CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 148

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp8	148	T148I	T4090I	nonsyn	aCt	aTt	10123	10123	1	12533-12535
ORF1ab/nsp8	148	T148A	T4090A	nonsyn	Act	Gct	537	537	1	12533-12535
ORF1ab/nsp8	148	T148T	T4090T	syn	acT	acC	122	80	0.655738	12533-12535
ORF1ab/nsp8	148	T148T	T4090T	syn	acT	acG	122	34	0.278689	12533-12535
ORF1ab/nsp8	148	T148T	T4090T	syn	acT	acA	122	8	0.0655738	12533-12535
ORF1ab/nsp8	148	T148N	T4090N	nonsyn	aCt	aAt	91	88	0.967033	12533-12535
ORF1ab/nsp8	148	T148N	T4090N	nonsyn	aCT	aAC	91	3	0.032967	12533-12535
ORF1ab/nsp8	148	T148del	T4090del	del	ACT	---	35	35	1	12533-12535
ORF1ab/nsp8	148	T148S	T4090S	nonsyn	Act	Tct	4	3	0.75	12533-12535
ORF1ab/nsp8	148	T148S	T4090S	nonsyn	aCt	aGt	4	1	0.25	12533-12535
ORF1ab/nsp8	148	T148V	T4090V	nonsyn	ACT	GTC	3	2	0.666667	12533-12535
ORF1ab/nsp8	148	T148del2	T4090del2	del	aCT	a--	3	2	0.666667	12533-12535
ORF1ab/nsp8	148	T148del2	T4090del2	del	ACt	--t	3	1	0.333333	12533-12535
ORF1ab/nsp8	148	T148V	T4090V	nonsyn	ACt	GTt	3	1	0.333333	12533-12535
ORF1ab/nsp8	148	T148Q	T4090Q	nonsyn	ACT	CAA	2	2	1	12533-12535
ORF1ab/nsp8	148	T148P	T4090P	nonsyn	Act	Cct	2	2	1	12533-12535
ORF1ab/nsp8	148	T148del1	T4090del1	del	Act	-ct	1	1	1	12533-12535
ORF1ab/nsp8	148	T148F	T4090F	nonsyn	ACt	TTt	1	1	1	12533-12535

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp8	148	T148I	aCt	aTt	10123	10123	All	0.001936
ORF1ab/nsp8	148	T148I	aCt	aTt	1699	1699	C.36.3	0.963698
ORF1ab/nsp8	148	T148I	aCt	aTt	1662	1662	B.1.1.7	0.001488
ORF1ab/nsp8	148	T148I	aCt	aTt	1001	1001	AY.4	0.001558
ORF1ab/nsp8	148	T148I	aCt	aTt	843	843	C.36	0.76776
ORF1ab/nsp8	148	T148I	aCt	aTt	754	754	AY.39	0.018632
ORF1ab/nsp8	148	T148A	Act	Gct	537	537	All	0.000103
ORF1ab/nsp8	148	T148I	aCt	aTt	448	448	AY.101	0.219716
ORF1ab/nsp8	148	T148I	aCt	aTt	329	329	C.36.3.1	0.894022
ORF1ab/nsp8	148	T148I	aCt	aTt	289	289	B.1.617.2	0.001088
ORF1ab/nsp8	148	T148I	aCt	aTt	241	241	C.36.1	1
ORF1ab/nsp8	148	T148A	Act	Gct	159	159	B.1.160	0.004959
ORF1ab/nsp8	148	T148I	aCt	aTt	147	147	B.1.313	0.967105
ORF1ab/nsp8	148	T148I	aCt	aTt	135	135	B.1.621	0.01195
ORF1ab/nsp8	148	T148T	acT	acC	80	122	All	0.000015
ORF1ab/nsp8	148	T148T	acT	acG	34	122	All	0.000007
ORF1ab/nsp8	148	T148T	acT	acA	8	122	All	0.000002
ORF1ab/nsp8	148	T148I	aCt	aTt	120	120	B.1	0.001099
ORF1ab/nsp8	148	T148A	Act	Gct	106	106	B.1.1.7	0.000095
ORF1ab/nsp8	148	T148I	aCt	aTt	101	101	B.1.177	0.00133
ORF1ab/nsp8	148	T148N	aCt	aAt	88	91	All	0.000017
ORF1ab/nsp8	148	T148N	aCT	aAC	3	91	All	0.000001
ORF1ab/nsp8	148	T148I	aCt	aTt	89	89	AY.100	0.004095
ORF1ab/nsp8	148	T148I	aCt	aTt	82	82	AY.5	0.001693
ORF1ab/nsp8	148	T148I	aCt	aTt	81	81	AY.103	0.000503
ORF1ab/nsp8	148	T148I	aCt	aTt	80	80	B.1.429	0.001882
ORF1ab/nsp8	148	T148I	aCt	aTt	73	73	B.1.2	0.000643
ORF1ab/nsp8	148	T148I	aCt	aTt	71	71	B.1.240	0.015305
ORF1ab/nsp8	148	T148I	aCt	aTt	66	66	AY.3	0.000656
ORF1ab/nsp8	148	T148I	aCt	aTt	66	66	AY.44	0.000402
ORF1ab/nsp8	148	T148A	Act	Gct	59	59	AY.44	0.000359
ORF1ab/nsp8	148	T148I	aCt	aTt	58	58	B.1.1	0.001052
ORF1ab/nsp8	148	T148I	aCt	aTt	57	57	AY.43	0.000253
ORF1ab/nsp8	148	T148I	aCt	aTt	55	55	AY.120.1	0.017657
ORF1ab/nsp8	148	T148I	aCt	aTt	55	55	AY.25	0.000331
ORF1ab/nsp8	148	T148I	aCt	aTt	51	51	P.1	0.000803
ORF1ab/nsp8	148	T148I	aCt	aTt	50	50	B.1.1.222	0.0102
ORF1ab/nsp8	148	T148I	aCt	aTt	49	49	B.1.526	0.001152
ORF1ab/nsp8	148	T148I	aCt	aTt	48	48	B.28	0.157377
ORF1ab/nsp8	148	T148I	aCt	aTt	44	44	AY.26	0.001246
ORF1ab/nsp8	148	T148I	aCt	aTt	40	40	B.1.36	0.005836
ORF1ab/nsp8	148	T148I	aCt	aTt	37	37	AY.116	0.010611
ORF1ab/nsp8	148	T148I	aCt	aTt	37	37	B.1.311	0.010159
