CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 17

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp817T17IT3959InonsynaCtaTt37053705112140-12142
ORF1ab/nsp817T17NT3959NnonsynaCtaAt902902112140-12142
ORF1ab/nsp817T17TT3959TsynacTacC150910.60666712140-12142
ORF1ab/nsp817T17TT3959TsynacTacA150530.35333312140-12142
ORF1ab/nsp817T17TT3959TsynacTacG15060.0412140-12142
ORF1ab/nsp817T17AT3959AnonsynActGct5050112140-12142
ORF1ab/nsp817T17delT3959deldelACT---88112140-12142
ORF1ab/nsp817T17del1T3959del1delAct-ct840.512140-12142
ORF1ab/nsp817T17del1T3959del1delaCta-t820.2512140-12142
ORF1ab/nsp817T17del1T3959del1delACt-Tt810.12512140-12142
ORF1ab/nsp817T17del1T3959del1delacTac-810.12512140-12142
ORF1ab/nsp817T17del2T3959del2delACt--t44112140-12142
ORF1ab/nsp817T17ST3959SnonsynaCtaGt320.66666712140-12142
ORF1ab/nsp817T17ST3959SnonsynActTct310.33333312140-12142
ORF1ab/nsp817T17PT3959PnonsynActCct22112140-12142
ORF1ab/nsp817T17VT3959VnonsynACtGTt11112140-12142

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp817T17IaCtaTt37053705All0.000709
ORF1ab/nsp817T17IaCtaTt16541654B.1.36.360.995786
ORF1ab/nsp817T17IaCtaTt12141214AY.430.005379
ORF1ab/nsp817T17NaCtaAt902902All0.000173
ORF1ab/nsp817T17NaCtaAt775775B.1.1.70.000694
ORF1ab/nsp817T17IaCtaTt192192AY.440.001169
ORF1ab/nsp817T17IaCtaTt165165B.1.1770.002173
ORF1ab/nsp817T17TacTacC91150All0.000017
ORF1ab/nsp817T17TacTacA53150All0.00001
ORF1ab/nsp817T17TacTacG6150All0.000001
ORF1ab/nsp817T17IaCtaTt147147B.1.617.20.000554
ORF1ab/nsp817T17IaCtaTt5151AY.30.000507
ORF1ab/nsp817T17AActGct5050All0.00001
ORF1ab/nsp817T17NaCtaAt4444AY.30.000438
ORF1ab/nsp817T17IaCtaTt4444AY.40.000068
ORF1ab/nsp817T17TacTacA2428B.1.1.70.000021
ORF1ab/nsp817T17TacTacC328B.1.1.70.000003
ORF1ab/nsp817T17TacTacG128B.1.1.70.000001
ORF1ab/nsp817T17TacTacC2727AY.420.001086
ORF1ab/nsp817T17IaCtaTt2525AY.1030.000155
ORF1ab/nsp817T17IaCtaTt2121B.1.5750.006371
ORF1ab/nsp817T17IaCtaTt1919B.1.1.70.000017
ORF1ab/nsp817T17TacTacC1518B.1.617.20.000056
ORF1ab/nsp817T17TacTacA218B.1.617.20.000008
ORF1ab/nsp817T17TacTacG118B.1.617.20.000004
ORF1ab/nsp817T17IaCtaTt1616B.10.000147
ORF1ab/nsp817T17IaCtaTt1515AY.250.00009
ORF1ab/nsp817T17NaCtaAt1414AY.40.000022
ORF1ab/nsp817T17IaCtaTt1111AY.260.000311
ORF1ab/nsp817T17NaCtaAt1111B.1.3510.000327
ORF1ab/nsp817T17AActGct1010AY.380.004993
ORF1ab/nsp817T17IaCtaTt99B.1.5950.002349
