CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 24

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp824Q24RQ3966RnonsyncAgcGg70188701770.99984312161-12163
ORF1ab/nsp824Q24RQ3966RnonsyncAGcGT7018890.00012822712161-12163
ORF1ab/nsp824Q24RQ3966RnonsyncAGcGA7018820.000028494912161-12163
ORF1ab/nsp824Q24HQ3966HnonsyncaGcaT147314670.99592712161-12163
ORF1ab/nsp824Q24HQ3966HnonsyncaGcaC147360.0040733212161-12163
ORF1ab/nsp824Q24QQ3966QsyncaGcaA10781078112161-12163
ORF1ab/nsp824Q24KQ3966KnonsynCagAag201201112161-12163
ORF1ab/nsp824Q24EQ3966EnonsynCaGGaA1411400.99290812161-12163
ORF1ab/nsp824Q24EQ3966EnonsynCagGag14110.007092212161-12163
ORF1ab/nsp824Q24LQ3966LnonsyncAgcTg5252112161-12163
ORF1ab/nsp824Q24del1Q3966del1delcAgc-g16150.937512161-12163
ORF1ab/nsp824Q24del1Q3966del1delcaGca-1610.062512161-12163
ORF1ab/nsp824Q24delQ3966deldelCAG---44112161-12163
ORF1ab/nsp824Q24AQ3966AnonsynCAgGCg22112161-12163
ORF1ab/nsp824Q24WQ3966WnonsynCAgTGg22112161-12163
ORF1ab/nsp824Q24PQ3966PnonsyncAGcCC210.512161-12163
ORF1ab/nsp824Q24PQ3966PnonsyncAgcCg210.512161-12163
ORF1ab/nsp824Q24XQ3966XnonsynCagTag11112161-12163
ORF1ab/nsp824Q24YQ3966YnonsynCaGTaT11112161-12163

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp824Q24RcAgcGg7017770188All0.013422
ORF1ab/nsp824Q24RcAGcGT970188All0.000002
ORF1ab/nsp824Q24RcAGcGA270188All0
ORF1ab/nsp824Q24RcAgcGg6613466145B.1.1.70.059205
ORF1ab/nsp824Q24RcAGcGT966145B.1.1.70.000008
ORF1ab/nsp824Q24RcAGcGA266145B.1.1.70.000002
ORF1ab/nsp824Q24RcAgcGg21192119Q.40.96362
ORF1ab/nsp824Q24HcaGcaT14671473All0.000281
ORF1ab/nsp824Q24HcaGcaC61473All0.000001
ORF1ab/nsp824Q24QcaGcaA10781078All0.000206
ORF1ab/nsp824Q24HcaGcaT906906B.1.6370.066204
ORF1ab/nsp824Q24RcAgcGg891891Q.80.146933
ORF1ab/nsp824Q24QcaGcaA518518B.1.5960.045138
ORF1ab/nsp824Q24KCagAag201201All0.000038
ORF1ab/nsp824Q24RcAgcGg158158B.1.3510.004697
ORF1ab/nsp824Q24HcaGcaT157157AY.860.13029
ORF1ab/nsp824Q24RcAgcGg148148P.1.140.007075
ORF1ab/nsp824Q24RcAgcGg145145B.1.10.00263
ORF1ab/nsp824Q24ECaGGaA140141All0.000027
ORF1ab/nsp824Q24ECagGag1141All0
ORF1ab/nsp824Q24RcAgcGg141141P.10.002221
ORF1ab/nsp824Q24ECaGGaA137137B.1.4290.003223
ORF1ab/nsp824Q24KCagAag131131AY.40.000204
ORF1ab/nsp824Q24QcaGcaA119119AY.250.000716
ORF1ab/nsp824Q24RcAgcGg9393B.10.000852
ORF1ab/nsp824Q24QcaGcaA8484AY.1030.000522
ORF1ab/nsp824Q24HcaGcaT7272B.10.000659
ORF1ab/nsp824Q24QcaGcaA5959C.360.053734
ORF1ab/nsp824Q24HcaGcaT5354B.1.1.70.000047
