CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 145 | T145I | T4087I | nonsyn | aCa | aTa | 36663 | 36663 | 1 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145T | T4087T | syn | acA | acT | 997 | 757 | 0.759278 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145T | T4087T | syn | acA | acG | 997 | 209 | 0.209629 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145T | T4087T | syn | acA | acC | 997 | 31 | 0.0310933 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145A | T4087A | nonsyn | Aca | Gca | 154 | 153 | 0.993506 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145A | T4087A | nonsyn | AcA | GcT | 154 | 1 | 0.00649351 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145del | T4087del | del | ACA | --- | 48 | 48 | 1 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145K | T4087K | nonsyn | aCa | aAa | 18 | 18 | 1 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145V | T4087V | nonsyn | ACa | GTa | 12 | 10 | 0.833333 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145V | T4087V | nonsyn | ACA | GTT | 12 | 2 | 0.166667 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145R | T4087R | nonsyn | aCa | aGa | 5 | 5 | 1 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145P | T4087P | nonsyn | Aca | Cca | 3 | 3 | 1 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145L | T4087L | nonsyn | ACa | TTa | 3 | 2 | 0.666667 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145L | T4087L | nonsyn | ACA | CTT | 3 | 1 | 0.333333 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145X | T4087X | nonsyn | ACa | TAa | 2 | 2 | 1 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145G | T4087G | nonsyn | ACA | GGT | 2 | 1 | 0.5 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145S | T4087S | nonsyn | Aca | Tca | 2 | 1 | 0.5 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145S | T4087S | nonsyn | aCA | aGT | 2 | 1 | 0.5 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145G | T4087G | nonsyn | ACa | GGa | 2 | 1 | 0.5 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145M | T4087M | nonsyn | aCA | aTG | 1 | 1 | 1 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145del2 | T4087del2 | del | ACa | --a | 1 | 1 | 1 | 12524-12526 |
ORF1ab/nsp8 | 145 | T145del1 | T4087del1 | del | acA | ac- | 1 | 1 | 1 | 12524-12526 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 36663 | 36663 | All | 0.007012 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 10987 | 10987 | B.1.1.7 | 0.009836 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 10711 | 10711 | AY.99.2 | 0.987098 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3443 | 3443 | B.1.311 | 0.94536 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2642 | 2642 | AY.4 | 0.004112 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1946 | 1946 | B.1.279 | 0.999486 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 757 | 997 | All | 0.000145 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 209 | 997 | All | 0.00004 |
ORF1ab/nsp8 | 145 | T145T | acA | acC | 31 | 997 | All | 0.000006 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 885 | 885 | B.1.2 | 0.007793 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 587 | 587 | AY.5 | 0.012121 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 554 | 554 | Q.8 | 0.091359 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 449 | 452 | AY.43 | 0.001989 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 3 | 452 | AY.43 | 0.000013 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 449 | 449 | AY.43 | 0.001989 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 362 | 362 | B.1.617.2 | 0.001363 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 308 | 308 | AY.103 | 0.001912 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 255 | 255 | B.1.1.222 | 0.05202 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 237 | 252 | AY.4 | 0.000369 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 14 | 252 | AY.4 | 0.000022 |
ORF1ab/nsp8 | 145 | T145T | acA | acC | 1 | 252 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 236 | 236 | B.1 | 0.002162 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 227 | 227 | B.1.235 | 0.571788 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 214 | 214 | AY.44 | 0.001303 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 153 | 154 | All | 0.000029 |
ORF1ab/nsp8 | 145 | T145A | AcA | GcT | 1 | 154 | All | 0 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 125 | 125 | AY.106 | 0.041862 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 106 | 106 | AY.3 | 0.001054 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 99 | 99 | P.1 | 0.00156 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 92 | 92 | B.1.1 | 0.001669 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 81 | 81 | AY.25 | 0.000487 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 76 | 76 | B.1.1.416 | 0.068778 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 75 | 75 | AY.26 | 0.002123 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 70 | 70 | B.1.160 | 0.002183 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 66 | 66 | B.1.177.83 | 0.097778 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 64 | 64 | B.1.177 | 0.000843 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 60 | 60 | B.1.1.519 | 0.002383 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 56 | 56 | B.1.460 | 1 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 51 | 51 | B.1.234 | 0.006729 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 49 | 49 | AY.100 | 0.002254 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 48 | 48 | All | 0.000009 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 48 | 48 | AY.118 | 0.003007 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 48 | 48 | B.1.596 | 0.004183 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 29 | 47 | B.1.1.7 | 0.000026 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 12 | 47 | B.1.1.7 | 0.000011 |
