CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 188

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp8188A188AA4130AsyngcTgcC3853530.91688312653-12655
ORF1ab/nsp8188A188AA4130AsyngcTgcG385180.046753212653-12655
ORF1ab/nsp8188A188AA4130AsyngcTgcA385140.036363612653-12655
ORF1ab/nsp8188A188SA4130SnonsynGctTct64620.9687512653-12655
ORF1ab/nsp8188A188SA4130SnonsynGcTTcG6420.0312512653-12655
ORF1ab/nsp8188A188TA4130TnonsynGctAct5555112653-12655
ORF1ab/nsp8188A188VA4130VnonsyngCtgTt51470.92156912653-12655
ORF1ab/nsp8188A188VA4130VnonsyngCTgTA5140.078431412653-12655
ORF1ab/nsp8188A188EA4130EnonsyngCTgAA2525112653-12655
ORF1ab/nsp8188A188delA4130deldelGCT---1313112653-12655
ORF1ab/nsp8188A188DA4130DnonsyngCtgAt55112653-12655
ORF1ab/nsp8188A188GA4130GnonsyngCtgGt44112653-12655
ORF1ab/nsp8188A188del1A4130del1delgcTgc-44112653-12655
ORF1ab/nsp8188A188PA4130PnonsynGctCct22112653-12655
ORF1ab/nsp8188A188LA4130LnonsynGCtCTt11112653-12655

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp8188A188AgcTgcC353385All0.000068
ORF1ab/nsp8188A188AgcTgcG18385All0.000003
ORF1ab/nsp8188A188AgcTgcA14385All0.000003
ORF1ab/nsp8188A188AgcTgcC241241B.1.221.20.967871
ORF1ab/nsp8188A188SGctTct6264All0.000012
ORF1ab/nsp8188A188SGcTTcG264All0
ORF1ab/nsp8188A188TGctAct5555All0.000011
ORF1ab/nsp8188A188VgCtgTt4751All0.000009
ORF1ab/nsp8188A188VgCTgTA451All0.000001
ORF1ab/nsp8188A188EgCTgAA2525All0.000005
ORF1ab/nsp8188A188TGctAct1717C.370.001973
ORF1ab/nsp8188A188VgCtgTt1616AY.1110.00293
ORF1ab/nsp8188A188AgcTgcC816B.1.1.70.000007
ORF1ab/nsp8188A188AgcTgcA716B.1.1.70.000006
ORF1ab/nsp8188A188AgcTgcG116B.1.1.70.000001
ORF1ab/nsp8188A188SGctTct1515B.1.5990.054745
ORF1ab/nsp8188A188delGCT---1313All0.000002
ORF1ab/nsp8188A188AgcTgcC1313B.1.2210.000923
ORF1ab/nsp8188A188AgcTgcC99B.1.10.000163
ORF1ab/nsp8188A188TGctAct99B.1.5250.001018
ORF1ab/nsp8188A188TGctAct88B.1.1.70.000007
ORF1ab/nsp8188A188SGctTct88B.1.1.70.000007
ORF1ab/nsp8188A188AgcTgcC78B.1.617.20.000026
ORF1ab/nsp8188A188AgcTgcA18B.1.617.20.000004
ORF1ab/nsp8188A188AgcTgcC57AY.40.000008
ORF1ab/nsp8188A188AgcTgcG27AY.40.000003
ORF1ab/nsp8188A188EgCTgAA77AY.440.000043
ORF1ab/nsp8188A188VgCtgTt77B.1.5960.00061
ORF1ab/nsp8188A188AgcTgcC56AY.1030.000031
ORF1ab/nsp8188A188AgcTgcG16AY.1030.000006
ORF1ab/nsp8188A188TGctAct66AY.40.000009
ORF1ab/nsp8188A188AgcTgcC66B.10.000055
ORF1ab/nsp8188A188AgcTgcC56B.1.1770.000066
ORF1ab/nsp8188A188AgcTgcG16B.1.1770.000013
ORF1ab/nsp8188A188AgcTgcA46B.1.20.000035
ORF1ab/nsp8188A188AgcTgcC26B.1.20.000018
ORF1ab/nsp8188A188AgcTgcC66B.1.3750.004918
ORF1ab/nsp8188A188SGctTct66B.1.3960.004234
ORF1ab/nsp8188A188DgCtgAt55All0.000001