ORF1ab/nsp817T17NaCtaAt99B.1.617.20.000034
ORF1ab/nsp817T17IaCtaTt99P.10.000142
ORF1ab/nsp817T17delACT---88All0.000002
ORF1ab/nsp817T17del1Act-ct48All0.000001
ORF1ab/nsp817T17del1aCta-t28All0
ORF1ab/nsp817T17del1ACt-Tt18All0
ORF1ab/nsp817T17del1acTac-18All0
ORF1ab/nsp817T17TacTacC88AY.1030.00005
ORF1ab/nsp817T17TacTacC57AY.40.000008
ORF1ab/nsp817T17TacTacA27AY.40.000003
ORF1ab/nsp817T17IaCtaTt66AY.390.000148
ORF1ab/nsp817T17TacTacC66B.1.1.911
ORF1ab/nsp817T17TacTacA66P.10.000095
ORF1ab/nsp817T17IaCtaTt55AY.1190.000177
ORF1ab/nsp817T17IaCtaTt55AY.340.000485
ORF1ab/nsp817T17NaCtaAt55AY.440.00003
ORF1ab/nsp817T17AActGct55AY.60.000206
ORF1ab/nsp817T17NaCtaAt55B.10.000046
ORF1ab/nsp817T17NaCtaAt55B.1.10.000091
ORF1ab/nsp817T17AActGct55B.1.1.70.000004
ORF1ab/nsp817T17IaCtaTt55B.1.20.000044
ORF1ab/nsp817T17TacTacC45B.1.20.000035
ORF1ab/nsp817T17TacTacG15B.1.20.000009
ORF1ab/nsp817T17IaCtaTt55B.1.360.00073
ORF1ab/nsp817T17NaCtaAt55P.10.000079
ORF1ab/nsp817T17del2ACt--t44All0.000001
ORF1ab/nsp817T17IaCtaTt44AY.1020.000106
ORF1ab/nsp817T17NaCtaAt44AY.290.000063
ORF1ab/nsp817T17IaCtaTt44AY.300.001583
ORF1ab/nsp817T17TacTacC44AY.440.000024
ORF1ab/nsp817T17TacTacC44B.10.000037
ORF1ab/nsp817T17AActGct44B.1.10.000073
ORF1ab/nsp817T17AActGct44B.1.1.270.022599
ORF1ab/nsp817T17IaCtaTt44B.1.1.5190.000159
ORF1ab/nsp817T17IaCtaTt44B.1.2580.000266
ORF1ab/nsp817T17TacTacA44B.1.6210.000354
ORF1ab/nsp817T17SaCtaGt23All0
ORF1ab/nsp817T17SActTct13All0
ORF1ab/nsp817T17TacTacC33AY.390.000074
ORF1ab/nsp817T17AActGct33AY.40.000005
ORF1ab/nsp817T17IaCtaTt33AY.46.40.000494
ORF1ab/nsp817T17IaCtaTt33AY.610.000314
ORF1ab/nsp817T17del1ACt-Tt13B.1.1.70.000001
ORF1ab/nsp817T17del1aCta-t13B.1.1.70.000001
ORF1ab/nsp817T17del1Act-ct13B.1.1.70.000001
ORF1ab/nsp817T17TacTacA33B.1.2210.000213
ORF1ab/nsp817T17IaCtaTt33P.20.00056
ORF1ab/nsp817T17PActCct22All0
ORF1ab/nsp817T17IaCtaTt22AY.1130.000285
ORF1ab/nsp817T17IaCtaTt22AY.1160.000574
ORF1ab/nsp817T17IaCtaTt22AY.1170.000169
ORF1ab/nsp817T17IaCtaTt22AY.290.000032
ORF1ab/nsp817T17IaCtaTt22AY.360.000296
ORF1ab/nsp817T17IaCtaTt22AY.39.10.000079
ORF1ab/nsp817T17NaCtaAt22AY.4.20.000043
ORF1ab/nsp817T17IaCtaTt22AY.420.00008
ORF1ab/nsp817T17TacTacG12AY.430.000004
ORF1ab/nsp817T17TacTacA12AY.430.000004
ORF1ab/nsp817T17TacTacA12AY.50.000021
ORF1ab/nsp817T17TacTacC12AY.50.000021
ORF1ab/nsp817T17IaCtaTt22AY.750.000112
ORF1ab/nsp817T17IaCtaTt22AY.840.000875