ORF1ab/nsp8 | 145 | T145T | acA | acC | 6 | 47 | B.1.1.7 | 0.000005 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 46 | 46 | Q.1 | 0.005811 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 42 | 42 | AY.102 | 0.001114 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 40 | 40 | AY.29 | 0.000631 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 40 | 40 | B.1.258 | 0.002662 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 37 | 38 | B.1.177 | 0.000487 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 38 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 36 | 36 | B.1.351 | 0.00107 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 36 | 36 | B.1.429 | 0.000847 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 33 | 33 | AY.39 | 0.000815 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 31 | 31 | P.1.15 | 0.007203 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 30 | 30 | AY.119 | 0.001059 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 29 | 29 | B.1.240 | 0.006251 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 28 | 28 | AY.20 | 0.001088 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 27 | 27 | B.1.526 | 0.000635 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 26 | 26 | B.1.243 | 0.001809 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 25 | 25 | B.1.427 | 0.001262 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 24 | 24 | B.1.177.33 | 0.039474 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 23 | 23 | B.1.1.152 | 0.92 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 22 | 22 | B.1.561 | 0.008734 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 21 | 21 | B.1.1.178 | 0.875 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 21 | 21 | B.1.1.25 | 0.011939 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 21 | 21 | B.1.517 | 0.008967 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 21 | 21 | B.1.582 | 0.010304 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 16 | 20 | AY.25 | 0.000096 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 4 | 20 | AY.25 | 0.000024 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 20 | 20 | AZ.1 | 0.017346 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 19 | 19 | B.1.221 | 0.00135 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 19 | 19 | B.1.637 | 0.001388 |
ORF1ab/nsp8 | 145 | T145K | aCa | aAa | 18 | 18 | All | 0.000003 |
ORF1ab/nsp8 | 145 | T145T | acA | acC | 18 | 18 | AY.119 | 0.000636 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 18 | 18 | AY.36 | 0.002668 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 18 | 18 | B.1.139 | 0.013196 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 18 | 18 | B.1.177.73 | 0.010193 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 18 | 18 | P.1.7 | 0.005747 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 17 | 17 | AY.33 | 0.001135 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 17 | 17 | AY.99 | 0.017838 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 16 | 16 | AY.74 | 0.00185 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 16 | 16 | B | 0.002045 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 16 | 16 | B.1.177.44 | 0.008303 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 15 | 15 | AY.113 | 0.002136 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 15 | 15 | AY.53 | 0.004313 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 15 | 15 | B.1.617.1 | 0.001934 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 15 | 15 | B.40 | 0.005464 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 14 | 14 | AY.75 | 0.000784 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 14 | 14 | AY.9 | 0.000946 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 14 | 14 | B.1.451 | 0.114754 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 14 | 14 | B.1.595 | 0.003653 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 14 | 14 | C.37 | 0.001625 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 14 | 14 | P.1.14 | 0.000669 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 13 | 13 | AY.6 | 0.000535 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 13 | 13 | AY.98 | 0.001027 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 13 | 13 | Q.3 | 0.001885 |
ORF1ab/nsp8 | 145 | T145V | ACa | GTa | 10 | 12 | All | 0.000002 |
ORF1ab/nsp8 | 145 | T145V | ACA | GTT | 2 | 12 | All | 0 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 12 | 12 | AY.121 | 0.001624 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 12 | 12 | AY.5.3 | 0.004049 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 12 | 12 | B.1.1.10 | 0.013378 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 7 | 11 | AY.3 | 0.00007 |
ORF1ab/nsp8 | 145 | T145T | acA | acC | 3 | 11 | AY.3 | 0.00003 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 11 | AY.3 | 0.00001 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 11 | 11 | AY.5.3 | 0.003711 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 11 | 11 | AY.9.2 | 0.000404 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 11 | 11 | B.1.177.8 | 0.008277 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 11 | 11 | B.1.36.29 | 0.005691 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 9 | 11 | B.1.617.2 | 0.000034 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 2 | 11 | B.1.617.2 | 0.000008 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 10 | 10 | AY.3.1 | 0.000853 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 10 | 10 | AY.39.1 | 0.000396 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 10 | 10 | B.1.1.70 | 0.003411 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 10 | 10 | B.1.361 | 0.012887 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 10 | 10 | B.1.400 | 0.00429 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 9 | 9 | AY.46 | 0.000937 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 9 | 9 | AY.48 | 0.004186 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 9 | 9 | AY.84 | 0.003937 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp8 | 145 | T145V | ACa | GTa | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 9 | 9 | AZ.2 | 0.007389 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 9 | 9 | B.1.1.222 | 0.001836 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 9 | 9 | B.1.177.60 | 0.001966 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 9 | 9 | B.1.588 | 0.008189 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 8 | 8 | B.1.1.294 | 0.010127 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 8 | 8 | B.1.1.318 | 0.002414 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 8 | 8 | B.1.346 | 0.010485 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 8 | 8 | B.1.396 | 0.005646 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 7 | 7 | AY.14 | 0.000616 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 7 | 7 | AY.28 | 0.013233 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 7 | 7 | AY.46.5 | 0.001389 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 6 | 6 | AY.29.1 | 0.001323 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 6 | 6 | AY.50 | 0.004796 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 6 | 6 | AY.79 | 0.007264 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 6 | 6 | B.1.1.317 | 0.00247 |
ORF1ab/nsp8 | 145 | T145K | aCa | aAa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 6 | 6 | B.1.177.86 | 0.001101 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 6 | 6 | Q.4 | 0.002729 |