ORF1ab/nsp8188A188AgcTgcC35AY.1000.000138
ORF1ab/nsp8188A188AgcTgcG25AY.1000.000092
ORF1ab/nsp8188A188AgcTgcC45AY.250.000024
ORF1ab/nsp8188A188AgcTgcA15AY.250.000006
ORF1ab/nsp8188A188AgcTgcC55AY.430.000022
ORF1ab/nsp8188A188VgCtgTt45B.10.000037
ORF1ab/nsp8188A188VgCTgTA15B.10.000009
ORF1ab/nsp8188A188SGctTct55B.1.20.000044
ORF1ab/nsp8188A188del1gcTgc-44All0.000001
ORF1ab/nsp8188A188GgCtgGt44All0.000001
ORF1ab/nsp8188A188EgCTgAA44AY.1030.000025
ORF1ab/nsp8188A188SGctTct44B.10.000037
ORF1ab/nsp8188A188delGCT---44B.1.1.70.000004
ORF1ab/nsp8188A188AgcTgcC44C.360.003643
ORF1ab/nsp8188A188EgCTgAA33AY.250.000018
ORF1ab/nsp8188A188AgcTgcC33AY.850.001282
ORF1ab/nsp8188A188VgCtgTt33AY.98.10.000145
ORF1ab/nsp8188A188SGctTct33B.1.10.000054
ORF1ab/nsp8188A188VgCtgTt33B.1.1.70.000003
ORF1ab/nsp8188A188VgCtgTt33B.1.5260.000071
ORF1ab/nsp8188A188EgCTgAA33B.1.617.20.000011
ORF1ab/nsp8188A188SGcTTcG220.111111
ORF1ab/nsp8188A188VgCtgTt220.111111
ORF1ab/nsp8188A188GgCtgGt220.111111
ORF1ab/nsp8188A188TGctAct220.111111
ORF1ab/nsp8188A188PGctCct22All0
ORF1ab/nsp8188A188TGctAct22AY.30.00002
ORF1ab/nsp8188A188AgcTgcG22AY.330.000134
ORF1ab/nsp8188A188SGctTct22AY.470.000062
ORF1ab/nsp8188A188EgCTgAA22B0.000256
ORF1ab/nsp8188A188del1gcTgc-22B.10.000018
ORF1ab/nsp8188A188DgCtgAt22B.10.000018
ORF1ab/nsp8188A188VgCtgTt22B.1.10.000036
ORF1ab/nsp8188A188AgcTgcC22B.1.1.5190.000079
ORF1ab/nsp8188A188AgcTgcC22B.1.177.440.001038
ORF1ab/nsp8188A188AgcTgcG22B.1.177.70.00033
ORF1ab/nsp8188A188AgcTgcC22B.1.1980.142857
ORF1ab/nsp8188A188VgCtgTt22B.1.20.000018
ORF1ab/nsp8188A188SGctTct22B.1.360.000292
ORF1ab/nsp8188A188AgcTgcC22P.10.000032
ORF1ab/nsp8188A188TGctAct22P.10.000032
ORF1ab/nsp8188A188SGctTct22P.10.000032
ORF1ab/nsp8188A188LGCtCTt11All0
ORF1ab/nsp8188A188DgCtgAt11AU.20.002421
ORF1ab/nsp8188A188delGCT---11AY.1110.000183
ORF1ab/nsp8188A188EgCTgAA11AY.1170.000085
ORF1ab/nsp8188A188EgCTgAA11AY.130.000161
ORF1ab/nsp8188A188AgcTgcC11AY.160.00038
ORF1ab/nsp8188A188EgCTgAA11AY.230.00007
ORF1ab/nsp8188A188TGctAct11AY.250.000006
ORF1ab/nsp8188A188delGCT---11AY.250.000006
ORF1ab/nsp8188A188AgcTgcC11AY.290.000016
ORF1ab/nsp8188A188EgCTgAA11AY.30.00001
ORF1ab/nsp8188A188SGctTct11AY.30.00001
ORF1ab/nsp8188A188AgcTgcC11AY.300.000396
ORF1ab/nsp8188A188AgcTgcC11AY.340.000097
ORF1ab/nsp8188A188SGctTct11AY.40.000002
ORF1ab/nsp8188A188GgCtgGt11AY.40.000002
ORF1ab/nsp8188A188VgCtgTt11AY.4.50.000107
ORF1ab/nsp8188A188SGctTct11AY.46.60.000072
ORF1ab/nsp8188A188SGctTct11AY.50.000021
ORF1ab/nsp8188A188AgcTgcC11AY.540.000095
ORF1ab/nsp8188A188SGctTct11AY.60.000041
ORF1ab/nsp8188A188PGctCct11AY.620.000436
ORF1ab/nsp8188A188AgcTgcG11AY.690.000187
ORF1ab/nsp8188A188delGCT---11AY.750.000056