ORF1ab/nsp8	148	T148del	ACT	---	35	35	All	0.000007
ORF1ab/nsp8	148	T148A	Act	Gct	31	31	B.1.525	0.003508
ORF1ab/nsp8	148	T148T	acT	acC	30	30	AY.4	0.000047
ORF1ab/nsp8	148	T148I	aCt	aTt	29	29	C.36.2	1
ORF1ab/nsp8	148	T148I	aCt	aTt	28	28	AY.102	0.000742
ORF1ab/nsp8	148	T148I	aCt	aTt	26	26	B.1.521	0.129353
ORF1ab/nsp8	148	T148I	aCt	aTt	25	25	AY.46	0.002602
ORF1ab/nsp8	148	T148I	aCt	aTt	25	25	B.1.265	0.031766
ORF1ab/nsp8	148	T148I	aCt	aTt	24	24	AY.99.2	0.002212
ORF1ab/nsp8	148	T148I	aCt	aTt	24	24	B	0.003067
ORF1ab/nsp8	148	T148I	aCt	aTt	23	23	AY.111	0.004212
ORF1ab/nsp8	148	T148I	aCt	aTt	23	23	B.1.1.242	1
ORF1ab/nsp8	148	T148I	aCt	aTt	23	23	B.1.1.378	0.167883
ORF1ab/nsp8	148	T148I	aCt	aTt	23	23	B.1.177.53	0.055024
ORF1ab/nsp8	148	T148I	aCt	aTt	21	21	A.2.5	0.010479
ORF1ab/nsp8	148	T148I	aCt	aTt	21	21	AY.119	0.000741
ORF1ab/nsp8	148	T148T	acT	acC	19	20	AY.118	0.00119
ORF1ab/nsp8	148	T148T	acT	acA	1	20	AY.118	0.000063
ORF1ab/nsp8	148	T148I	aCt	aTt	20	20	AY.34	0.001939
ORF1ab/nsp8	148	T148I	aCt	aTt	19	19	AY.118	0.00119
ORF1ab/nsp8	148	T148I	aCt	aTt	17	17	AY.4.2	0.000369
ORF1ab/nsp8	148	T148N	aCt	aAt	17	17	B.1.1.214	0.000943
ORF1ab/nsp8	148	T148I	aCt	aTt	17	17	B.1.206	0.013866
ORF1ab/nsp8	148	T148I	aCt	aTt	17	17	B.1.351	0.000505
ORF1ab/nsp8	148	T148I	aCt	aTt	16	16	AY.106	0.005358
ORF1ab/nsp8	148	T148A	Act	Gct	16	16	AY.4	0.000025
ORF1ab/nsp8	148	T148I	aCt	aTt	16	16	B.1.177.81	0.003029
ORF1ab/nsp8	148	T148I	aCt	aTt	16	16	B.1.627	0.032323
ORF1ab/nsp8	148	T148I	aCt	aTt	15	15	AY.6	0.000617
ORF1ab/nsp8	148	T148I	aCt	aTt	15	15	C.17	0.833333
ORF1ab/nsp8	148	T148I	aCt	aTt	15	15	R.1	0.00135
ORF1ab/nsp8	148	T148I	aCt	aTt	14	14	AY.121	0.001894
ORF1ab/nsp8	148	T148I	aCt	aTt	14	14	B.1.258	0.000932
ORF1ab/nsp8	148	T148T	acT	acG	8	14	B.1.617.2	0.00003
ORF1ab/nsp8	148	T148T	acT	acC	6	14	B.1.617.2	0.000023
ORF1ab/nsp8	148	T148I	aCt	aTt	13	13	AY.20	0.000505
ORF1ab/nsp8	148	T148I	aCt	aTt	13	13	AY.47	0.000404
ORF1ab/nsp8	148	T148I	aCt	aTt	13	13	B.1.243	0.000905
ORF1ab/nsp8	148	T148I	aCt	aTt	12	12	AY.42	0.000483
ORF1ab/nsp8	148	T148del	ACT	---	12	12	B.1.1.7	0.000011
ORF1ab/nsp8	148	T148I	aCt	aTt	11	11	AY.117	0.00093
ORF1ab/nsp8	148	T148I	aCt	aTt	11	11	AY.54	0.001049
ORF1ab/nsp8	148	T148I	aCt	aTt	11	11	B.1.1.1	0.003594
ORF1ab/nsp8	148	T148I	aCt	aTt	11	11	B.1.1.519	0.000437
ORF1ab/nsp8	148	T148I	aCt	aTt	11	11	B.1.221	0.000781
ORF1ab/nsp8	148	T148N	aCt	aAt	11	11	B.1.400	0.004719
ORF1ab/nsp8	148	T148I	aCt	aTt	11	11	B.1.427	0.000555
ORF1ab/nsp8	148	T148I	aCt	aTt	10	10	B.1.1.176	0.004394
ORF1ab/nsp8	148	T148N	aCt	aAt	9	10	B.1.1.7	0.000008
ORF1ab/nsp8	148	T148N	aCT	aAC	1	10	B.1.1.7	0.000001
ORF1ab/nsp8	148	T148A	Act	Gct	10	10	B.1.617.2	0.000038
ORF1ab/nsp8	148	T148I	aCt	aTt	9	9	AY.36	0.001334
ORF1ab/nsp8	148	T148A	Act	Gct	9	9	B.1	0.000082
ORF1ab/nsp8	148	T148I	aCt	aTt	9	9	B.1.1.294	0.011392
ORF1ab/nsp8	148	T148T	acT	acC	6	9	B.1.1.7	0.000005
ORF1ab/nsp8	148	T148T	acT	acG	2	9	B.1.1.7	0.000002
ORF1ab/nsp8	148	T148T	acT	acA	1	9	B.1.1.7	0.000001
ORF1ab/nsp8	148	T148A	Act	Gct	9	9	P.1	0.000142
ORF1ab/nsp8	148	T148I	aCt	aTt	9	9	Q.3	0.001305
ORF1ab/nsp8	148	T148I	aCt	aTt	8	8	AY.14	0.000704
ORF1ab/nsp8	148	T148A	Act	Gct	8	8	B.1.2	0.00007
ORF1ab/nsp8	148	T148I	aCt	aTt	8	8	B.1.234	0.001056
ORF1ab/nsp8	148	T148I	aCt	aTt	8	8	B.1.525	0.000905
ORF1ab/nsp8	148	T148T	acT	acG	8	8	B.1.637	0.000585
ORF1ab/nsp8	148	T148A	Act	Gct	7	7	AY.106	0.002344
ORF1ab/nsp8	148	T148I	aCt	aTt	7	7	AY.29	0.00011
ORF1ab/nsp8	148	T148I	aCt	aTt	7	7	AY.61	0.000733
ORF1ab/nsp8	148	T148I	aCt	aTt	7	7	B.1.1.28	0.002179
ORF1ab/nsp8	148	T148I	aCt	aTt	7	7	B.1.1.414	1
ORF1ab/nsp8	148	T148I	aCt	aTt	7	7	B.1.160	0.000218
