CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 17

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp817T17IT3959InonsynaCtaTt37053705112140-12142
ORF1ab/nsp817T17NT3959NnonsynaCtaAt902902112140-12142
ORF1ab/nsp817T17TT3959TsynacTacC150910.60666712140-12142
ORF1ab/nsp817T17TT3959TsynacTacA150530.35333312140-12142
ORF1ab/nsp817T17TT3959TsynacTacG15060.0412140-12142
ORF1ab/nsp817T17AT3959AnonsynActGct5050112140-12142
ORF1ab/nsp817T17delT3959deldelACT---88112140-12142
ORF1ab/nsp817T17del1T3959del1delAct-ct840.512140-12142
ORF1ab/nsp817T17del1T3959del1delaCta-t820.2512140-12142
ORF1ab/nsp817T17del1T3959del1delACt-Tt810.12512140-12142
ORF1ab/nsp817T17del1T3959del1delacTac-810.12512140-12142
ORF1ab/nsp817T17del2T3959del2delACt--t44112140-12142
ORF1ab/nsp817T17ST3959SnonsynaCtaGt320.66666712140-12142
ORF1ab/nsp817T17ST3959SnonsynActTct310.33333312140-12142
ORF1ab/nsp817T17PT3959PnonsynActCct22112140-12142
ORF1ab/nsp817T17VT3959VnonsynACtGTt11112140-12142

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp817T17IaCtaTt37053705All0.000709
ORF1ab/nsp817T17IaCtaTt16541654B.1.36.360.995786
ORF1ab/nsp817T17IaCtaTt12141214AY.430.005379
ORF1ab/nsp817T17NaCtaAt902902All0.000173
ORF1ab/nsp817T17NaCtaAt775775B.1.1.70.000694
ORF1ab/nsp817T17IaCtaTt192192AY.440.001169
ORF1ab/nsp817T17IaCtaTt165165B.1.1770.002173
ORF1ab/nsp817T17TacTacC91150All0.000017
ORF1ab/nsp817T17TacTacA53150All0.00001
ORF1ab/nsp817T17TacTacG6150All0.000001
ORF1ab/nsp817T17IaCtaTt147147B.1.617.20.000554
ORF1ab/nsp817T17IaCtaTt5151AY.30.000507
ORF1ab/nsp817T17AActGct5050All0.00001
ORF1ab/nsp817T17NaCtaAt4444AY.30.000438
ORF1ab/nsp817T17IaCtaTt4444AY.40.000068
ORF1ab/nsp817T17TacTacA2428B.1.1.70.000021
ORF1ab/nsp817T17TacTacC328B.1.1.70.000003
ORF1ab/nsp817T17TacTacG128B.1.1.70.000001
ORF1ab/nsp817T17TacTacC2727AY.420.001086
ORF1ab/nsp817T17IaCtaTt2525AY.1030.000155
ORF1ab/nsp817T17IaCtaTt2121B.1.5750.006371
ORF1ab/nsp817T17IaCtaTt1919B.1.1.70.000017
ORF1ab/nsp817T17TacTacC1518B.1.617.20.000056
ORF1ab/nsp817T17TacTacA218B.1.617.20.000008
ORF1ab/nsp817T17TacTacG118B.1.617.20.000004
ORF1ab/nsp817T17IaCtaTt1616B.10.000147
ORF1ab/nsp817T17IaCtaTt1515AY.250.00009
ORF1ab/nsp817T17NaCtaAt1414AY.40.000022
ORF1ab/nsp817T17IaCtaTt1111AY.260.000311
ORF1ab/nsp817T17NaCtaAt1111B.1.3510.000327
ORF1ab/nsp817T17AActGct1010AY.380.004993
ORF1ab/nsp817T17IaCtaTt99B.1.5950.002349
ORF1ab/nsp817T17NaCtaAt99B.1.617.20.000034