ORF1ab/nsp824Q24HcaGcaC154B.1.1.70.000001
ORF1ab/nsp824Q24LcAgcTg5252All0.00001
ORF1ab/nsp824Q24QcaGcaA4242B.1.5260.000987
ORF1ab/nsp824Q24RcAgcGg3939AY.40.000061
ORF1ab/nsp824Q24QcaGcaA3939B.1.617.20.000147
ORF1ab/nsp824Q24RcAgcGg3838AY.440.000231
ORF1ab/nsp824Q24QcaGcaA3737B.1.1.70.000033
ORF1ab/nsp824Q24RcAgcGg3030AY.200.001166
ORF1ab/nsp824Q24QcaGcaA3030B.1.4970.009443
ORF1ab/nsp824Q24HcaGcaT2929B.1.617.20.000109
ORF1ab/nsp824Q24KCagAag2828B.1.2210.001989
ORF1ab/nsp824Q24HcaGcaT2626AY.1030.000161
ORF1ab/nsp824Q24HcaGcaT2525AY.40.000039
ORF1ab/nsp824Q24KCagAag1919B.1.1.70.000017
ORF1ab/nsp824Q24QcaGcaA1818AY.40.000028
ORF1ab/nsp824Q24HcaGcaT1617AY.440.000097
ORF1ab/nsp824Q24HcaGcaC117AY.440.000006
ORF1ab/nsp824Q24RcAgcGg1717Q.10.002148
ORF1ab/nsp824Q24del1cAgc-g1516All0.000003
ORF1ab/nsp824Q24del1caGca-116All0
ORF1ab/nsp824Q24HcaGcaT1616B.1.177.750.016649
ORF1ab/nsp824Q24QcaGcaA1616B.1.930.014939
ORF1ab/nsp824Q24HcaGcaT1414AY.250.000084
ORF1ab/nsp824Q24del1cAgc-g1414B.1.1.70.000013
ORF1ab/nsp824Q24RcAgcGg1414B.1.617.20.000053
ORF1ab/nsp824Q24HcaGcaT1414B.1.6280.004933
ORF1ab/nsp824Q24QcaGcaA1313AY.200.000505
ORF1ab/nsp824Q24HcaGcaT1313AY.30.000129
ORF1ab/nsp824Q24LcAgcTg1313B.1.1.70.000012
ORF1ab/nsp824Q24HcaGcaT1212AY.1000.000552
ORF1ab/nsp824Q24RcAgcGg1212B.1.1.2140.000665
ORF1ab/nsp824Q24RcAgcGg1111B.1.177.730.006229
ORF1ab/nsp824Q24RcAgcGg1111B.1.20.000097
ORF1ab/nsp824Q24QcaGcaA1111B.1.20.000097
ORF1ab/nsp824Q24QcaGcaA1010AY.1020.000265
ORF1ab/nsp824Q24HcaGcaT99AY.430.00004
ORF1ab/nsp824Q24QcaGcaA99B.1.10.000163
ORF1ab/nsp824Q24RcAgcGg99B.1.5260.000212
ORF1ab/nsp824Q24QcaGcaA99P.10.000142
ORF1ab/nsp824Q24RcAgcGg88AY.30.00008
ORF1ab/nsp824Q24HcaGcaT88B.1.10.000145
ORF1ab/nsp824Q24LcAgcTg88B.1.617.20.00003
ORF1ab/nsp824Q24KCagAag88P.10.000126
ORF1ab/nsp824Q24QcaGcaA77AY.1210.000947
ORF1ab/nsp824Q24RcAgcGg77AY.250.000042
ORF1ab/nsp824Q24QcaGcaA77B.1.1600.000218
ORF1ab/nsp824Q24HcaGcaT77B.1.5650.005673
ORF1ab/nsp824Q24LcAgcTg77C.36.30.003971
ORF1ab/nsp824Q24RcAgcGg77Q.30.001015
ORF1ab/nsp824Q24RcAgcGg66AY.1020.000159
ORF1ab/nsp824Q24HcaGcaT66AY.420.000241
ORF1ab/nsp824Q24QcaGcaA66AY.440.000037
ORF1ab/nsp824Q24HcaGcaT66B.1.20.000053
ORF1ab/nsp824Q24RcAgcGg66B.1.5960.000523
ORF1ab/nsp824Q24HcaGcaT55AY.1010.002452
ORF1ab/nsp824Q24RcAgcGg55AY.1190.000177
ORF1ab/nsp824Q24LcAgcTg55AY.440.00003
ORF1ab/nsp824Q24RcAgcGg55AY.540.000477
ORF1ab/nsp824Q24HcaGcaT55B.1.1.5190.000199
ORF1ab/nsp824Q24RcAgcGg55B.1.1770.000066