ORF1ab/nsp8	148	T148I	aCt	aTt	7	7	B.1.177.7	0.001154
ORF1ab/nsp8	148	T148I	aCt	aTt	7	7	B.1.177.83	0.01037
ORF1ab/nsp8	148	T148I	aCt	aTt	7	7	B.1.258.3	0.011725
ORF1ab/nsp8	148	T148I	aCt	aTt	7	7	C.37	0.000812
ORF1ab/nsp8	148	T148I	aCt	aTt	7	7	P.7	0.030568
ORF1ab/nsp8	148	T148I	aCt	aTt	7	7	Q.8	0.001154
ORF1ab/nsp8	148	T148N	aCt	aAt	6	6	AY.20	0.000233
ORF1ab/nsp8	148	T148I	aCt	aTt	6	6	AY.24	0.002586
ORF1ab/nsp8	148	T148I	aCt	aTt	6	6	AY.29.1	0.001323
ORF1ab/nsp8	148	T148I	aCt	aTt	6	6	AY.39.1	0.000238
ORF1ab/nsp8	148	T148I	aCt	aTt	6	6	AY.46.6	0.000433
ORF1ab/nsp8	148	T148I	aCt	aTt	6	6	B.1.1.434	0.002091
ORF1ab/nsp8	148	T148I	aCt	aTt	6	6	B.1.470	0.008427
ORF1ab/nsp8	148	T148I	aCt	aTt	6	6	B.1.546	0.022222
ORF1ab/nsp8	148	T148I	aCt	aTt	6	6	B.1.595	0.001566
ORF1ab/nsp8	148	T148I	aCt	aTt	6	6	B.1.596	0.000523
ORF1ab/nsp8	148	T148I	aCt	aTt	6	6	C.39	0.113208
ORF1ab/nsp8	148	T148A	Act	Gct	5	5	AY.103	0.000031
ORF1ab/nsp8	148	T148N	aCt	aAt	5	5	AY.25	0.00003
ORF1ab/nsp8	148	T148I	aCt	aTt	5	5	AY.33	0.000334
ORF1ab/nsp8	148	T148A	Act	Gct	5	5	AY.43	0.000022
ORF1ab/nsp8	148	T148N	aCt	aAt	5	5	AY.43	0.000022
ORF1ab/nsp8	148	T148I	aCt	aTt	5	5	AY.46.4	0.000823
ORF1ab/nsp8	148	T148A	Act	Gct	5	5	AY.5	0.000103
ORF1ab/nsp8	148	T148A	Act	Gct	5	5	AY.7.1	0.000564
ORF1ab/nsp8	148	T148I	aCt	aTt	5	5	AY.9.1	0.000419
ORF1ab/nsp8	148	T148I	aCt	aTt	5	5	AY.9.2	0.000184
ORF1ab/nsp8	148	T148I	aCt	aTt	5	5	AY.95	0.003805
ORF1ab/nsp8	148	T148I	aCt	aTt	5	5	B.1.1.317	0.002058
ORF1ab/nsp8	148	T148A	Act	Gct	5	5	B.1.160.14	0.010593
ORF1ab/nsp8	148	T148I	aCt	aTt	5	5	B.1.23	0.030303
ORF1ab/nsp8	148	T148A	Act	Gct	5	5	B.1.258.14	0.004902
ORF1ab/nsp8	148	T148S	Act	Tct	3	4	All	0.000001
ORF1ab/nsp8	148	T148S	aCt	aGt	1	4	All	0
ORF1ab/nsp8	148	T148A	Act	Gct	4	4	AY.107	0.001864
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	AY.23	0.000279
ORF1ab/nsp8	148	T148A	Act	Gct	4	4	AY.39	0.000099
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	AY.41	0.001176
ORF1ab/nsp8	148	T148del	ACT	---	4	4	AY.43	0.000018
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	AY.5.4	0.001107
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	AY.74	0.000463
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	AY.98	0.000316
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	AY.98.1	0.000194
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	B.1.1.214	0.000222
ORF1ab/nsp8	148	T148A	Act	Gct	4	4	B.1.1.70	0.001364
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	B.1.351.2	0.00121
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	B.1.438.1	0.000429
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	B.1.575	0.001214
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	B.1.577	0.002749
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	P.1.10	0.001078
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	P.1.7	0.001277
ORF1ab/nsp8	148	T148I	aCt	aTt	4	4	Q.1	0.000505
ORF1ab/nsp8	148	T148del2	aCT	a--	2	3	All	0
ORF1ab/nsp8	148	T148V	ACT	GTC	2	3	All	0
ORF1ab/nsp8	148	T148V	ACt	GTt	1	3	All	0
ORF1ab/nsp8	148	T148del2	ACt	--t	1	3	All	0
ORF1ab/nsp8	148	T148T	acT	acG	3	3	AY.103	0.000019
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	AY.114	0.000693
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	AY.16	0.001139
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	AY.2	0.001068
ORF1ab/nsp8	148	T148A	Act	Gct	3	3	AY.25	0.000018
ORF1ab/nsp8	148	T148T	acT	acC	3	3	AY.3	0.00003
ORF1ab/nsp8	148	T148N	aCt	aAt	3	3	AY.4	0.000005
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	AY.45	0.000365
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	AY.75.1	0.000541