ORF1ab/nsp817T17IaCtaTt99P.10.000142
ORF1ab/nsp817T17delACT---88All0.000002
ORF1ab/nsp817T17del1Act-ct48All0.000001
ORF1ab/nsp817T17del1aCta-t28All0
ORF1ab/nsp817T17del1ACt-Tt18All0
ORF1ab/nsp817T17del1acTac-18All0
ORF1ab/nsp817T17TacTacC88AY.1030.00005
ORF1ab/nsp817T17TacTacC57AY.40.000008
ORF1ab/nsp817T17TacTacA27AY.40.000003
ORF1ab/nsp817T17IaCtaTt66AY.390.000148
ORF1ab/nsp817T17TacTacC66B.1.1.911
ORF1ab/nsp817T17TacTacA66P.10.000095
ORF1ab/nsp817T17IaCtaTt55AY.1190.000177
ORF1ab/nsp817T17IaCtaTt55AY.340.000485
ORF1ab/nsp817T17NaCtaAt55AY.440.00003
ORF1ab/nsp817T17AActGct55AY.60.000206
ORF1ab/nsp817T17NaCtaAt55B.10.000046
ORF1ab/nsp817T17NaCtaAt55B.1.10.000091
ORF1ab/nsp817T17AActGct55B.1.1.70.000004
ORF1ab/nsp817T17IaCtaTt55B.1.20.000044
ORF1ab/nsp817T17TacTacC45B.1.20.000035
ORF1ab/nsp817T17TacTacG15B.1.20.000009
ORF1ab/nsp817T17IaCtaTt55B.1.360.00073
ORF1ab/nsp817T17NaCtaAt55P.10.000079
ORF1ab/nsp817T17del2ACt--t44All0.000001
ORF1ab/nsp817T17IaCtaTt44AY.1020.000106
ORF1ab/nsp817T17NaCtaAt44AY.290.000063
ORF1ab/nsp817T17IaCtaTt44AY.300.001583
ORF1ab/nsp817T17TacTacC44AY.440.000024
ORF1ab/nsp817T17TacTacC44B.10.000037
ORF1ab/nsp817T17AActGct44B.1.10.000073
ORF1ab/nsp817T17AActGct44B.1.1.270.022599
ORF1ab/nsp817T17IaCtaTt44B.1.1.5190.000159
ORF1ab/nsp817T17IaCtaTt44B.1.2580.000266
ORF1ab/nsp817T17TacTacA44B.1.6210.000354
ORF1ab/nsp817T17SaCtaGt23All0
ORF1ab/nsp817T17SActTct13All0
ORF1ab/nsp817T17TacTacC33AY.390.000074
ORF1ab/nsp817T17AActGct33AY.40.000005
ORF1ab/nsp817T17IaCtaTt33AY.46.40.000494
ORF1ab/nsp817T17IaCtaTt33AY.610.000314
ORF1ab/nsp817T17del1ACt-Tt13B.1.1.70.000001
ORF1ab/nsp817T17del1aCta-t13B.1.1.70.000001
ORF1ab/nsp817T17del1Act-ct13B.1.1.70.000001
ORF1ab/nsp817T17TacTacA33B.1.2210.000213
ORF1ab/nsp817T17IaCtaTt33P.20.00056
ORF1ab/nsp817T17PActCct22All0
ORF1ab/nsp817T17IaCtaTt22AY.1130.000285
ORF1ab/nsp817T17IaCtaTt22AY.1160.000574
ORF1ab/nsp817T17IaCtaTt22AY.1170.000169
ORF1ab/nsp817T17IaCtaTt22AY.290.000032
ORF1ab/nsp817T17IaCtaTt22AY.360.000296
ORF1ab/nsp817T17IaCtaTt22AY.39.10.000079
ORF1ab/nsp817T17NaCtaAt22AY.4.20.000043
ORF1ab/nsp817T17IaCtaTt22AY.420.00008
ORF1ab/nsp817T17TacTacG12AY.430.000004
ORF1ab/nsp817T17TacTacA12AY.430.000004
ORF1ab/nsp817T17TacTacA12AY.50.000021
ORF1ab/nsp817T17TacTacC12AY.50.000021
ORF1ab/nsp817T17IaCtaTt22AY.750.000112
ORF1ab/nsp817T17IaCtaTt22AY.840.000875
ORF1ab/nsp817T17NaCtaAt22B0.000256