ORF1ab/nsp824Q24RcAgcGg55P.1.70.001596
ORF1ab/nsp824Q24delCAG---44All0.000001
ORF1ab/nsp824Q24QcaGcaA44AY.430.000018
ORF1ab/nsp824Q24HcaGcaT44AY.450.000487
ORF1ab/nsp824Q24HcaGcaT44AY.99.20.000369
ORF1ab/nsp824Q24RcAgcGg44B0.000511
ORF1ab/nsp824Q24QcaGcaA44B.10.000037
ORF1ab/nsp824Q24QcaGcaA44B.1.1.2140.000222
ORF1ab/nsp824Q24HcaGcaT44B.1.1600.000125
ORF1ab/nsp824Q24RcAgcGg44B.1.2580.000266
ORF1ab/nsp824Q24RcAgcGg44B.1.3750.003279
ORF1ab/nsp824Q24RcAgcGg44B.1.5760.003626
ORF1ab/nsp824Q24RcAgcGg44D.20.0003
ORF1ab/nsp824Q24KCagAag33AY.1160.00086
ORF1ab/nsp824Q24RcAgcGg33AY.260.000085
ORF1ab/nsp824Q24HcaGcaT33AY.390.000074
ORF1ab/nsp824Q24RcAgcGg33AY.430.000013
ORF1ab/nsp824Q24QcaGcaA33AY.470.000093
ORF1ab/nsp824Q24RcAgcGg33AY.610.000314
ORF1ab/nsp824Q24LcAgcTg33B.1.1.630.001157
ORF1ab/nsp824Q24QcaGcaA33B.1.177.600.000655
ORF1ab/nsp824Q24ECaGGaA33B.1.4270.000151
ORF1ab/nsp824Q24RcAgcGg33B.1.4360.003086
ORF1ab/nsp824Q24HcaGcaT33B.1.5260.000071
ORF1ab/nsp824Q24RcAgcGg33B.1.6210.000266
ORF1ab/nsp824Q24RcAgcGg33C.370.000348
ORF1ab/nsp824Q24HcaGcaT23D.20.00015
ORF1ab/nsp824Q24HcaGcaC13D.20.000075
ORF1ab/nsp824Q24HcaGcaT23P.10.000032
ORF1ab/nsp824Q24HcaGcaC13P.10.000016
ORF1ab/nsp824Q24LcAgcTg33Q.10.000379
ORF1ab/nsp824Q24WCAgTGg22All0
ORF1ab/nsp824Q24ACAgGCg22All0
ORF1ab/nsp824Q24PcAgcCg12All0
ORF1ab/nsp824Q24PcAGcCC12All0
ORF1ab/nsp824Q24RcAgcGg22AY.1000.000092
ORF1ab/nsp824Q24KCagAag22AY.1000.000092
ORF1ab/nsp824Q24RcAgcGg22AY.1030.000012
ORF1ab/nsp824Q24HcaGcaT22AY.1070.000932
ORF1ab/nsp824Q24HcaGcaC12AY.1080.001103
ORF1ab/nsp824Q24HcaGcaT12AY.1080.001103
ORF1ab/nsp824Q24QcaGcaA22AY.1130.000285
ORF1ab/nsp824Q24QcaGcaA22AY.1190.000071
ORF1ab/nsp824Q24HcaGcaT22AY.240.000862
ORF1ab/nsp824Q24HcaGcaT22AY.270.000129
ORF1ab/nsp824Q24RcAgcGg22AY.290.000032
ORF1ab/nsp824Q24QcaGcaA22AY.30.00002
ORF1ab/nsp824Q24LcAgcTg22AY.390.000049
ORF1ab/nsp824Q24LcAgcTg22AY.430.000009
ORF1ab/nsp824Q24RcAgcGg22AY.460.000208
ORF1ab/nsp824Q24HcaGcaT22AY.46.20.001271
ORF1ab/nsp824Q24KCagAag22AY.570.001312
ORF1ab/nsp824Q24RcAgcGg22AY.750.000112
ORF1ab/nsp824Q24HcaGcaT22B.1.1.2070.002364
ORF1ab/nsp824Q24HcaGcaT22B.1.1.250.001137
ORF1ab/nsp824Q24RcAgcGg22B.1.1.3120.003824
ORF1ab/nsp824Q24HcaGcaT22B.1.1.4120.015267
ORF1ab/nsp824Q24RcAgcGg22B.1.1.4340.000697
ORF1ab/nsp824Q24RcAgcGg22B.1.1.5190.000079
ORF1ab/nsp824Q24QcaGcaA22B.1.1.5280.009615
ORF1ab/nsp824Q24RcAgcGg22B.1.1.5280.009615
ORF1ab/nsp824Q24ACAgGCg22B.1.1.70.000002
ORF1ab/nsp824Q24RcAgcGg22B.1.1600.000062
