CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 24 | Q24R | Q3966R | nonsyn | cAg | cGg | 70188 | 70177 | 0.999843 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24R | Q3966R | nonsyn | cAG | cGT | 70188 | 9 | 0.000128227 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24R | Q3966R | nonsyn | cAG | cGA | 70188 | 2 | 0.0000284949 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24H | Q3966H | nonsyn | caG | caT | 1473 | 1467 | 0.995927 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24H | Q3966H | nonsyn | caG | caC | 1473 | 6 | 0.00407332 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24Q | Q3966Q | syn | caG | caA | 1078 | 1078 | 1 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24K | Q3966K | nonsyn | Cag | Aag | 201 | 201 | 1 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24E | Q3966E | nonsyn | CaG | GaA | 141 | 140 | 0.992908 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24E | Q3966E | nonsyn | Cag | Gag | 141 | 1 | 0.0070922 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24L | Q3966L | nonsyn | cAg | cTg | 52 | 52 | 1 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24del1 | Q3966del1 | del | cAg | c-g | 16 | 15 | 0.9375 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24del1 | Q3966del1 | del | caG | ca- | 16 | 1 | 0.0625 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24del | Q3966del | del | CAG | --- | 4 | 4 | 1 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24A | Q3966A | nonsyn | CAg | GCg | 2 | 2 | 1 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24W | Q3966W | nonsyn | CAg | TGg | 2 | 2 | 1 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24P | Q3966P | nonsyn | cAG | cCC | 2 | 1 | 0.5 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24P | Q3966P | nonsyn | cAg | cCg | 2 | 1 | 0.5 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24X | Q3966X | nonsyn | Cag | Tag | 1 | 1 | 1 | 12161-12163 |
ORF1ab/nsp8 | 24 | Q24Y | Q3966Y | nonsyn | CaG | TaT | 1 | 1 | 1 | 12161-12163 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 70177 | 70188 | All | 0.013422 |
ORF1ab/nsp8 | 24 | Q24R | cAG | cGT | 9 | 70188 | All | 0.000002 |
ORF1ab/nsp8 | 24 | Q24R | cAG | cGA | 2 | 70188 | All | 0 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 66134 | 66145 | B.1.1.7 | 0.059205 |
ORF1ab/nsp8 | 24 | Q24R | cAG | cGT | 9 | 66145 | B.1.1.7 | 0.000008 |
ORF1ab/nsp8 | 24 | Q24R | cAG | cGA | 2 | 66145 | B.1.1.7 | 0.000002 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2119 | 2119 | Q.4 | 0.96362 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1467 | 1473 | All | 0.000281 |
ORF1ab/nsp8 | 24 | Q24H | caG | caC | 6 | 1473 | All | 0.000001 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1078 | 1078 | All | 0.000206 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 906 | 906 | B.1.637 | 0.066204 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 891 | 891 | Q.8 | 0.146933 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 518 | 518 | B.1.596 | 0.045138 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 201 | 201 | All | 0.000038 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 158 | 158 | B.1.351 | 0.004697 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 157 | 157 | AY.86 | 0.13029 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 148 | 148 | P.1.14 | 0.007075 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 145 | 145 | B.1.1 | 0.00263 |
ORF1ab/nsp8 | 24 | Q24E | CaG | GaA | 140 | 141 | All | 0.000027 |
ORF1ab/nsp8 | 24 | Q24E | Cag | Gag | 1 | 141 | All | 0 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 141 | 141 | P.1 | 0.002221 |
ORF1ab/nsp8 | 24 | Q24E | CaG | GaA | 137 | 137 | B.1.429 | 0.003223 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 131 | 131 | AY.4 | 0.000204 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 119 | 119 | AY.25 | 0.000716 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 93 | 93 | B.1 | 0.000852 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 84 | 84 | AY.103 | 0.000522 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 72 | 72 | B.1 | 0.000659 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 59 | 59 | C.36 | 0.053734 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 53 | 54 | B.1.1.7 | 0.000047 |
ORF1ab/nsp8 | 24 | Q24H | caG | caC | 1 | 54 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 52 | 52 | All | 0.00001 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 42 | 42 | B.1.526 | 0.000987 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 39 | 39 | AY.4 | 0.000061 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 39 | 39 | B.1.617.2 | 0.000147 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 38 | 38 | AY.44 | 0.000231 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 37 | 37 | B.1.1.7 | 0.000033 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 30 | 30 | AY.20 | 0.001166 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 30 | 30 | B.1.497 | 0.009443 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 28 | 28 | B.1.221 | 0.001989 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 26 | 26 | AY.103 | 0.000161 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 16 | 17 | AY.44 | 0.000097 |