ORF1ab/nsp8188A188AgcTgcC11AY.750.000056
ORF1ab/nsp8188A188EgCTgAA11AY.840.000437
ORF1ab/nsp8188A188delGCT---11AY.9.20.000037
ORF1ab/nsp8188A188EgCTgAA11AY.98.10.000048
ORF1ab/nsp8188A188delGCT---11AY.990.001049
ORF1ab/nsp8188A188AgcTgcG11B.1.1.2140.000055
ORF1ab/nsp8188A188delGCT---11B.1.1.280.000311
ORF1ab/nsp8188A188AgcTgcG11B.1.1.3060.000438
ORF1ab/nsp8188A188SGctTct11B.1.1.3180.000302
ORF1ab/nsp8188A188PGctCct11B.1.1.3350.012987
ORF1ab/nsp8188A188delGCT---11B.1.1.3480.000796
ORF1ab/nsp8188A188AgcTgcC11B.1.1.3510.002793
ORF1ab/nsp8188A188AgcTgcC11B.1.1.4090.002833
ORF1ab/nsp8188A188VgCTgTA11B.1.1.4190.007407
ORF1ab/nsp8188A188AgcTgcC11B.1.1.4620.008621
ORF1ab/nsp8188A188AgcTgcC11B.1.1.5230.001563
ORF1ab/nsp8188A188DgCtgAt11B.1.1.70.000001
ORF1ab/nsp8188A188del1gcTgc-11B.1.1.70.000001
ORF1ab/nsp8188A188LGCtCTt11B.1.1.70.000001
ORF1ab/nsp8188A188AgcTgcG11B.1.1470.000756
ORF1ab/nsp8188A188AgcTgcC11B.1.1600.000031
ORF1ab/nsp8188A188SGctTct11B.1.1770.000013
ORF1ab/nsp8188A188delGCT---11B.1.1770.000013
ORF1ab/nsp8188A188TGctAct11B.1.1770.000013
ORF1ab/nsp8188A188SGctTct11B.1.177.230.003236
ORF1ab/nsp8188A188SGctTct11B.1.177.570.000281
ORF1ab/nsp8188A188AgcTgcC11B.1.177.730.000566
ORF1ab/nsp8188A188DgCtgAt11B.1.177.860.000183
ORF1ab/nsp8188A188del1gcTgc-11B.1.20.000009
ORF1ab/nsp8188A188TGctAct11B.1.2210.000071
ORF1ab/nsp8188A188TGctAct11B.1.2360.002053
ORF1ab/nsp8188A188TGctAct11B.1.258.170.000104
ORF1ab/nsp8188A188AgcTgcC11B.1.258.200.015873
ORF1ab/nsp8188A188SGctTct11B.1.3380.008621
ORF1ab/nsp8188A188AgcTgcG11B.1.3490.000715
ORF1ab/nsp8188A188VgCTgTA11B.1.360.000146
ORF1ab/nsp8188A188VgCTgTA11B.1.36.180.00042
ORF1ab/nsp8188A188AgcTgcA11B.1.36.290.000517
ORF1ab/nsp8188A188SGctTct11B.1.4290.000024
ORF1ab/nsp8188A188SGctTct11B.1.5230.002451
ORF1ab/nsp8188A188TGctAct11B.1.5260.000024
ORF1ab/nsp8188A188GgCtgGt11B.1.5440.006024
ORF1ab/nsp8188A188VgCtgTt11B.1.5750.000303
ORF1ab/nsp8188A188AgcTgcC11B.1.5950.000261
ORF1ab/nsp8188A188AgcTgcC11B.1.595.40.007299
ORF1ab/nsp8188A188SGctTct11B.1.617.20.000004
ORF1ab/nsp8188A188VgCtgTt11B.1.617.20.000004
ORF1ab/nsp8188A188TGctAct11B.1.617.20.000004
ORF1ab/nsp8188A188TGctAct11B.1.6360.006711
ORF1ab/nsp8188A188AgcTgcC11B.290.003509
ORF1ab/nsp8188A188AgcTgcC11B.6.40.045455
ORF1ab/nsp8188A188SGctTct11B.6.60.000889
ORF1ab/nsp8188A188SGctTct11B.600.015873
ORF1ab/nsp8188A188AgcTgcG11C.160.00106
ORF1ab/nsp8188A188VgCtgTt11D.20.000075
ORF1ab/nsp8188A188delGCT---11N.40.004255
ORF1ab/nsp8188A188AgcTgcC11P.1.10.000318
ORF1ab/nsp8188A188AgcTgcG11P.20.000187
ORF1ab/nsp8188A188VgCtgTt11Q.30.000145
ORF1ab/nsp8188A188AgcTgcC11Q.80.000165
ORF1ab/nsp8188A188TGctAct11R.10.00009