ORF1ab/nsp817T17NaCtaAt22B0.000256
ORF1ab/nsp817T17delACT---22B.10.000018
ORF1ab/nsp817T17IaCtaTt22B.1.1.1800.021505
ORF1ab/nsp817T17IaCtaTt22B.1.1.3680.006173
ORF1ab/nsp817T17TacTacA22B.1.1.5190.000079
ORF1ab/nsp817T17AActGct22B.1.1.5210.010695
ORF1ab/nsp817T17SaCtaGt22B.1.1.70.000002
ORF1ab/nsp817T17NaCtaAt22B.1.1770.000026
ORF1ab/nsp817T17AActGct22B.1.20.000018
ORF1ab/nsp817T17NaCtaAt22B.1.3980.005952
ORF1ab/nsp817T17IaCtaTt22B.1.4290.000047
ORF1ab/nsp817T17IaCtaTt22B.1.4530.006472
ORF1ab/nsp817T17IaCtaTt22B.1.5260.000047
ORF1ab/nsp817T17NaCtaAt22Q.80.00033
ORF1ab/nsp817T17IaCtaTt11A.20.000662
ORF1ab/nsp817T17VACtGTt11All0
ORF1ab/nsp817T17AActGct11AY.1020.000027
ORF1ab/nsp817T17NaCtaAt11AY.1020.000027
ORF1ab/nsp817T17NaCtaAt11AY.1040.001984
ORF1ab/nsp817T17AActGct11AY.1050.000643
ORF1ab/nsp817T17AActGct11AY.1100.000113
ORF1ab/nsp817T17NaCtaAt11AY.1100.000113
ORF1ab/nsp817T17NaCtaAt11AY.1200.000037
ORF1ab/nsp817T17IaCtaTt11AY.200.000039
ORF1ab/nsp817T17AActGct11AY.200.000039
ORF1ab/nsp817T17IaCtaTt11AY.230.00007
ORF1ab/nsp817T17NaCtaAt11AY.230.00007
ORF1ab/nsp817T17TacTacC11AY.250.000006
ORF1ab/nsp817T17NaCtaAt11AY.250.000006
ORF1ab/nsp817T17AActGct11AY.250.000006
ORF1ab/nsp817T17AActGct11AY.260.000028
ORF1ab/nsp817T17TacTacC11AY.30.00001
ORF1ab/nsp817T17AActGct11AY.320.000532
ORF1ab/nsp817T17IaCtaTt11AY.330.000067
ORF1ab/nsp817T17IaCtaTt11AY.34.10.00051
ORF1ab/nsp817T17AActGct11AY.34.10.00051
ORF1ab/nsp817T17NaCtaAt11AY.360.000148
ORF1ab/nsp817T17NaCtaAt11AY.390.000025
ORF1ab/nsp817T17IaCtaTt11AY.4.20.000022
ORF1ab/nsp817T17IaCtaTt11AY.4.2.10.000149
ORF1ab/nsp817T17NaCtaAt11AY.430.000004
ORF1ab/nsp817T17AActGct11AY.430.000004
ORF1ab/nsp817T17IaCtaTt11AY.450.000122
ORF1ab/nsp817T17del2ACt--t11AY.460.000104
ORF1ab/nsp817T17NaCtaAt11AY.46.20.000635
ORF1ab/nsp817T17NaCtaAt11AY.470.000031
ORF1ab/nsp817T17TacTacC11AY.470.000031
ORF1ab/nsp817T17IaCtaTt11AY.50.000021
ORF1ab/nsp817T17TacTacC11AY.5.40.000277
ORF1ab/nsp817T17NaCtaAt11AY.520.000814
ORF1ab/nsp817T17IaCtaTt11AY.60.000041
ORF1ab/nsp817T17TacTacC11AY.610.000105
ORF1ab/nsp817T17AActGct11AY.620.000436
ORF1ab/nsp817T17IaCtaTt11AY.680.000274
ORF1ab/nsp817T17TacTacC11AY.7.20.000559
ORF1ab/nsp817T17SActTct11AY.700.000209
ORF1ab/nsp817T17IaCtaTt11AY.740.000116
ORF1ab/nsp817T17TacTacC11AY.75.10.00018
ORF1ab/nsp817T17IaCtaTt11AY.800.001129
ORF1ab/nsp817T17del1Act-ct11AY.9.20.000037