ORF1ab/nsp8	148	T148A	Act	Gct	3	3	AY.9.2	0.00011
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	AY.90	0.002053
ORF1ab/nsp8	148	T148T	acT	acC	2	3	B.1	0.000018
ORF1ab/nsp8	148	T148T	acT	acG	1	3	B.1	0.000009
ORF1ab/nsp8	148	T148A	Act	Gct	3	3	B.1.1	0.000054
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	B.1.1.174	0.010135
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	B.1.1.232	0.005445
ORF1ab/nsp8	148	T148N	aCt	aAt	3	3	B.1.1.28	0.000934
ORF1ab/nsp8	148	T148T	acT	acC	3	3	B.1.1.3	0.026087
ORF1ab/nsp8	148	T148A	Act	Gct	3	3	B.1.1.519	0.000119
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	B.1.177.11	0.005093
ORF1ab/nsp8	148	T148N	aCt	aAt	3	3	B.1.2	0.000026
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	B.1.239	0.003663
ORF1ab/nsp8	148	T148A	Act	Gct	3	3	B.1.243	0.000209
ORF1ab/nsp8	148	T148A	Act	Gct	3	3	B.1.258	0.0002
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	B.1.258.17	0.000312
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	B.1.36.29	0.001552
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	B.1.411	0.011111
ORF1ab/nsp8	148	T148A	Act	Gct	3	3	B.1.429	0.000071
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	B.1.617.1	0.000387
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	P.1.17	0.000485
ORF1ab/nsp8	148	T148I	aCt	aTt	3	3	P.2	0.00056
ORF1ab/nsp8	148	T148Q	ACT	CAA	2	2		0.111111
ORF1ab/nsp8	148	T148N	aCt	aAt	2	2		0.111111
ORF1ab/nsp8	148	T148V	ACT	GTC	2	2		0.111111
ORF1ab/nsp8	148	T148del2	aCT	a--	2	2		0.111111
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	A	0.000774
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	A.1	0.000564
ORF1ab/nsp8	148	T148P	Act	Cct	2	2	All	0
ORF1ab/nsp8	148	T148Q	ACT	CAA	2	2	All	0
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.10	0.00106
ORF1ab/nsp8	148	T148N	aCt	aAt	2	2	AY.110	0.000225
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.120	0.000074
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.13	0.000322
ORF1ab/nsp8	148	T148A	Act	Gct	2	2	AY.24	0.000862
ORF1ab/nsp8	148	T148T	acT	acA	1	2	AY.25	0.000006
ORF1ab/nsp8	148	T148T	acT	acG	1	2	AY.25	0.000006
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.27	0.000129
ORF1ab/nsp8	148	T148A	Act	Gct	2	2	AY.3	0.00002
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.3.1	0.000171
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.30	0.000791
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.32	0.001065
ORF1ab/nsp8	148	T148A	Act	Gct	2	2	AY.33	0.000134
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.4.2.1	0.000298
ORF1ab/nsp8	148	T148A	Act	Gct	2	2	AY.4.4	0.000818
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.4.5	0.000215
ORF1ab/nsp8	148	T148T	acT	acG	1	2	AY.43	0.000004
ORF1ab/nsp8	148	T148T	acT	acC	1	2	AY.43	0.000004
ORF1ab/nsp8	148	T148T	acT	acA	2	2	AY.44	0.000012
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.46.3	0.001867
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.5.3	0.000675
ORF1ab/nsp8	148	T148N	aCt	aAt	2	2	AY.54	0.000191
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.62	0.000871
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.65	0.001066
ORF1ab/nsp8	148	T148A	Act	Gct	2	2	AY.65	0.001066
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	AY.75	0.000112
ORF1ab/nsp8	148	T148del	ACT	---	2	2	AY.75	0.000112
ORF1ab/nsp8	148	T148T	acT	acG	2	2	AY.9.1	0.000167
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.1.153	0.002191
ORF1ab/nsp8	148	T148N	aCt	aAt	2	2	B.1.1.157	0.001826
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.1.25	0.001137
ORF1ab/nsp8	148	T148T	acT	acG	2	2	B.1.1.25	0.001137