ORF1ab/nsp824Q24RcAgcGg22B.1.177.70.00033
ORF1ab/nsp824Q24HcaGcaT22B.1.177.70.00033
ORF1ab/nsp824Q24RcAgcGg22B.1.2210.000142
ORF1ab/nsp824Q24KCagAag22B.1.2580.000133
ORF1ab/nsp824Q24HcaGcaT22B.1.3360.004878
ORF1ab/nsp824Q24QcaGcaA22B.1.360.000292
ORF1ab/nsp824Q24PcAGcCC12B.1.3690.000285
ORF1ab/nsp824Q24PcAgcCg12B.1.3690.000285
ORF1ab/nsp824Q24HcaGcaT12B.1.3690.000285
ORF1ab/nsp824Q24HcaGcaC12B.1.3690.000285
ORF1ab/nsp824Q24RcAgcGg22B.1.4270.000101
ORF1ab/nsp824Q24RcAgcGg22B.1.5750.000607
ORF1ab/nsp824Q24KCagAag22B.1.617.20.000008
ORF1ab/nsp824Q24LcAgcTg22P.10.000032
ORF1ab/nsp824Q24RcAgcGg22P.1.10.000635
ORF1ab/nsp824Q24RcAgcGg22P.1.150.000465
ORF1ab/nsp824Q24WCAgTGg22Q.40.00091
ORF1ab/nsp824Q24YCaGTaT11All0
ORF1ab/nsp824Q24XCagTag11All0
ORF1ab/nsp824Q24LcAgcTg11AY.1020.000027
ORF1ab/nsp824Q24HcaGcaT11AY.1020.000027
ORF1ab/nsp824Q24HcaGcaT11AY.1110.000183
ORF1ab/nsp824Q24RcAgcGg11AY.120.000316
ORF1ab/nsp824Q24RcAgcGg11AY.1200.000037
ORF1ab/nsp824Q24QcaGcaA11AY.20.000356
ORF1ab/nsp824Q24HcaGcaT11AY.23.10.000417
ORF1ab/nsp824Q24HcaGcaT11AY.260.000028
ORF1ab/nsp824Q24QcaGcaA11AY.260.000028
ORF1ab/nsp824Q24HcaGcaT11AY.290.000016
ORF1ab/nsp824Q24QcaGcaA11AY.290.000016
ORF1ab/nsp824Q24RcAgcGg11AY.340.000097
ORF1ab/nsp824Q24QcaGcaA11AY.350.000233
ORF1ab/nsp824Q24KCagAag11AY.390.000025
ORF1ab/nsp824Q24RcAgcGg11AY.390.000025
ORF1ab/nsp824Q24LcAgcTg11AY.40.000002
ORF1ab/nsp824Q24HcaGcaT11AY.4.20.000022
ORF1ab/nsp824Q24LcAgcTg11AY.4.30.000842
ORF1ab/nsp824Q24HcaGcaT11AY.4.50.000107
ORF1ab/nsp824Q24RcAgcGg11AY.420.00004
ORF1ab/nsp824Q24ECagGag11AY.430.000004
ORF1ab/nsp824Q24KCagAag11AY.440.000006
ORF1ab/nsp824Q24HcaGcaT11AY.460.000104
ORF1ab/nsp824Q24RcAgcGg11AY.46.40.000165
ORF1ab/nsp824Q24RcAgcGg11AY.46.60.000072
ORF1ab/nsp824Q24HcaGcaT11AY.50.000021
ORF1ab/nsp824Q24HcaGcaT11AY.540.000095
ORF1ab/nsp824Q24QcaGcaA11AY.550.000917
ORF1ab/nsp824Q24RcAgcGg11AY.60.000041
ORF1ab/nsp824Q24RcAgcGg11AY.740.000116
ORF1ab/nsp824Q24HcaGcaT11AY.870.000833
ORF1ab/nsp824Q24QcaGcaA11AY.90.000068
ORF1ab/nsp824Q24QcaGcaA11AY.980.000079
ORF1ab/nsp824Q24KCagAag11AY.980.000079
ORF1ab/nsp824Q24QcaGcaA11B0.000128
ORF1ab/nsp824Q24delCAG---11B0.000128
ORF1ab/nsp824Q24delCAG---11B.10.000009
ORF1ab/nsp824Q24XCagTag11B.10.000009
ORF1ab/nsp824Q24LcAgcTg11B.1.10.000018
ORF1ab/nsp824Q24RcAgcGg11B.1.1.2220.000204
ORF1ab/nsp824Q24HcaGcaT11B.1.1.280.000311
ORF1ab/nsp824Q24RcAgcGg11B.1.1.2800.003086
ORF1ab/nsp824Q24RcAgcGg11B.1.1.3030.002762