ORF1ab/nsp8 | 24 | Q24H | caG | caC | 1 | 17 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 17 | 17 | Q.1 | 0.002148 |
ORF1ab/nsp8 | 24 | Q24del1 | cAg | c-g | 15 | 16 | All | 0.000003 |
ORF1ab/nsp8 | 24 | Q24del1 | caG | ca- | 1 | 16 | All | 0 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 16 | 16 | B.1.177.75 | 0.016649 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 16 | 16 | B.1.93 | 0.014939 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp8 | 24 | Q24del1 | cAg | c-g | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 14 | 14 | B.1.628 | 0.004933 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 13 | 13 | AY.20 | 0.000505 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 12 | 12 | B.1.1.214 | 0.000665 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 11 | 11 | B.1.177.73 | 0.006229 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 7 | 7 | B.1.565 | 0.005673 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 7 | 7 | C.36.3 | 0.003971 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 5 | 5 | AY.101 | 0.002452 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp8 | 24 | Q24del | CAG | --- | 4 | 4 | All | 0.000001 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 4 | 4 | B | 0.000511 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 4 | 4 | B.1.375 | 0.003279 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 4 | 4 | B.1.576 | 0.003626 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp8 | 24 | Q24E | CaG | GaA | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 3 | 3 | B.1.436 | 0.003086 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 2 | 3 | D.2 | 0.00015 |
ORF1ab/nsp8 | 24 | Q24H | caG | caC | 1 | 3 | D.2 | 0.000075 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp8 | 24 | Q24H | caG | caC | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp8 | 24 | Q24W | CAg | TGg | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 24 | Q24A | CAg | GCg | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 24 | Q24P | cAg | cCg | 1 | 2 | All | 0 |
ORF1ab/nsp8 | 24 | Q24P | cAG | cCC | 1 | 2 | All | 0 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp8 | 24 | Q24H | caG | caC | 1 | 2 | AY.108 | 0.001103 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 2 | AY.108 | 0.001103 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 2 | 2 | B.1.1.412 | 0.015267 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp8 | 24 | Q24A | CAg | GCg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp8 | 24 | Q24P | cAG | cCC | 1 | 2 | B.1.369 | 0.000285 |
ORF1ab/nsp8 | 24 | Q24P | cAg | cCg | 1 | 2 | B.1.369 | 0.000285 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 2 | B.1.369 | 0.000285 |
ORF1ab/nsp8 | 24 | Q24H | caG | caC | 1 | 2 | B.1.369 | 0.000285 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp8 | 24 | Q24W | CAg | TGg | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp8 | 24 | Q24Y | CaG | TaT | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 24 | Q24X | Cag | Tag | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp8 | 24 | Q24E | Cag | Gag | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp8 | 24 | Q24del | CAG | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp8 | 24 | Q24del | CAG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 24 | Q24X | Cag | Tag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp8 | 24 | Q24del | CAG | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp8 | 24 | Q24K | Cag | Aag | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp8 | 24 | Q24Y | CaG | TaT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp8 | 24 | Q24L | cAg | cTg | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | B.4.7 | 0.010101 |
ORF1ab/nsp8 | 24 | Q24del1 | caG | ca- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp8 | 24 | Q24del | CAG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp8 | 24 | Q24Q | caG | caA | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp8 | 24 | Q24del1 | cAg | c-g | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | Q.5 | 0.016949 |
ORF1ab/nsp8 | 24 | Q24H | caG | caT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp8 | 24 | Q24R | cAg | cGg | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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