CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 153

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp8153L153LL4095LsynttGttA3963050.77020212548-12550
ORF1ab/nsp8153L153LL4095LsynTtgCtg396910.22979812548-12550
ORF1ab/nsp8153L153VL4095VnonsynTtgGtg6363112548-12550
ORF1ab/nsp8153L153delL4095deldelTTG---2525112548-12550
ORF1ab/nsp8153L153FL4095FnonsynttGttT16140.87512548-12550
ORF1ab/nsp8153L153FL4095FnonsynttGttC1620.12512548-12550
ORF1ab/nsp8153L153SL4095SnonsyntTgtCg66112548-12550
ORF1ab/nsp8153L153IL4095InonsynTtGAtA540.812548-12550
ORF1ab/nsp8153L153IL4095InonsynTtGAtT510.212548-12550
ORF1ab/nsp8153L153EL4095EnonsynTTGGAA22112548-12550
ORF1ab/nsp8153L153RL4095RnonsynTTGCGA22112548-12550
ORF1ab/nsp8153L153TL4095TnonsynTTgACg22112548-12550
ORF1ab/nsp8153L153del2L4095del2deltTGt--22112548-12550
ORF1ab/nsp8153L153WL4095WnonsyntTgtGg11112548-12550
ORF1ab/nsp8153L153XL4095XnonsyntTgtAg11112548-12550
ORF1ab/nsp8153L153PL4095PnonsynTTgCCg11112548-12550
ORF1ab/nsp8153L153del1L4095del1delTtg-tg11112548-12550

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp8153L153LttGttA305396All0.000058
ORF1ab/nsp8153L153LTtgCtg91396All0.000017
ORF1ab/nsp8153L153LttGttA9494B.1.1900.94
ORF1ab/nsp8153L153LttGttA6577B.1.1.70.000058
ORF1ab/nsp8153L153LTtgCtg1277B.1.1.70.000011
ORF1ab/nsp8153L153VTtgGtg6363All0.000012
ORF1ab/nsp8153L153LttGttA3133AY.40.000048
ORF1ab/nsp8153L153LTtgCtg233AY.40.000003
ORF1ab/nsp8153L153VTtgGtg3232B.1.2210.002273
ORF1ab/nsp8153L153LTtgCtg2627AY.430.000115
ORF1ab/nsp8153L153LttGttA127AY.430.000004
ORF1ab/nsp8153L153VTtgGtg2727B.1.2400.00582
ORF1ab/nsp8153L153delTTG---2525All0.000005
ORF1ab/nsp8153L153LTtgCtg1621B.1.20.000141
ORF1ab/nsp8153L153LttGttA521B.1.20.000044
ORF1ab/nsp8153L153LttGttA1321B.1.617.20.000049
ORF1ab/nsp8153L153LTtgCtg821B.1.617.20.00003
ORF1ab/nsp8153L153FttGttT1416All0.000003
ORF1ab/nsp8153L153FttGttC216All0
ORF1ab/nsp8153L153LttGttA1616AY.290.000252
ORF1ab/nsp8153L153LttGttA1212B.1.177.790.028103
ORF1ab/nsp8153L153delTTG---77B.1.1.70.000006
ORF1ab/nsp8153L153StTgtCg66All0.000001
ORF1ab/nsp8153L153LTtgCtg66AY.1000.000276
ORF1ab/nsp8153L153LttGttA66AY.1030.000037
ORF1ab/nsp8153L153LttGttA56AY.440.00003
ORF1ab/nsp8153L153LTtgCtg16AY.440.000006
ORF1ab/nsp8153L153LttGttA66B.1.10.000109
ORF1ab/nsp8153L153LTtgCtg36P.10.000047
ORF1ab/nsp8153L153LttGttA36P.10.000047
ORF1ab/nsp8153L153ITtGAtA45All0.000001
ORF1ab/nsp8153L153ITtGAtT15All0
ORF1ab/nsp8153L153ITtGAtA440.222222
ORF1ab/nsp8153L153LttGttA44AY.1020.000106
ORF1ab/nsp8153L153LTtgCtg24AY.1190.000071
ORF1ab/nsp8153L153LttGttA24AY.1190.000071
ORF1ab/nsp8153L153LttGttA44AY.470.000124
ORF1ab/nsp8153L153LttGttA44B.10.000037
ORF1ab/nsp8153L153FttGttT44B.10.000037
ORF1ab/nsp8153L153LTtgCtg24B.1.4000.000858
ORF1ab/nsp8153L153LttGttA24B.1.4000.000858
ORF1ab/nsp8153L153LttGttA33AY.20.001068
ORF1ab/nsp8153L153LttGttA33AY.250.000018
ORF1ab/nsp8153L153LttGttA23AY.99.20.000184
ORF1ab/nsp8153L153LTtgCtg13AY.99.20.000092
ORF1ab/nsp8153L153LTtgCtg33B.1.1.3010.003538
ORF1ab/nsp8153L153LttGttA33B.1.1770.00004
ORF1ab/nsp8153L153RTTGCGA220.111111
