CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 175 | D175D | D4117D | syn | gaC | gaT | 1464 | 1464 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175N | D4117N | nonsyn | Gac | Aac | 224 | 224 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175G | D4117G | nonsyn | gAc | gGc | 110 | 110 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175Y | D4117Y | nonsyn | Gac | Tac | 82 | 82 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175E | D4117E | nonsyn | gaC | gaA | 27 | 27 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175A | D4117A | nonsyn | gAc | gCc | 16 | 16 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175del | D4117del | del | GAC | --- | 15 | 15 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175V | D4117V | nonsyn | gAC | gTT | 8 | 5 | 0.625 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175V | D4117V | nonsyn | gAc | gTc | 8 | 3 | 0.375 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175H | D4117H | nonsyn | Gac | Cac | 3 | 3 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175F | D4117F | nonsyn | GAC | TTT | 3 | 3 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175C | D4117C | nonsyn | GAC | TGT | 2 | 2 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175del1 | D4117del1 | del | gaC | ga- | 1 | 1 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175del2 | D4117del2 | del | GAC | A-- | 1 | 1 | 1 | 12614-12616 |
ORF1ab/nsp8 | 175 | D175I | D4117I | nonsyn | GAC | ATA | 1 | 1 | 1 | 12614-12616 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1464 | 1464 | All | 0.00028 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 560 | 560 | B.1.36.31 | 0.980736 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 264 | 264 | B.1.599 | 0.963504 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 224 | 224 | All | 0.000043 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 114 | 114 | B.1.1.7 | 0.000102 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 110 | 110 | All | 0.000021 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 82 | 82 | All | 0.000016 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 72 | 72 | AY.26 | 0.002038 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 63 | 63 | B.1.605 | 0.375 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 47 | 47 | B.1.1.7 | 0.000042 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 38 | 38 | B.1 | 0.000348 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 37 | 37 | AY.4 | 0.000058 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 36 | 36 | B.1.232 | 0.019344 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 33 | 33 | B.1.617.2 | 0.000124 |
ORF1ab/nsp8 | 175 | D175E | gaC | gaA | 27 | 27 | All | 0.000005 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 25 | 25 | P.1.17 | 0.004044 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 23 | 23 | AY.47 | 0.000715 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 22 | 22 | AY.25 | 0.000132 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 20 | 20 | B.1.247 | 0.298507 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 19 | 19 | AY.4.5 | 0.002042 |
ORF1ab/nsp8 | 175 | D175E | gaC | gaA | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp8 | 175 | D175A | gAc | gCc | 16 | 16 | All | 0.000003 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 15 | 15 | All | 0.000003 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 15 | 15 | D.2 | 0.001126 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 14 | 14 | B.1.36 | 0.002043 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 12 | 12 | B.1.36.8 | 0.012 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 10 | 10 | P.1.10 | 0.002695 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp8 | 175 | D175V | gAC | gTT | 5 | 8 | All | 0.000001 |
ORF1ab/nsp8 | 175 | D175V | gAc | gTc | 3 | 8 | All | 0.000001 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 7 | 7 | AY.74 | 0.00081 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 7 | 7 | B.1.36.17 | 0.003458 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 6 | 6 | AY.2 | 0.002137 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 6 | 6 | B.1.1.317 | 0.00247 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp8 | 175 | D175V | gAC | gTT | 4 | 4 | 0.222222 | |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp8 | 175 | D175F | GAC | TTT | 3 | 3 | All | 0.000001 |
ORF1ab/nsp8 | 175 | D175H | Gac | Cac | 3 | 3 | All | 0.000001 |
ORF1ab/nsp8 | 175 | D175A | gAc | gCc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 3 | 3 | B.1.1.302 | 0.006224 |
ORF1ab/nsp8 | 175 | D175A | gAc | gCc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp8 | 175 | D175A | gAc | gCc | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 3 | 3 | B.1.587 | 0.005693 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp8 | 175 | D175E | gaC | gaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 175 | D175C | GAC | TGT | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 175 | D175F | GAC | TTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 175 | D175C | GAC | TGT | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp8 | 175 | D175E | gaC | gaA | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 2 | 2 | B.1.149 | 0.006849 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp8 | 175 | D175I | GAC | ATA | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 175 | D175del1 | gaC | ga- | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 175 | D175del2 | GAC | A-- | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp8 | 175 | D175V | gAc | gTc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp8 | 175 | D175A | gAc | gCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp8 | 175 | D175E | gaC | gaA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp8 | 175 | D175E | gaC | gaA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp8 | 175 | D175del1 | gaC | ga- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp8 | 175 | D175E | gaC | gaA | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 175 | D175V | gAc | gTc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp8 | 175 | D175A | gAc | gCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 175 | D175I | GAC | ATA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp8 | 175 | D175A | gAc | gCc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp8 | 175 | D175V | gAC | gTT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp8 | 175 | D175A | gAc | gCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 175 | D175E | gaC | gaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 175 | D175F | GAC | TTT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp8 | 175 | D175H | Gac | Cac | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp8 | 175 | D175E | gaC | gaA | 1 | 1 | B.1.1.310 | 0.015152 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp8 | 175 | D175E | gaC | gaA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp8 | 175 | D175H | Gac | Cac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp8 | 175 | D175A | gAc | gCc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp8 | 175 | D175H | Gac | Cac | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp8 | 175 | D175A | gAc | gCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.478 | 0.011765 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp8 | 175 | D175A | gAc | gCc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp8 | 175 | D175V | gAc | gTc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 175 | D175del2 | GAC | A-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp8 | 175 | D175G | gAc | gGc | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp8 | 175 | D175Y | Gac | Tac | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp8 | 175 | D175del | GAC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp8 | 175 | D175N | Gac | Aac | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp8 | 175 | D175D | gaC | gaT | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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