ORF1ab/nsp817T17delACT---22B.10.000018
ORF1ab/nsp817T17IaCtaTt22B.1.1.1800.021505
ORF1ab/nsp817T17IaCtaTt22B.1.1.3680.006173
ORF1ab/nsp817T17TacTacA22B.1.1.5190.000079
ORF1ab/nsp817T17AActGct22B.1.1.5210.010695
ORF1ab/nsp817T17SaCtaGt22B.1.1.70.000002
ORF1ab/nsp817T17NaCtaAt22B.1.1770.000026
ORF1ab/nsp817T17AActGct22B.1.20.000018
ORF1ab/nsp817T17NaCtaAt22B.1.3980.005952
ORF1ab/nsp817T17IaCtaTt22B.1.4290.000047
ORF1ab/nsp817T17IaCtaTt22B.1.4530.006472
ORF1ab/nsp817T17IaCtaTt22B.1.5260.000047
ORF1ab/nsp817T17NaCtaAt22Q.80.00033
ORF1ab/nsp817T17IaCtaTt11A.20.000662
ORF1ab/nsp817T17VACtGTt11All0
ORF1ab/nsp817T17AActGct11AY.1020.000027
ORF1ab/nsp817T17NaCtaAt11AY.1020.000027
ORF1ab/nsp817T17NaCtaAt11AY.1040.001984
ORF1ab/nsp817T17AActGct11AY.1050.000643
ORF1ab/nsp817T17AActGct11AY.1100.000113
ORF1ab/nsp817T17NaCtaAt11AY.1100.000113
ORF1ab/nsp817T17NaCtaAt11AY.1200.000037
ORF1ab/nsp817T17IaCtaTt11AY.200.000039
ORF1ab/nsp817T17AActGct11AY.200.000039
ORF1ab/nsp817T17IaCtaTt11AY.230.00007
ORF1ab/nsp817T17NaCtaAt11AY.230.00007
ORF1ab/nsp817T17TacTacC11AY.250.000006
ORF1ab/nsp817T17NaCtaAt11AY.250.000006
ORF1ab/nsp817T17AActGct11AY.250.000006
ORF1ab/nsp817T17AActGct11AY.260.000028
ORF1ab/nsp817T17TacTacC11AY.30.00001
ORF1ab/nsp817T17AActGct11AY.320.000532
ORF1ab/nsp817T17IaCtaTt11AY.330.000067
ORF1ab/nsp817T17IaCtaTt11AY.34.10.00051
ORF1ab/nsp817T17AActGct11AY.34.10.00051
ORF1ab/nsp817T17NaCtaAt11AY.360.000148
ORF1ab/nsp817T17NaCtaAt11AY.390.000025
ORF1ab/nsp817T17IaCtaTt11AY.4.20.000022
ORF1ab/nsp817T17IaCtaTt11AY.4.2.10.000149
ORF1ab/nsp817T17NaCtaAt11AY.430.000004
ORF1ab/nsp817T17AActGct11AY.430.000004
ORF1ab/nsp817T17IaCtaTt11AY.450.000122
ORF1ab/nsp817T17del2ACt--t11AY.460.000104
ORF1ab/nsp817T17NaCtaAt11AY.46.20.000635
ORF1ab/nsp817T17NaCtaAt11AY.470.000031
ORF1ab/nsp817T17TacTacC11AY.470.000031
ORF1ab/nsp817T17IaCtaTt11AY.50.000021
ORF1ab/nsp817T17TacTacC11AY.5.40.000277
ORF1ab/nsp817T17NaCtaAt11AY.520.000814
ORF1ab/nsp817T17IaCtaTt11AY.60.000041
ORF1ab/nsp817T17TacTacC11AY.610.000105
ORF1ab/nsp817T17AActGct11AY.620.000436
ORF1ab/nsp817T17IaCtaTt11AY.680.000274
ORF1ab/nsp817T17TacTacC11AY.7.20.000559
ORF1ab/nsp817T17SActTct11AY.700.000209
ORF1ab/nsp817T17IaCtaTt11AY.740.000116
ORF1ab/nsp817T17TacTacC11AY.75.10.00018
ORF1ab/nsp817T17IaCtaTt11AY.800.001129
ORF1ab/nsp817T17del1Act-ct11AY.9.20.000037
ORF1ab/nsp817T17IaCtaTt11AY.9.20.000037