ORF1ab/nsp8153L153ETTGGAA220.111111
ORF1ab/nsp8153L153del2tTGt--22All0
ORF1ab/nsp8153L153TTTgACg22All0
ORF1ab/nsp8153L153RTTGCGA22All0
ORF1ab/nsp8153L153ETTGGAA22All0
ORF1ab/nsp8153L153LttGttA22AY.110.002677
ORF1ab/nsp8153L153delTTG---22AY.250.000012
ORF1ab/nsp8153L153LttGttA22AY.30.00002
ORF1ab/nsp8153L153LttGttA22AY.340.000194
ORF1ab/nsp8153L153LttGttA22AY.420.00008
ORF1ab/nsp8153L153delTTG---22AY.430.000009
ORF1ab/nsp8153L153delTTG---22AY.750.000112
ORF1ab/nsp8153L153LttGttA22AY.9.10.000167
ORF1ab/nsp8153L153VTtgGtg22B.10.000018
ORF1ab/nsp8153L153StTgtCg22B.1.1.70.000002
ORF1ab/nsp8153L153FttGttT12B.1.1.70.000001
ORF1ab/nsp8153L153FttGttC12B.1.1.70.000001
ORF1ab/nsp8153L153del2tTGt--22B.1.20.000018
ORF1ab/nsp8153L153LttGttA22B.1.2430.000139
ORF1ab/nsp8153L153LTtgCtg22B.1.2580.000133
ORF1ab/nsp8153L153FttGttT22B.1.617.20.000008
ORF1ab/nsp8153L153LttGttA11A0.000387
ORF1ab/nsp8153L153LTtgCtg11A.210.00277
ORF1ab/nsp8153L153VTtgGtg11AD.20.000219
ORF1ab/nsp8153L153XtTgtAg11All0
ORF1ab/nsp8153L153WtTgtGg11All0
ORF1ab/nsp8153L153PTTgCCg11All0
ORF1ab/nsp8153L153del1Ttg-tg11All0
ORF1ab/nsp8153L153StTgtCg11AY.1110.000183
ORF1ab/nsp8153L153LTtgCtg11AY.1130.000142
ORF1ab/nsp8153L153ITtGAtT11AY.1180.000063
ORF1ab/nsp8153L153LttGttA11AY.260.000028
ORF1ab/nsp8153L153LttGttA11AY.34.10.00051
ORF1ab/nsp8153L153LttGttA11AY.380.000499
ORF1ab/nsp8153L153LttGttA11AY.390.000025
ORF1ab/nsp8153L153delTTG---11AY.4.50.000107
ORF1ab/nsp8153L153del1Ttg-tg11AY.440.000006
ORF1ab/nsp8153L153PTTgCCg11AY.440.000006
ORF1ab/nsp8153L153StTgtCg11AY.440.000006
ORF1ab/nsp8153L153delTTG---11AY.46.20.000635
ORF1ab/nsp8153L153XtTgtAg11AY.610.000105
ORF1ab/nsp8153L153delTTG---11AY.650.000533
ORF1ab/nsp8153L153LTtgCtg11AY.900.000684
ORF1ab/nsp8153L153delTTG---11B.10.000009
ORF1ab/nsp8153L153TTTgACg11B.1.10.000018
ORF1ab/nsp8153L153StTgtCg11B.1.1.2690.001353
ORF1ab/nsp8153L153delTTG---11B.1.1.280.000311
ORF1ab/nsp8153L153WtTgtGg11B.1.1.3000.010753
ORF1ab/nsp8153L153LttGttA11B.1.1.330.000421
ORF1ab/nsp8153L153StTgtCg11B.1.1.4340.000349
ORF1ab/nsp8153L153delTTG---11B.1.1.4480.002033
ORF1ab/nsp8153L153TTTgACg11B.1.1.70.000001
ORF1ab/nsp8153L153FttGttT11B.1.1390.000733
ORF1ab/nsp8153L153delTTG---11B.1.1770.000013
ORF1ab/nsp8153L153FttGttT11B.1.177.170.000821
ORF1ab/nsp8153L153LTtgCtg11B.1.177.540.000606
ORF1ab/nsp8153L153LttGttA11B.1.177.860.000183
ORF1ab/nsp8153L153LTtgCtg11B.1.2360.002053
ORF1ab/nsp8153L153LTtgCtg11B.1.360.000146
ORF1ab/nsp8153L153FttGttT11B.1.3990.001934
ORF1ab/nsp8153L153LTtgCtg11B.1.4290.000024
ORF1ab/nsp8153L153VTtgGtg11B.1.4590.004082
ORF1ab/nsp8153L153FttGttT11B.1.5260.000024
ORF1ab/nsp8153L153LttGttA11B.1.5260.000024
ORF1ab/nsp8153L153FttGttT11B.1.5650.00081
ORF1ab/nsp8153L153delTTG---11B.1.617.20.000004
ORF1ab/nsp8153L153delTTG---11B.340.013699
ORF1ab/nsp8153L153FttGttT11B.60.00091
ORF1ab/nsp8153L153delTTG---11C.360.000911
ORF1ab/nsp8153L153FttGttC11C.370.000116
ORF1ab/nsp8153L153FttGttT11D.20.000075
ORF1ab/nsp8153L153delTTG---11N.40.004255
ORF1ab/nsp8153L153LttGttA11P.20.000187
ORF1ab/nsp8153L153delTTG---11Q.80.000165