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.1.285	0.013072
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.1.316	0.00185
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.1.33	0.000842
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.1.372	0.001377
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.1.380	0.019608
ORF1ab/nsp8	148	T148A	Act	Gct	2	2	B.1.1.389	0.012121
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.1.420	0.002012
ORF1ab/nsp8	148	T148N	aCt	aAt	2	2	B.1.1.50	0.001358
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.1.523	0.003125
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.1.62	0.054054
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.1.70	0.000682
ORF1ab/nsp8	148	T148A	Act	Gct	2	2	B.1.160.15	0.009901
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.167	0.015625
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.170	0.008621
ORF1ab/nsp8	148	T148A	Act	Gct	2	2	B.1.177	0.000026
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.177.12	0.000303
ORF1ab/nsp8	148	T148T	acT	acA	1	2	B.1.2	0.000009
ORF1ab/nsp8	148	T148T	acT	acG	1	2	B.1.2	0.000009
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.214	0.007326
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.258.7	0.003824
ORF1ab/nsp8	148	T148N	aCt	aAt	2	2	B.1.351	0.000059
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.351.3	0.001753
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.36.16	0.002849
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.36.18	0.00084
ORF1ab/nsp8	148	T148A	Act	Gct	2	2	B.1.462	0.014493
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.540	0.019417
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.565	0.001621
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.582	0.000981
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.588	0.00182
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.591	0.021277
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.609	0.000959
ORF1ab/nsp8	148	T148N	aCt	aAt	2	2	B.1.617.2	0.000008
ORF1ab/nsp8	148	T148A	Act	Gct	2	2	B.1.621	0.000177
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.637	0.000146
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	B.1.81	0.042553
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	D.2	0.00015
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	N.5	0.003534
ORF1ab/nsp8	148	T148T	acT	acC	2	2	P.1	0.000032
ORF1ab/nsp8	148	T148A	Act	Gct	2	2	P.1.15	0.000465
ORF1ab/nsp8	148	T148I	aCt	aTt	2	2	P.1.15	0.000465
ORF1ab/nsp8	148	T148del1	Act	-ct	1	1	A	0.000387
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	A.2	0.000662
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	A.27	0.001656
ORF1ab/nsp8	148	T148del1	Act	-ct	1	1	All	0
ORF1ab/nsp8	148	T148F	ACt	TTt	1	1	All	0
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AU.2	0.002421
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AU.3	0.00211
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	AY.1	0.000396
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.1	0.000396
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.102	0.000027
ORF1ab/nsp8	148	T148T	acT	acA	1	1	AY.102	0.000027
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.105	0.000643
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.108	0.001103
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.109	0.00074
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.110	0.000113
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.113	0.000142
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.116.1	0.000311
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.117	0.000085