ORF1ab/nsp824Q24HcaGcaT11B.1.1.370.000193
ORF1ab/nsp824Q24HcaGcaT11B.1.1.390.00051
ORF1ab/nsp824Q24RcAgcGg11B.1.1.390.00051
ORF1ab/nsp824Q24HcaGcaT11B.1.1.4020.011111
ORF1ab/nsp824Q24RcAgcGg11B.1.1.4090.002833
ORF1ab/nsp824Q24RcAgcGg11B.1.1.4330.001425
ORF1ab/nsp824Q24RcAgcGg11B.1.1.5070.008696
ORF1ab/nsp824Q24HcaGcaT11B.1.1.5250.005464
ORF1ab/nsp824Q24delCAG---11B.1.1.70.000001
ORF1ab/nsp824Q24RcAgcGg11B.1.1.700.000341
ORF1ab/nsp824Q24RcAgcGg11B.1.1390.000733
ORF1ab/nsp824Q24QcaGcaA11B.1.1770.000013
ORF1ab/nsp824Q24HcaGcaT11B.1.177.500.004695
ORF1ab/nsp824Q24RcAgcGg11B.1.177.60.000977
ORF1ab/nsp824Q24RcAgcGg11B.1.177.860.000183
ORF1ab/nsp824Q24HcaGcaT11B.1.2210.000071
ORF1ab/nsp824Q24RcAgcGg11B.1.2430.00007
ORF1ab/nsp824Q24HcaGcaT11B.1.258.170.000104
ORF1ab/nsp824Q24HcaGcaT11B.1.3380.008621
ORF1ab/nsp824Q24HcaGcaT11B.1.351.30.000876
ORF1ab/nsp824Q24RcAgcGg11B.1.36.100.004785
ORF1ab/nsp824Q24QcaGcaA11B.1.36.170.000494
ORF1ab/nsp824Q24RcAgcGg11B.1.36.70.004
ORF1ab/nsp824Q24HcaGcaT11B.1.4000.000429
ORF1ab/nsp824Q24QcaGcaA11B.1.4000.000429
ORF1ab/nsp824Q24RcAgcGg11B.1.4110.003704
ORF1ab/nsp824Q24LcAgcTg11B.1.4290.000024
ORF1ab/nsp824Q24RcAgcGg11B.1.438.10.000107
ORF1ab/nsp824Q24RcAgcGg11B.1.4970.000315
ORF1ab/nsp824Q24RcAgcGg11B.1.5250.000113
ORF1ab/nsp824Q24LcAgcTg11B.1.5610.000397
ORF1ab/nsp824Q24RcAgcGg11B.1.5950.000261
ORF1ab/nsp824Q24QcaGcaA11B.1.5950.000261
ORF1ab/nsp824Q24RcAgcGg11B.1.6090.000479
ORF1ab/nsp824Q24KCagAag11B.1.6120.002653
ORF1ab/nsp824Q24RcAgcGg11B.1.617.10.000129
ORF1ab/nsp824Q24RcAgcGg11B.1.6230.000536
ORF1ab/nsp824Q24RcAgcGg11B.1.6250.002353
ORF1ab/nsp824Q24RcAgcGg11B.1.6270.00202
ORF1ab/nsp824Q24YCaGTaT11B.1.6280.000352
ORF1ab/nsp824Q24RcAgcGg11B.1.6280.000352
ORF1ab/nsp824Q24RcAgcGg11B.1.6320.006711
ORF1ab/nsp824Q24RcAgcGg11B.1.6370.000073
ORF1ab/nsp824Q24LcAgcTg11B.30.000831
ORF1ab/nsp824Q24HcaGcaT11B.4.70.010101
ORF1ab/nsp824Q24del1caGca-11C.170.055556
ORF1ab/nsp824Q24QcaGcaA11C.170.055556
ORF1ab/nsp824Q24RcAgcGg11C.37.10.002618
ORF1ab/nsp824Q24delCAG---11N.40.004255
ORF1ab/nsp824Q24RcAgcGg11P.1.100.000269
ORF1ab/nsp824Q24RcAgcGg11P.1.120.000484
ORF1ab/nsp824Q24QcaGcaA11P.1.140.000048
ORF1ab/nsp824Q24QcaGcaA11P.1.150.000232
ORF1ab/nsp824Q24RcAgcGg11P.1.170.000162
ORF1ab/nsp824Q24HcaGcaT11P.1.170.000162
ORF1ab/nsp824Q24QcaGcaA11P.1.20.001156
ORF1ab/nsp824Q24RcAgcGg11P.20.000187
ORF1ab/nsp824Q24HcaGcaT11Q.30.000145
ORF1ab/nsp824Q24del1cAgc-g11Q.40.000455
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