CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 160

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp8160V160IV4102InonsynGtaAta8478450.99763912569-12571
ORF1ab/nsp8160V160IV4102InonsynGtAAtT84720.0023612812569-12571
ORF1ab/nsp8160V160VV4102VsyngtAgtG3102590.83548412569-12571
ORF1ab/nsp8160V160VV4102VsyngtAgtT310500.1612912569-12571
ORF1ab/nsp8160V160VV4102VsyngtAgtC31010.0032258112569-12571
ORF1ab/nsp8160V160LV4102LnonsynGtaTta1801760.97777812569-12571
ORF1ab/nsp8160V160LV4102LnonsynGtaCta18040.022222212569-12571
ORF1ab/nsp8160V160AV4102AnonsyngTagCa2424112569-12571
ORF1ab/nsp8160V160delV4102deldelGTA---1111112569-12571
ORF1ab/nsp8160V160del1V4102del1delgTag-a320.66666712569-12571
ORF1ab/nsp8160V160del1V4102del1delGta-ta310.33333312569-12571
ORF1ab/nsp8160V160FV4102FnonsynGtATtT22112569-12571
ORF1ab/nsp8160V160GV4102GnonsyngTagGa22112569-12571
ORF1ab/nsp8160V160CV4102CnonsynGTATGT11112569-12571
ORF1ab/nsp8160V160EV4102EnonsyngTagAa11112569-12571

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp8160V160IGtaAta845847All0.000162
ORF1ab/nsp8160V160IGtAAtT2847All0
ORF1ab/nsp8160V160VgtAgtG259310All0.00005
ORF1ab/nsp8160V160VgtAgtT50310All0.00001
ORF1ab/nsp8160V160VgtAgtC1310All0
ORF1ab/nsp8160V160LGtaTta176180All0.000034
ORF1ab/nsp8160V160LGtaCta4180All0.000001
ORF1ab/nsp8160V160IGtaAta167167B.1.617.20.000629
ORF1ab/nsp8160V160IGtaAta132132B.1.6320.885906
ORF1ab/nsp8160V160IGtaAta7474AY.1020.001962
ORF1ab/nsp8160V160IGtaAta6666AY.430.000292
ORF1ab/nsp8160V160VgtAgtG6464AY.30.000637
ORF1ab/nsp8160V160IGtaAta5151AY.1030.000317
ORF1ab/nsp8160V160IGtaAta4747AY.40.000073
ORF1ab/nsp8160V160VgtAgtT4142AY.330.002738
ORF1ab/nsp8160V160VgtAgtG142AY.330.000067
ORF1ab/nsp8160V160LGtaTta3434AY.640.020238
ORF1ab/nsp8160V160LGtaTta2828AY.1110.005128
ORF1ab/nsp8160V160VgtAgtG2627B.1.1.70.000023
ORF1ab/nsp8160V160VgtAgtT127B.1.1.70.000001
ORF1ab/nsp8160V160LGtaTta2727B.1.617.20.000102
ORF1ab/nsp8160V160IGtaAta2626AY.1180.001629
ORF1ab/nsp8160V160IGtaAta2525AY.30.000249
ORF1ab/nsp8160V160VgtAgtG2525AY.40.000039
ORF1ab/nsp8160V160AgTagCa2424All0.000005
ORF1ab/nsp8160V160VgtAgtG2424B.1.617.20.00009
ORF1ab/nsp8160V160LGtaTta2021B.1.1.70.000018
ORF1ab/nsp8160V160LGtaCta121B.1.1.70.000001
ORF1ab/nsp8160V160VgtAgtG2121B.1.20.000185
ORF1ab/nsp8160V160IGtaAta2020AY.250.00012
ORF1ab/nsp8160V160IGtaAta2020AY.440.000122
ORF1ab/nsp8160V160LGtaTta1717AY.10.006727
ORF1ab/nsp8160V160IGtaAta1616AY.390.000395
ORF1ab/nsp8160V160VgtAgtG1616AY.98.10.000775
ORF1ab/nsp8160V160IGtaAta1616B.1.1.70.000014
