CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 190 | R190R | R4132R | syn | agG | agA | 812 | 793 | 0.976601 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190R | R4132R | syn | Agg | Cgg | 812 | 19 | 0.023399 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190K | R4132K | nonsyn | aGg | aAg | 44 | 44 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190P | R4132P | nonsyn | AGG | CCT | 25 | 25 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190del | R4132del | del | AGG | --- | 12 | 12 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190M | R4132M | nonsyn | aGg | aTg | 12 | 12 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190S | R4132S | nonsyn | agG | agT | 9 | 9 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190G | R4132G | nonsyn | Agg | Ggg | 8 | 6 | 0.75 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190G | R4132G | nonsyn | AgG | GgT | 8 | 2 | 0.25 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190C | R4132C | nonsyn | AgG | TgT | 4 | 4 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190E | R4132E | nonsyn | AGg | GAg | 3 | 3 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190W | R4132W | nonsyn | Agg | Tgg | 3 | 3 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190L | R4132L | nonsyn | AGG | TTA | 2 | 2 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190V | R4132V | nonsyn | AGG | GTT | 2 | 2 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190F | R4132F | nonsyn | AGG | TTT | 2 | 2 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190T | R4132T | nonsyn | aGG | aCA | 2 | 1 | 0.5 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190T | R4132T | nonsyn | aGg | aCg | 2 | 1 | 0.5 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190Q | R4132Q | nonsyn | AGg | CAg | 1 | 1 | 1 | 12659-12661 |
ORF1ab/nsp8 | 190 | R190del1 | R4132del1 | del | aGg | a-g | 1 | 1 | 1 | 12659-12661 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 793 | 812 | All | 0.000152 |
ORF1ab/nsp8 | 190 | R190R | Agg | Cgg | 19 | 812 | All | 0.000004 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 136 | 136 | C.26 | 1 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 83 | 90 | B.1.1.7 | 0.000074 |
ORF1ab/nsp8 | 190 | R190R | Agg | Cgg | 7 | 90 | B.1.1.7 | 0.000006 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 69 | 69 | B.1.2 | 0.000608 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 44 | 44 | All | 0.000008 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 37 | 42 | AY.3 | 0.000368 |
ORF1ab/nsp8 | 190 | R190R | Agg | Cgg | 5 | 42 | AY.3 | 0.00005 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 42 | 42 | AY.44 | 0.000256 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 42 | 42 | B.1.617.2 | 0.000158 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 33 | 36 | AY.4 | 0.000051 |
ORF1ab/nsp8 | 190 | R190R | Agg | Cgg | 3 | 36 | AY.4 | 0.000005 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 30 | 30 | AP.1 | 0.045045 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 25 | 25 | All | 0.000005 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 22 | 22 | P.1 | 0.000347 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 17 | 17 | B.1.429 | 0.0004 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 15 | 16 | AY.25 | 0.00009 |
ORF1ab/nsp8 | 190 | R190R | Agg | Cgg | 1 | 16 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 13 | 13 | C.16 | 0.013786 |
ORF1ab/nsp8 | 190 | R190del | AGG | --- | 12 | 12 | All | 0.000002 |
ORF1ab/nsp8 | 190 | R190M | aGg | aTg | 12 | 12 | All | 0.000002 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 11 | 11 | B.1.637 | 0.000804 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp8 | 190 | R190S | agG | agT | 9 | 9 | All | 0.000002 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp8 | 190 | R190G | Agg | Ggg | 6 | 8 | All | 0.000001 |
ORF1ab/nsp8 | 190 | R190G | AgG | GgT | 2 | 8 | All | 0 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 6 | 6 | AY.10 | 0.00318 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 6 | 6 | Q.3 | 0.00087 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp8 | 190 | R190M | aGg | aTg | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 5 | 5 | B.1.480 | 0.012438 |
ORF1ab/nsp8 | 190 | R190C | AgG | TgT | 4 | 4 | 0.222222 | |
ORF1ab/nsp8 | 190 | R190S | agG | agT | 4 | 4 | 0.222222 | |
ORF1ab/nsp8 | 190 | R190C | AgG | TgT | 4 | 4 | All | 0.000001 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp8 | 190 | R190del | AGG | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 3 | 3 | A.2 | 0.001985 |
ORF1ab/nsp8 | 190 | R190W | Agg | Tgg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp8 | 190 | R190E | AGg | GAg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp8 | 190 | R190G | AgG | GgT | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 190 | R190V | AGG | GTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 190 | R190F | AGG | TTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 190 | R190F | AGG | TTT | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 190 | R190V | AGG | GTT | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 190 | R190L | AGG | TTA | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 190 | R190T | aGg | aCg | 1 | 2 | All | 0 |
ORF1ab/nsp8 | 190 | R190T | aGG | aCA | 1 | 2 | All | 0 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp8 | 190 | R190W | Agg | Tgg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp8 | 190 | R190M | aGg | aTg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp8 | 190 | R190G | Agg | Ggg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp8 | 190 | R190M | aGg | aTg | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp8 | 190 | R190T | aGg | aCg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp8 | 190 | R190Q | AGg | CAg | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 190 | R190del1 | aGg | a-g | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp8 | 190 | R190del | AGG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp8 | 190 | R190del | AGG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 190 | R190M | aGg | aTg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 190 | R190del | AGG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp8 | 190 | R190E | AGg | GAg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 190 | R190G | Agg | Ggg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp8 | 190 | R190R | Agg | Cgg | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp8 | 190 | R190E | AGg | GAg | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp8 | 190 | R190E | AGg | GAg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp8 | 190 | R190G | Agg | Ggg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp8 | 190 | R190P | AGG | CCT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp8 | 190 | R190del | AGG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 190 | R190Q | AGg | CAg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 190 | R190S | agG | agT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 190 | R190T | aGG | aCA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 190 | R190S | agG | agT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 190 | R190L | AGG | TTA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp8 | 190 | R190W | Agg | Tgg | 1 | 1 | B.1.1.208 | 0.012195 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp8 | 190 | R190del | AGG | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.1.324 | 0.052632 |
ORF1ab/nsp8 | 190 | R190del | AGG | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp8 | 190 | R190del1 | aGg | a-g | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 190 | R190L | AGG | TTA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp8 | 190 | R190M | aGg | aTg | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp8 | 190 | R190S | agG | agT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 190 | R190del | AGG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 190 | R190S | agG | agT | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp8 | 190 | R190S | agG | agT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp8 | 190 | R190R | Agg | Cgg | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp8 | 190 | R190M | aGg | aTg | 1 | 1 | B.1.479 | 0.038462 |
ORF1ab/nsp8 | 190 | R190G | Agg | Ggg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp8 | 190 | R190G | Agg | Ggg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 190 | R190del | AGG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp8 | 190 | R190K | aGg | aAg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp8 | 190 | R190R | Agg | Cgg | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp8 | 190 | R190R | agG | agA | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|