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.118	0.000063
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	AY.120	0.000037
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.120.2	0.001285
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.14	0.000088
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.16.1	0.00047
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.23	0.00007
ORF1ab/nsp8	148	T148T	acT	acG	1	1	AY.23	0.00007
ORF1ab/nsp8	148	T148del	ACT	---	1	1	AY.25	0.000006
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	AY.26	0.000028
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.26	0.000028
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.29	0.000016
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.36	0.000148
ORF1ab/nsp8	148	T148del2	ACt	--t	1	1	AY.4	0.000002
ORF1ab/nsp8	148	T148del	ACT	---	1	1	AY.4	0.000002
ORF1ab/nsp8	148	T148T	acT	acC	1	1	AY.4.2.1	0.000149
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.4.3	0.000842
ORF1ab/nsp8	148	T148del	ACT	---	1	1	AY.4.5	0.000107
ORF1ab/nsp8	148	T148T	acT	acC	1	1	AY.46	0.000104
ORF1ab/nsp8	148	T148del	ACT	---	1	1	AY.46.2	0.000635
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.47	0.000031
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	AY.47	0.000031
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.5.3	0.000337
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.5.4	0.000277
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.51	0.000909
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.53	0.000288
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.56	0.001605
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	AY.61	0.000105
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.63	0.000387
ORF1ab/nsp8	148	T148del	ACT	---	1	1	AY.65	0.000533
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.66	0.00107
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.68	0.000274
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.69	0.000187
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.7	0.000196
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.70	0.000209
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.70	0.000209
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.73	0.000665
ORF1ab/nsp8	148	T148T	acT	acG	1	1	AY.75	0.000056
ORF1ab/nsp8	148	T148del	ACT	---	1	1	AY.78	0.001541
ORF1ab/nsp8	148	T148del	ACT	---	1	1	AY.8	0.000606
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.84	0.000437
ORF1ab/nsp8	148	T148T	acT	acC	1	1	AY.85	0.000427
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.87	0.000833
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.9	0.000068
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.9.1	0.000084
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.9.2.1	0.001976
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.91.1	0.004065
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.92	0.000287
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	AY.92	0.000287
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.98	0.000079
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	AY.98	0.000079
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	AY.98.1	0.000048
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	B.1	0.000009
ORF1ab/nsp8	148	T148del	ACT	---	1	1	B.1	0.000009
ORF1ab/nsp8	148	T148N	aCT	aAC	1	1	B.1.1	0.000018
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.1.189	0.001513
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.189	0.001513
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.207	0.001182