ORF1ab/nsp8160V160IGtaAta1515B.1.2210.001065
ORF1ab/nsp8160V160IGtaAta1212AY.260.00034
ORF1ab/nsp8160V160delGTA---1111All0.000002
ORF1ab/nsp8160V160VgtAgtG1111AY.430.000049
ORF1ab/nsp8160V160VgtAgtG1111B.1.10.0002
ORF1ab/nsp8160V160IGtaAta1010AY.330.000668
ORF1ab/nsp8160V160LGtaTta99AY.40.000014
ORF1ab/nsp8160V160AgTagCa88AY.40.000012
ORF1ab/nsp8160V160IGtaAta88B.1.20.00007
ORF1ab/nsp8160V160VgtAgtG77B.1.438.10.000751
ORF1ab/nsp8160V160IGtaAta77B.1.6190.006098
ORF1ab/nsp8160V160IGtaAta66AY.1200.000223
ORF1ab/nsp8160V160VgtAgtG66B.450.022989
ORF1ab/nsp8160V160VgtAgtG55AY.200.000194
ORF1ab/nsp8160V160IGtaAta55AY.290.000079
ORF1ab/nsp8160V160IGtaAta55AY.4.50.000537
ORF1ab/nsp8160V160AgTagCa55B.1.20.000044
ORF1ab/nsp8160V160VgtAgtT440.222222
ORF1ab/nsp8160V160LGtaTta44AY.1020.000106
ORF1ab/nsp8160V160IGtaAta44AY.200.000155
ORF1ab/nsp8160V160IGtaAta44AY.230.000279
ORF1ab/nsp8160V160LGtaTta44AY.430.000018
ORF1ab/nsp8160V160IGtaAta44AY.460.000416
ORF1ab/nsp8160V160IGtaAta44AY.50.000083
ORF1ab/nsp8160V160IGtaAta44B.1.1.500.002716
ORF1ab/nsp8160V160IGtaAta44B.1.1770.000053
ORF1ab/nsp8160V160IGtaAta44P.10.000063
ORF1ab/nsp8160V160del1gTag-a23All0
ORF1ab/nsp8160V160del1Gta-ta13All0
ORF1ab/nsp8160V160IGtaAta33AY.100.00159
ORF1ab/nsp8160V160IGtaAta33AY.1090.002219
ORF1ab/nsp8160V160IGtaAta33AY.1170.000254
ORF1ab/nsp8160V160LGtaTta33AY.250.000018
ORF1ab/nsp8160V160IGtaAta33AY.4.20.000065
ORF1ab/nsp8160V160LGtaTta33AY.450.000365
ORF1ab/nsp8160V160VgtAgtG33AY.5.30.001012
ORF1ab/nsp8160V160IGtaAta33B.10.000027
ORF1ab/nsp8160V160AgTagCa33B.10.000027
ORF1ab/nsp8160V160delGTA---33B.1.1.70.000003
ORF1ab/nsp8160V160IGtaAta33B.1.4290.000071
ORF1ab/nsp8160V160LGtaCta220.111111
ORF1ab/nsp8160V160FGtATtT220.111111
ORF1ab/nsp8160V160IGtAAtT220.111111
ORF1ab/nsp8160V160del1gTag-a220.111111
ORF1ab/nsp8160V160VgtAgtG22AA.70.018349
ORF1ab/nsp8160V160FGtATtT22All0
ORF1ab/nsp8160V160GgTagGa22All0
ORF1ab/nsp8160V160LGtaTta22AY.1030.000012
ORF1ab/nsp8160V160IGtaAta22AY.1080.002205
ORF1ab/nsp8160V160IGtaAta22AY.1140.000462
ORF1ab/nsp8160V160delGTA---22AY.250.000012
ORF1ab/nsp8160V160VgtAgtT12AY.250.000006
ORF1ab/nsp8160V160VgtAgtG12AY.250.000006
ORF1ab/nsp8160V160LGtaTta22AY.280.003781
ORF1ab/nsp8160V160IGtaAta22AY.300.000791
ORF1ab/nsp8160V160IGtaAta22AY.420.00008
ORF1ab/nsp8160V160VgtAgtG22AY.420.00008
ORF1ab/nsp8160V160IGtaAta22AY.450.000243
ORF1ab/nsp8160V160IGtaAta22AY.46.60.000144
ORF1ab/nsp8160V160IGtaAta22AY.470.000062
ORF1ab/nsp8160V160IGtaAta22AY.490.00639
ORF1ab/nsp8160V160IGtaAta22AY.550.001835
ORF1ab/nsp8160V160IGtaAta22AY.750.000112