ORF1ab/nsp817T17IaCtaTt11AY.9.20.000037
ORF1ab/nsp817T17IaCtaTt11AY.98.10.000048
ORF1ab/nsp817T17NaCtaAt11AY.98.10.000048
ORF1ab/nsp817T17del2ACt--t11B0.000128
ORF1ab/nsp817T17delACT---11B0.000128
ORF1ab/nsp817T17del1aCta-t11B.10.000009
ORF1ab/nsp817T17AActGct11B.10.000009
ORF1ab/nsp817T17PActCct11B.10.000009
ORF1ab/nsp817T17del2ACt--t11B.1.10.000018
ORF1ab/nsp817T17TacTacA11B.1.10.000018
ORF1ab/nsp817T17IaCtaTt11B.1.10.000018
ORF1ab/nsp817T17IaCtaTt11B.1.1.10.000327
ORF1ab/nsp817T17TacTacC11B.1.1.3180.000302
ORF1ab/nsp817T17TacTacA11B.1.1.3580.034483
ORF1ab/nsp817T17TacTacG11B.1.1.3970.002252
ORF1ab/nsp817T17delACT---11B.1.1.70.000001
ORF1ab/nsp817T17IaCtaTt11B.1.1.700.000341
ORF1ab/nsp817T17IaCtaTt11B.1.1600.000031
ORF1ab/nsp817T17del1Act-ct11B.1.1770.000013
ORF1ab/nsp817T17AActGct11B.1.1770.000013
ORF1ab/nsp817T17IaCtaTt11B.1.177.200.001517
ORF1ab/nsp817T17delACT---11B.1.177.450.000381
ORF1ab/nsp817T17IaCtaTt11B.1.177.600.000218
ORF1ab/nsp817T17delACT---11B.1.20.000009
ORF1ab/nsp817T17IaCtaTt11B.1.2140.003663
ORF1ab/nsp817T17NaCtaAt11B.1.2210.000071
ORF1ab/nsp817T17IaCtaTt11B.1.2340.000132
ORF1ab/nsp817T17TacTacA11B.1.2430.00007
ORF1ab/nsp817T17TacTacA11B.1.2580.000067
ORF1ab/nsp817T17IaCtaTt11B.1.2790.000514
ORF1ab/nsp817T17TacTacC11B.1.3510.00003
ORF1ab/nsp817T17TacTacA11B.1.360.000146
ORF1ab/nsp817T17IaCtaTt11B.1.36.10.00114
ORF1ab/nsp817T17IaCtaTt11B.1.36.220.001208
ORF1ab/nsp817T17VACtGTt11B.1.36.360.000602
ORF1ab/nsp817T17TacTacA11B.1.3690.000285
ORF1ab/nsp817T17TacTacA11B.1.3960.000706
ORF1ab/nsp817T17IaCtaTt11B.1.4040.001302
ORF1ab/nsp817T17del2ACt--t11B.1.4290.000024
ORF1ab/nsp817T17NaCtaAt11B.1.4700.001404
ORF1ab/nsp817T17IaCtaTt11B.1.4990.00105
ORF1ab/nsp817T17TacTacC11B.1.5640.000426
ORF1ab/nsp817T17TacTacC11B.1.5750.000303
ORF1ab/nsp817T17PActCct11B.1.617.20.000004
ORF1ab/nsp817T17IaCtaTt11B.1.6210.000089
ORF1ab/nsp817T17AActGct11B.550.00295
ORF1ab/nsp817T17del1Act-ct11C.170.055556
ORF1ab/nsp817T17IaCtaTt11C.350.000774
ORF1ab/nsp817T17IaCtaTt11C.370.000116
ORF1ab/nsp817T17TacTacG11C.370.000116
ORF1ab/nsp817T17IaCtaTt11D.20.000075
ORF1ab/nsp817T17del1acTac-11D.20.000075
ORF1ab/nsp817T17delACT---11N.40.004255
ORF1ab/nsp817T17AActGct11P.10.000016
ORF1ab/nsp817T17IaCtaTt11P.1.140.000048
ORF1ab/nsp817T17delACT---11P.1.140.000048
ORF1ab/nsp817T17AActGct11P.1.70.000319
ORF1ab/nsp817T17IaCtaTt11P.30.001595
ORF1ab/nsp817T17TacTacA11R.10.00009