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.1.214	0.000055
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.217	0.003636
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.1.222	0.000204
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.279	0.001121
ORF1ab/nsp8	148	T148del	ACT	---	1	1	B.1.1.28	0.000311
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.280	0.003086
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	B.1.1.284	0.000107
ORF1ab/nsp8	148	T148T	acT	acC	1	1	B.1.1.306	0.000438
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.31	0.066667
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.326	0.001761
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.332	0.03125
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.336	0.016667
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.353	0.020833
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.354	0.004386
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	B.1.1.369	0.000446
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.374	0.002375
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.39	0.00051
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.1.39	0.00051
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.409	0.002833
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.416	0.000905
ORF1ab/nsp8	148	T148T	acT	acC	1	1	B.1.1.419	0.007407
ORF1ab/nsp8	148	T148del	ACT	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.462	0.008621
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.1.526	0.003546
ORF1ab/nsp8	148	T148P	Act	Cct	1	1	B.1.1.7	0.000001
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.111	0.001175
ORF1ab/nsp8	148	T148V	ACt	GTt	1	1	B.1.160	0.000031
ORF1ab/nsp8	148	T148T	acT	acC	1	1	B.1.160	0.000031
ORF1ab/nsp8	148	T148S	Act	Tct	1	1	B.1.160	0.000031
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.160.32	0.004292
ORF1ab/nsp8	148	T148del	ACT	---	1	1	B.1.177	0.000013
ORF1ab/nsp8	148	T148S	Act	Tct	1	1	B.1.177	0.000013
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.177.21	0.000076
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.177.33	0.001645
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.177.42	0.000894
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.177.43	0.001477
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.177.44	0.000519
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.177.44	0.000519
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.177.54	0.000606
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.177.75	0.001041
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.177.75	0.001041
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.177.8	0.000752
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.177.86	0.000183
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.177.86	0.000183
ORF1ab/nsp8	148	T148del	ACT	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.241	0.000812
ORF1ab/nsp8	148	T148T	acT	acG	1	1	B.1.258	0.000067
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.258.12	0.007874
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.268	0.010417
ORF1ab/nsp8	148	T148P	Act	Cct	1	1	B.1.3	0.002618
ORF1ab/nsp8	148	T148S	aCt	aGt	1	1	B.1.320	0.001245
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.324	0.001605
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.349	0.000715
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.349	0.000715
ORF1ab/nsp8	148	T148T	acT	acA	1	1	B.1.351	0.00003
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.351.5	0.0006
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.36.1	0.00114