ORF1ab/nsp8160V160IGtaAta22AY.840.000875
ORF1ab/nsp8160V160IGtaAta22AY.90.000135
ORF1ab/nsp8160V160IGtaAta22AY.950.001522
ORF1ab/nsp8160V160IGtaAta22AY.99.20.000184
ORF1ab/nsp8160V160LGtaCta12B.10.000009
ORF1ab/nsp8160V160LGtaTta12B.10.000009
ORF1ab/nsp8160V160IGtaAta22B.1.10.000036
ORF1ab/nsp8160V160LGtaTta22B.1.1.280.000622
ORF1ab/nsp8160V160AgTagCa22B.1.1.70.000002
ORF1ab/nsp8160V160IGtaAta22B.1.2340.000264
ORF1ab/nsp8160V160IGtaAta22B.1.2810.043478
ORF1ab/nsp8160V160VgtAgtG22B.1.4290.000047
ORF1ab/nsp8160V160IGtaAta22B.1.4990.002101
ORF1ab/nsp8160V160VgtAgtG22B.1.5990.007299
ORF1ab/nsp8160V160IGtaAta22B.1.6230.001073
ORF1ab/nsp8160V160VgtAgtG22P.20.000373
ORF1ab/nsp8160V160CGTATGT11All0
ORF1ab/nsp8160V160EgTagAa11All0
ORF1ab/nsp8160V160EgTagAa11AU.20.002421
ORF1ab/nsp8160V160IGtaAta11AY.1000.000046
ORF1ab/nsp8160V160AgTagCa11AY.1030.000006
ORF1ab/nsp8160V160VgtAgtT11AY.1060.000335
ORF1ab/nsp8160V160IGtaAta11AY.1110.000183
ORF1ab/nsp8160V160LGtaTta11AY.1160.000287
ORF1ab/nsp8160V160VgtAgtG11AY.120.000316
ORF1ab/nsp8160V160LGtaTta11AY.120.000316
ORF1ab/nsp8160V160IGtaAta11AY.240.000431
ORF1ab/nsp8160V160VgtAgtG11AY.260.000028
ORF1ab/nsp8160V160VgtAgtG11AY.320.000532
ORF1ab/nsp8160V160IGtaAta11AY.34.10.00051
ORF1ab/nsp8160V160VgtAgtG11AY.360.000148
ORF1ab/nsp8160V160LGtaTta11AY.390.000025
ORF1ab/nsp8160V160VgtAgtT11AY.390.000025
ORF1ab/nsp8160V160VgtAgtG11AY.4.20.000022
ORF1ab/nsp8160V160AgTagCa11AY.440.000006
ORF1ab/nsp8160V160VgtAgtG11AY.440.000006
ORF1ab/nsp8160V160VgtAgtG11AY.450.000122
ORF1ab/nsp8160V160LGtaTta11AY.460.000104
ORF1ab/nsp8160V160IGtaAta11AY.46.20.000635
ORF1ab/nsp8160V160delGTA---11AY.46.20.000635
ORF1ab/nsp8160V160IGtaAta11AY.5.40.000277
ORF1ab/nsp8160V160VgtAgtG11AY.530.000288
ORF1ab/nsp8160V160VgtAgtG11AY.560.001605
ORF1ab/nsp8160V160LGtaTta11AY.590.00053
ORF1ab/nsp8160V160VgtAgtG11AY.600.000938
ORF1ab/nsp8160V160IGtaAta11AY.610.000105
ORF1ab/nsp8160V160LGtaTta11AY.670.000464
ORF1ab/nsp8160V160IGtaAta11AY.680.000274
ORF1ab/nsp8160V160LGtaTta11AY.700.000209
ORF1ab/nsp8160V160IGtaAta11AY.700.000209
ORF1ab/nsp8160V160delGTA---11AY.750.000056
ORF1ab/nsp8160V160VgtAgtG11AY.75.10.00018
ORF1ab/nsp8160V160VgtAgtG11AY.80.000606
ORF1ab/nsp8160V160VgtAgtG11AY.870.000833
ORF1ab/nsp8160V160VgtAgtG11AY.90.000068
ORF1ab/nsp8160V160LGtaTta11AY.9.10.000084
ORF1ab/nsp8160V160IGtaAta11AY.900.000684
ORF1ab/nsp8160V160IGtaAta11AY.98.10.000048
ORF1ab/nsp8160V160IGtaAta11B0.000128
ORF1ab/nsp8160V160GgTagGa11B0.000128
ORF1ab/nsp8160V160VgtAgtG11B.10.000009
ORF1ab/nsp8160V160delGTA---11B.10.000009