ORF1ab/nsp8 | 145 | T145R | aCa | aGa | 5 | 5 | All | 0.000001 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp8 | 145 | T145K | aCa | aAa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 3 | 5 | B.1 | 0.000027 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp8 | 145 | T145T | acA | acC | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | A | 0.001548 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | AY.55 | 0.00367 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | AY.77 | 0.00451 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | B.1.1.27 | 0.022599 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | B.1.551 | 0.005161 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | B.1.558 | 0.018265 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | A.2 | 0.001985 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp8 | 145 | T145P | Aca | Cca | 3 | 3 | All | 0.000001 |
ORF1ab/nsp8 | 145 | T145L | ACa | TTa | 2 | 3 | All | 0 |
ORF1ab/nsp8 | 145 | T145L | ACA | CTT | 1 | 3 | All | 0 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.1.160 | 0.071429 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.1.374 | 0.007126 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.1.389 | 0.018182 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.1.528 | 0.014423 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.119 | 0.031579 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.177.79 | 0.007026 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.36.22 | 0.003623 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.36.38 | 0.004926 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | B.34 | 0.041096 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 3 | 3 | P.1.9 | 0.014423 |
ORF1ab/nsp8 | 145 | T145V | ACA | GTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 145 | T145X | ACa | TAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 145 | T145L | ACa | TTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp8 | 145 | T145X | ACa | TAa | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 145 | T145G | ACa | GGa | 1 | 2 | All | 0 |
ORF1ab/nsp8 | 145 | T145S | aCA | aGT | 1 | 2 | All | 0 |
ORF1ab/nsp8 | 145 | T145S | Aca | Tca | 1 | 2 | All | 0 |
ORF1ab/nsp8 | 145 | T145G | ACA | GGT | 1 | 2 | All | 0 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AM.4 | 0.007143 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AS.2 | 0.03125 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp8 | 145 | T145K | aCa | aAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.1.507 | 0.017391 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 2 | B.1.3 | 0.002618 |
ORF1ab/nsp8 | 145 | T145G | ACA | GGT | 1 | 2 | B.1.3 | 0.002618 |
ORF1ab/nsp8 | 145 | T145G | ACa | GGa | 1 | 2 | B.1.3 | 0.002618 |
ORF1ab/nsp8 | 145 | T145A | AcA | GcT | 1 | 2 | B.1.3 | 0.002618 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.344 | 0.016393 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.36.24 | 0.012346 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.36.26 | 0.005714 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.575.1 | 0.004878 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | B.1.8 | 0.003945 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | P.6 | 0.006289 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 2 | 2 | V.1 | 0.045455 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | 0.055556 | |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp8 | 145 | T145K | aCa | aAa | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp8 | 145 | T145del2 | ACa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 145 | T145M | aCA | aTG | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 145 | T145del1 | acA | ac- | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp8 | 145 | T145P | Aca | Cca | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp8 | 145 | T145K | aCa | aAa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp8 | 145 | T145R | aCa | aGa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp8 | 145 | T145K | aCa | aAa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp8 | 145 | T145R | aCa | aGa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp8 | 145 | T145T | acA | acC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 145 | T145P | Aca | Cca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 145 | T145R | aCa | aGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp8 | 145 | T145K | aCa | aAa | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp8 | 145 | T145S | Aca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.358 | 0.034483 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.387 | 0.058824 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.450 | 0.034483 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.500 | 0.02 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp8 | 145 | T145del2 | ACa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 145 | T145V | ACa | GTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.167 | 0.007812 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.177.30 | 0.002513 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 1 | B.1.194 | 0.04 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 145 | T145del1 | acA | ac- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp8 | 145 | T145K | aCa | aAa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp8 | 145 | T145S | aCA | aGT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp8 | 145 | T145R | aCa | aGa | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp8 | 145 | T145T | acA | acC | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.37 | 0.014706 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.379 | 0.017241 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp8 | 145 | T145A | Aca | Gca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp8 | 145 | T145M | aCA | aTG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp8 | 145 | T145L | ACA | CTT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp8 | 145 | T145P | Aca | Cca | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | C.29 | 0.0625 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp8 | 145 | T145R | aCa | aGa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp8 | 145 | T145I | aCa | aTa | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp8 | 145 | T145T | acA | acT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp8 | 145 | T145del | ACA | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp8 | 145 | T145T | acA | acG | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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