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.36.10	0.004785
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.36.22	0.001208
ORF1ab/nsp8	148	T148T	acT	acC	1	1	B.1.36.29	0.000517
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	B.1.36.31	0.001751
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.36.8	0.001
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.361	0.001289
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.369	0.000285
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.375	0.00082
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.378	0.006849
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.390	0.010638
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.397	0.004854
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.398	0.002976
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.409	0.000781
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.416	0.001269
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.427	0.00005
ORF1ab/nsp8	148	T148T	acT	acG	1	1	B.1.427	0.00005
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.428	0.00102
ORF1ab/nsp8	148	T148F	ACt	TTt	1	1	B.1.429	0.000024
ORF1ab/nsp8	148	T148S	Act	Tct	1	1	B.1.429	0.000024
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.448	0.002625
ORF1ab/nsp8	148	T148T	acT	acG	1	1	B.1.466.2	0.000391
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.466.2	0.000391
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.526	0.000024
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.1.533	0.009615
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.561	0.000397
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.564	0.000426
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.568	0.001111
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.574	0.002151
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	B.1.595	0.000261
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.605	0.005952
ORF1ab/nsp8	148	T148N	aCT	aAC	1	1	B.1.617.1	0.000129
ORF1ab/nsp8	148	T148del	ACT	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.621.1	0.000506
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.631	0.003367
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.1.9.4	0.006135
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.37	0.028571
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.49	0.05
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	B.6	0.00091
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	B.6.8	0.008264
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	C.1.2	0.004255
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	C.16	0.00106
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	C.35	0.000774
ORF1ab/nsp8	148	T148del	ACT	---	1	1	C.36	0.000911
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	C.37	0.000116
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	L.3	0.003546
ORF1ab/nsp8	148	T148del	ACT	---	1	1	N.4	0.004255
ORF1ab/nsp8	148	T148N	aCt	aAt	1	1	P.1	0.000016
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	P.1.1	0.000318
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	P.1.12	0.000484
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	P.1.14	0.000048
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	P.1.16	0.000374
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	P.1.2	0.001156
ORF1ab/nsp8	148	T148T	acT	acC	1	1	P.2	0.000187
ORF1ab/nsp8	148	T148del	ACT	---	1	1	Q.1	0.000126
ORF1ab/nsp8	148	T148del	ACT	---	1	1	Q.8	0.000165
ORF1ab/nsp8	148	T148A	Act	Gct	1	1	R.1	0.00009
ORF1ab/nsp8	148	T148I	aCt	aTt	1	1	W.3	0.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.