CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 152 | A152A | A4094A | syn | gcA | gcG | 671 | 498 | 0.742176 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152A | A4094A | syn | gcA | gcT | 671 | 118 | 0.175857 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152A | A4094A | syn | gcA | gcC | 671 | 55 | 0.0819672 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152V | A4094V | nonsyn | gCa | gTa | 343 | 343 | 1 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152T | A4094T | nonsyn | Gca | Aca | 194 | 194 | 1 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152S | A4094S | nonsyn | Gca | Tca | 111 | 111 | 1 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152del1 | A4094del1 | del | Gca | -ca | 79 | 79 | 1 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152del | A4094del | del | GCA | --- | 28 | 28 | 1 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152E | A4094E | nonsyn | gCa | gAa | 9 | 9 | 1 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152del2 | A4094del2 | del | GCa | --a | 3 | 2 | 0.666667 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152del2 | A4094del2 | del | gCA | g-- | 3 | 1 | 0.333333 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152K | A4094K | nonsyn | GCa | AAa | 2 | 2 | 1 | 12545-12547 |
ORF1ab/nsp8 | 152 | A152G | A4094G | nonsyn | gCa | gGa | 1 | 1 | 1 | 12545-12547 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 498 | 671 | All | 0.000095 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 118 | 671 | All | 0.000023 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcC | 55 | 671 | All | 0.000011 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 343 | 343 | All | 0.000066 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 209 | 209 | B.1.177 | 0.002752 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 194 | 194 | All | 0.000037 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 111 | 111 | All | 0.000021 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 85 | 85 | B.1.2 | 0.000748 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 41 | 82 | B.1.1.7 | 0.000037 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcC | 22 | 82 | B.1.1.7 | 0.00002 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 19 | 82 | B.1.1.7 | 0.000017 |
ORF1ab/nsp8 | 152 | A152del1 | Gca | -ca | 79 | 79 | All | 0.000015 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 70 | 70 | AY.4.2 | 0.001518 |
ORF1ab/nsp8 | 152 | A152del1 | Gca | -ca | 66 | 66 | B.1.1.7 | 0.000059 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 58 | 58 | B.1.36.20 | 0.983051 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 57 | 57 | B.1.1.326 | 0.100352 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 51 | 51 | B.1.1.7 | 0.000046 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 50 | 50 | B.1.36 | 0.007295 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 32 | 32 | AY.4 | 0.00005 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 29 | 29 | P.1.14 | 0.001386 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 28 | 28 | All | 0.000005 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcC | 25 | 25 | B.1.258.17 | 0.002599 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 23 | 23 | B.1 | 0.000211 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 23 | 23 | P.1 | 0.000362 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 10 | 20 | AY.103 | 0.000062 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 10 | 20 | AY.103 | 0.000062 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 20 | 20 | AY.3 | 0.000199 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 16 | 16 | B.1.1.369 | 0.00714 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 10 | 11 | AY.3 | 0.000099 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcC | 1 | 11 | AY.3 | 0.00001 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 6 | 11 | AY.44 | 0.000037 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 5 | 11 | AY.44 | 0.00003 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 11 | 11 | P.1.16 | 0.004115 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp8 | 152 | A152E | gCa | gAa | 9 | 9 | All | 0.000002 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 6 | 9 | AY.4 | 0.000009 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcC | 2 | 9 | AY.4 | 0.000003 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 1 | 9 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 9 | 9 | AY.66 | 0.009626 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 9 | 9 | AY.74 | 0.001041 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 8 | 8 | AY.64 | 0.004762 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 7 | 8 | B.1.617.2 | 0.000026 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 1 | 8 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 7 | 7 | B.1.177.19 | 0.010014 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 7 | 7 | B.1.537 | 0.14 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 3 | 5 | AY.25 | 0.000018 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcC | 2 | 5 | AY.25 | 0.000012 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 4 | 5 | B.1 | 0.000037 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 5 | 5 | B.1.1.153 | 0.005476 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp8 | 152 | A152E | gCa | gAa | 4 | 4 | 0.222222 | |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp8 | 152 | A152del2 | GCa | --a | 2 | 3 | All | 0 |
ORF1ab/nsp8 | 152 | A152del2 | gCA | g-- | 1 | 3 | All | 0 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp8 | 152 | A152del1 | Gca | -ca | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp8 | 152 | A152del1 | Gca | -ca | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp8 | 152 | A152K | GCa | AAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 152 | A152K | GCa | AAa | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcC | 1 | 2 | AY.118 | 0.000063 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 2 | AY.118 | 0.000063 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp8 | 152 | A152del1 | Gca | -ca | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp8 | 152 | A152E | gCa | gAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp8 | 152 | A152del1 | Gca | -ca | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp8 | 152 | A152G | gCa | gGa | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp8 | 152 | A152E | gCa | gAa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp8 | 152 | A152del2 | GCa | --a | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp8 | 152 | A152G | gCa | gGa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | B.1.1.324 | 0.052632 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp8 | 152 | A152del1 | Gca | -ca | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcG | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp8 | 152 | A152del1 | Gca | -ca | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp8 | 152 | A152A | gcA | gcC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp8 | 152 | A152E | gCa | gAa | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp8 | 152 | A152del2 | GCa | --a | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 152 | A152E | gCa | gAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp8 | 152 | A152T | Gca | Aca | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp8 | 152 | A152del2 | gCA | g-- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp8 | 152 | A152V | gCa | gTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp8 | 152 | A152S | Gca | Tca | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp8 | 152 | A152del | GCA | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp8 | 152 | A152del1 | Gca | -ca | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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