ORF1ab/nsp8160V160LGtaTta11B.1.10.000018
ORF1ab/nsp8160V160IGtaAta11B.1.1.2160.00089
ORF1ab/nsp8160V160delGTA---11B.1.1.280.000311
ORF1ab/nsp8160V160IGtaAta11B.1.1.3180.000302
ORF1ab/nsp8160V160IGtaAta11B.1.1.370.000193
ORF1ab/nsp8160V160IGtaAta11B.1.1.4200.001006
ORF1ab/nsp8160V160AgTagCa11B.1.1.4330.001425
ORF1ab/nsp8160V160VgtAgtG11B.1.1.4860.001577
ORF1ab/nsp8160V160IGtaAta11B.1.1.5190.00004
ORF1ab/nsp8160V160AgTagCa11B.1.1.5190.00004
ORF1ab/nsp8160V160GgTagGa11B.1.1.70.000001
ORF1ab/nsp8160V160CGTATGT11B.1.1.70.000001
ORF1ab/nsp8160V160AgTagCa11B.1.1600.000031
ORF1ab/nsp8160V160AgTagCa11B.1.1770.000013
ORF1ab/nsp8160V160IGtaAta11B.1.177.770.000726
ORF1ab/nsp8160V160LGtaTta11B.1.20.000009
ORF1ab/nsp8160V160IGtaAta11B.1.2230.002778
ORF1ab/nsp8160V160LGtaTta11B.1.2390.001221
ORF1ab/nsp8160V160VgtAgtG11B.1.2400.000216
ORF1ab/nsp8160V160VgtAgtG11B.1.2430.00007
ORF1ab/nsp8160V160IGtaAta11B.1.2580.000067
ORF1ab/nsp8160V160LGtaTta11B.1.2600.003344
ORF1ab/nsp8160V160VgtAgtG11B.1.3110.000275
ORF1ab/nsp8160V160IGtaAta11B.1.3440.008197
ORF1ab/nsp8160V160IGtaAta11B.1.3510.00003
ORF1ab/nsp8160V160VgtAgtG11B.1.360.000146
ORF1ab/nsp8160V160VgtAgtG11B.1.36.170.000494
ORF1ab/nsp8160V160VgtAgtG11B.1.36.180.00042
ORF1ab/nsp8160V160IGtaAta11B.1.3750.00082
ORF1ab/nsp8160V160del1Gta-ta11B.1.4090.000781
ORF1ab/nsp8160V160IGtaAta11B.1.4270.00005
ORF1ab/nsp8160V160LGtaTta11B.1.466.20.000391
ORF1ab/nsp8160V160LGtaTta11B.1.5090.000866
ORF1ab/nsp8160V160IGtaAta11B.1.5230.002451
ORF1ab/nsp8160V160VgtAgtG11B.1.5260.000024
ORF1ab/nsp8160V160IGtaAta11B.1.5500.013699
ORF1ab/nsp8160V160VgtAgtG11B.1.5650.00081
ORF1ab/nsp8160V160IGtaAta11B.1.5820.000491
ORF1ab/nsp8160V160LGtaTta11B.1.5950.000261
ORF1ab/nsp8160V160LGtaTta11B.1.595.10.005848
ORF1ab/nsp8160V160IGtaAta11B.1.5960.000087
ORF1ab/nsp8160V160IGtaAta11B.1.617.10.000129
ORF1ab/nsp8160V160VgtAgtG11B.1.617.10.000129
ORF1ab/nsp8160V160LGtaTta11B.1.6210.000089
ORF1ab/nsp8160V160VgtAgtG11B.1.621.10.000506
ORF1ab/nsp8160V160IGtaAta11B.1.6250.002353
ORF1ab/nsp8160V160VgtAgtG11B.1.6280.000352
ORF1ab/nsp8160V160IGtaAta11B.1.6280.000352
ORF1ab/nsp8160V160LGtaTta11B.1.6370.000073
ORF1ab/nsp8160V160IGtaAta11B.30.000831
ORF1ab/nsp8160V160delGTA---11B.340.013699
ORF1ab/nsp8160V160IGtaAta11C.360.000911
ORF1ab/nsp8160V160LGtaTta11C.370.000116
ORF1ab/nsp8160V160VgtAgtT11D.20.000075
ORF1ab/nsp8160V160delGTA---11N.40.004255
ORF1ab/nsp8160V160VgtAgtG11P.10.000016
ORF1ab/nsp8160V160LGtaTta11P.10.000016
ORF1ab/nsp8160V160VgtAgtC11P.1.20.001156

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.