CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 156 & Codon = Gtc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp8156I156VI4098VnonsynAtcGtc844844112557-12559

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp8156I156VAtcGtc844844All0.000161
ORF1ab/nsp8156I156VAtcGtc325325B.1.1.70.000291
ORF1ab/nsp8156I156VAtcGtc154154AY.99.20.014192
ORF1ab/nsp8156I156VAtcGtc5858A.190.54717
ORF1ab/nsp8156I156VAtcGtc4848B.461
ORF1ab/nsp8156I156VAtcGtc3838B.1.5960.003311
ORF1ab/nsp8156I156VAtcGtc2424AY.40.000037
ORF1ab/nsp8156I156VAtcGtc2222AY.250.000132
ORF1ab/nsp8156I156VAtcGtc1515B.1.20.000132
ORF1ab/nsp8156I156VAtcGtc1414AY.10.00554
ORF1ab/nsp8156I156VAtcGtc1313B.1.617.20.000049
ORF1ab/nsp8156I156VAtcGtc1111AY.1200.000409
ORF1ab/nsp8156I156VAtcGtc99B.1.1770.000119
ORF1ab/nsp8156I156VAtcGtc66AY.950.004566
ORF1ab/nsp8156I156VAtcGtc66B.10.000055
ORF1ab/nsp8156I156VAtcGtc44B.1.2580.000266
ORF1ab/nsp8156I156VAtcGtc44B.1.4040.005208
ORF1ab/nsp8156I156VAtcGtc44C.370.000464
ORF1ab/nsp8156I156VAtcGtc44P.1.150.000929
ORF1ab/nsp8156I156VAtcGtc33A0.001161
ORF1ab/nsp8156I156VAtcGtc33AY.200.000117
ORF1ab/nsp8156I156VAtcGtc33AY.30.00003
ORF1ab/nsp8156I156VAtcGtc33AY.390.000074
ORF1ab/nsp8156I156VAtcGtc33AY.39.10.000119
ORF1ab/nsp8156I156VAtcGtc33AY.440.000018
ORF1ab/nsp8156I156VAtcGtc33B.1.10.000054
ORF1ab/nsp8156I156VAtcGtc33B.1.1600.000094
ORF1ab/nsp8156I156VAtcGtc33B.1.2430.000209
ORF1ab/nsp8156I156VAtcGtc22AY.1030.000012
ORF1ab/nsp8156I156VAtcGtc22AY.1130.000285
ORF1ab/nsp8156I156VAtcGtc22AY.4.20.000043
ORF1ab/nsp8156I156VAtcGtc22AY.430.000009
ORF1ab/nsp8156I156VAtcGtc22AY.790.002421
ORF1ab/nsp8156I156VAtcGtc22B0.000256
ORF1ab/nsp8156I156VAtcGtc22B.1.4270.000101
ORF1ab/nsp8156I156VAtcGtc11A.20.000662
ORF1ab/nsp8156I156VAtcGtc11AY.1180.000063
ORF1ab/nsp8156I156VAtcGtc11AY.1190.000035
ORF1ab/nsp8156I156VAtcGtc11AY.1210.000135
ORF1ab/nsp8156I156VAtcGtc11AY.260.000028
ORF1ab/nsp8156I156VAtcGtc11AY.290.000016
ORF1ab/nsp8156I156VAtcGtc11AY.300.000396
ORF1ab/nsp8156I156VAtcGtc11AY.330.000067
ORF1ab/nsp8156I156VAtcGtc11AY.420.00004
ORF1ab/nsp8156I156VAtcGtc11AY.50.000021
ORF1ab/nsp8156I156VAtcGtc11AY.5.30.000337
ORF1ab/nsp8156I156VAtcGtc11AY.610.000105
ORF1ab/nsp8156I156VAtcGtc11AY.850.000427
ORF1ab/nsp8156I156VAtcGtc11AY.910.00073
ORF1ab/nsp8156I156VAtcGtc11AY.98.10.000048
ORF1ab/nsp8156I156VAtcGtc11B.1.1.2070.001182
ORF1ab/nsp8156I156VAtcGtc11B.1.1.2140.000055
ORF1ab/nsp8156I156VAtcGtc11B.1.1.2630.001558
ORF1ab/nsp8156I156VAtcGtc11B.1.1.3160.000925
ORF1ab/nsp8156I156VAtcGtc11B.1.1.370.000193
ORF1ab/nsp8156I156VAtcGtc11B.1.1.390.00051
ORF1ab/nsp8156I156VAtcGtc11B.1.160.70.002079
ORF1ab/nsp8156I156VAtcGtc11B.1.177.350.000691
ORF1ab/nsp8156I156VAtcGtc11B.1.177.440.000519
ORF1ab/nsp8156I156VAtcGtc11B.1.177.650.000665
ORF1ab/nsp8156I156VAtcGtc11B.1.177.730.000566
ORF1ab/nsp8156I156VAtcGtc11B.1.177.770.000726
ORF1ab/nsp8156I156VAtcGtc11B.1.2360.002053
ORF1ab/nsp8156I156VAtcGtc11B.1.258.240.010753
ORF1ab/nsp8156I156VAtcGtc11B.1.3080.034483
ORF1ab/nsp8156I156VAtcGtc11B.1.3410.022727
ORF1ab/nsp8156I156VAtcGtc11B.1.3510.00003
ORF1ab/nsp8156I156VAtcGtc11B.1.36.160.001425
ORF1ab/nsp8156I156VAtcGtc11B.1.3910.001127
ORF1ab/nsp8156I156VAtcGtc11B.1.4290.000024
ORF1ab/nsp8156I156VAtcGtc11B.1.5260.000024
ORF1ab/nsp8156I156VAtcGtc11B.1.5650.00081
ORF1ab/nsp8156I156VAtcGtc11B.1.5880.00091
ORF1ab/nsp8156I156VAtcGtc11B.1.6210.000089
ORF1ab/nsp8156I156VAtcGtc11B.550.00295
ORF1ab/nsp8156I156VAtcGtc11B.60.00091
ORF1ab/nsp8156I156VAtcGtc11P.10.000016
ORF1ab/nsp8156I156VAtcGtc11P.20.000187
ORF1ab/nsp8156I156VAtcGtc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.