ORF1ab/nsp817T17IaCtaTt11AY.98.10.000048
ORF1ab/nsp817T17NaCtaAt11AY.98.10.000048
ORF1ab/nsp817T17del2ACt--t11B0.000128
ORF1ab/nsp817T17delACT---11B0.000128
ORF1ab/nsp817T17del1aCta-t11B.10.000009
ORF1ab/nsp817T17AActGct11B.10.000009
ORF1ab/nsp817T17PActCct11B.10.000009
ORF1ab/nsp817T17del2ACt--t11B.1.10.000018
ORF1ab/nsp817T17TacTacA11B.1.10.000018
ORF1ab/nsp817T17IaCtaTt11B.1.10.000018
ORF1ab/nsp817T17IaCtaTt11B.1.1.10.000327
ORF1ab/nsp817T17TacTacC11B.1.1.3180.000302
ORF1ab/nsp817T17TacTacA11B.1.1.3580.034483
ORF1ab/nsp817T17TacTacG11B.1.1.3970.002252
ORF1ab/nsp817T17delACT---11B.1.1.70.000001
ORF1ab/nsp817T17IaCtaTt11B.1.1.700.000341
ORF1ab/nsp817T17IaCtaTt11B.1.1600.000031
ORF1ab/nsp817T17del1Act-ct11B.1.1770.000013
ORF1ab/nsp817T17AActGct11B.1.1770.000013
ORF1ab/nsp817T17IaCtaTt11B.1.177.200.001517
ORF1ab/nsp817T17delACT---11B.1.177.450.000381
ORF1ab/nsp817T17IaCtaTt11B.1.177.600.000218
ORF1ab/nsp817T17delACT---11B.1.20.000009
ORF1ab/nsp817T17IaCtaTt11B.1.2140.003663
ORF1ab/nsp817T17NaCtaAt11B.1.2210.000071
ORF1ab/nsp817T17IaCtaTt11B.1.2340.000132
ORF1ab/nsp817T17TacTacA11B.1.2430.00007
ORF1ab/nsp817T17TacTacA11B.1.2580.000067
ORF1ab/nsp817T17IaCtaTt11B.1.2790.000514
ORF1ab/nsp817T17TacTacC11B.1.3510.00003
ORF1ab/nsp817T17TacTacA11B.1.360.000146
ORF1ab/nsp817T17IaCtaTt11B.1.36.10.00114
ORF1ab/nsp817T17IaCtaTt11B.1.36.220.001208
ORF1ab/nsp817T17VACtGTt11B.1.36.360.000602
ORF1ab/nsp817T17TacTacA11B.1.3690.000285
ORF1ab/nsp817T17TacTacA11B.1.3960.000706
ORF1ab/nsp817T17IaCtaTt11B.1.4040.001302
ORF1ab/nsp817T17del2ACt--t11B.1.4290.000024
ORF1ab/nsp817T17NaCtaAt11B.1.4700.001404
ORF1ab/nsp817T17IaCtaTt11B.1.4990.00105
ORF1ab/nsp817T17TacTacC11B.1.5640.000426
ORF1ab/nsp817T17TacTacC11B.1.5750.000303
ORF1ab/nsp817T17PActCct11B.1.617.20.000004
ORF1ab/nsp817T17IaCtaTt11B.1.6210.000089
ORF1ab/nsp817T17AActGct11B.550.00295
ORF1ab/nsp817T17del1Act-ct11C.170.055556
ORF1ab/nsp817T17IaCtaTt11C.350.000774
ORF1ab/nsp817T17IaCtaTt11C.370.000116
ORF1ab/nsp817T17TacTacG11C.370.000116
ORF1ab/nsp817T17IaCtaTt11D.20.000075
ORF1ab/nsp817T17del1acTac-11D.20.000075
ORF1ab/nsp817T17delACT---11N.40.004255
ORF1ab/nsp817T17AActGct11P.10.000016
ORF1ab/nsp817T17IaCtaTt11P.1.140.000048
ORF1ab/nsp817T17delACT---11P.1.140.000048
ORF1ab/nsp817T17AActGct11P.1.70.000319
ORF1ab/nsp817T17IaCtaTt11P.30.001595
ORF1ab/nsp817T17TacTacA11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.