab/nsp829G29DgGtgAt11B.1.3690.000285
ORF1ab/nsp829G29CGgtTgt11B.1.3690.000285
ORF1ab/nsp829G29DgGtgAt11B.1.3980.002976
ORF1ab/nsp829G29VgGtgTt11B.1.4590.004082
ORF1ab/nsp829G29del1Ggt-gt11B.1.5460.003704
ORF1ab/nsp829G29AgGtgCt11B.1.617.20.000004
ORF1ab/nsp829G29del1Ggt-gt11B.1.617.20.000004
ORF1ab/nsp829G29SGgtAgt11B.1.6190.000871
ORF1ab/nsp829G29AgGtgCt11C.170.055556
ORF1ab/nsp829G29VgGtgTt11C.350.000774
ORF1ab/nsp829G29VgGtgTt11D.20.000075
ORF1ab/nsp829G29delGGT---11N.40.004255
ORF1ab/nsp829G29SGgtAgt11P.1.120.000484
ORF1ab/nsp829G29del1ggTgg-11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.