CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 131

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp8	131	V131V	V4073V	syn	gtC	gtT	6850	6816	0.995036	12482-12484
ORF1ab/nsp8	131	V131V	V4073V	syn	gtC	gtA	6850	23	0.00335766	12482-12484
ORF1ab/nsp8	131	V131V	V4073V	syn	gtC	gtG	6850	11	0.00160584	12482-12484
ORF1ab/nsp8	131	V131I	V4073I	nonsyn	Gtc	Atc	259	258	0.996139	12482-12484
ORF1ab/nsp8	131	V131I	V4073I	nonsyn	GtC	AtA	259	1	0.003861	12482-12484
ORF1ab/nsp8	131	V131del	V4073del	del	GTC	---	30	30	1	12482-12484
ORF1ab/nsp8	131	V131F	V4073F	nonsyn	Gtc	Ttc	12	12	1	12482-12484
ORF1ab/nsp8	131	V131del1	V4073del1	del	gtC	gt-	6	6	1	12482-12484
ORF1ab/nsp8	131	V131A	V4073A	nonsyn	gTc	gCc	5	5	1	12482-12484
ORF1ab/nsp8	131	V131L	V4073L	nonsyn	Gtc	Ctc	2	2	1	12482-12484
ORF1ab/nsp8	131	V131E	V4073E	nonsyn	gTC	gAG	2	1	0.5	12482-12484
ORF1ab/nsp8	131	V131E	V4073E	nonsyn	gTC	gAA	2	1	0.5	12482-12484
ORF1ab/nsp8	131	V131R	V4073R	nonsyn	GTC	AGA	1	1	1	12482-12484
ORF1ab/nsp8	131	V131G	V4073G	nonsyn	gTC	gGA	1	1	1	12482-12484
ORF1ab/nsp8	131	V131del2	V4073del2	del	gTC	g--	1	1	1	12482-12484
ORF1ab/nsp8	131	V131D	V4073D	nonsyn	gTc	gAc	1	1	1	12482-12484

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp8	131	V131V	gtC	gtT	6816	6850	All	0.001304
ORF1ab/nsp8	131	V131V	gtC	gtA	23	6850	All	0.000004
ORF1ab/nsp8	131	V131V	gtC	gtG	11	6850	All	0.000002
ORF1ab/nsp8	131	V131V	gtC	gtT	1575	1582	AY.4	0.002451
ORF1ab/nsp8	131	V131V	gtC	gtA	5	1582	AY.4	0.000008
ORF1ab/nsp8	131	V131V	gtC	gtG	2	1582	AY.4	0.000003
ORF1ab/nsp8	131	V131V	gtC	gtT	1012	1012	B.1.1.519	0.040187
ORF1ab/nsp8	131	V131V	gtC	gtT	753	758	B.1.1.7	0.000674
ORF1ab/nsp8	131	V131V	gtC	gtA	4	758	B.1.1.7	0.000004
ORF1ab/nsp8	131	V131V	gtC	gtG	1	758	B.1.1.7	0.000001
ORF1ab/nsp8	131	V131V	gtC	gtT	331	331	B.1.617.2	0.001246
ORF1ab/nsp8	131	V131I	Gtc	Atc	258	259	All	0.000049
ORF1ab/nsp8	131	V131I	GtC	AtA	1	259	All	0
ORF1ab/nsp8	131	V131V	gtC	gtT	194	194	B.1.2	0.001708
ORF1ab/nsp8	131	V131V	gtC	gtT	192	192	B.1.36.37	0.533333
ORF1ab/nsp8	131	V131V	gtC	gtT	186	186	AY.44	0.001132
ORF1ab/nsp8	131	V131V	gtC	gtT	152	152	B.1.427	0.007676
ORF1ab/nsp8	131	V131V	gtC	gtT	141	141	B.1.544	0.849398
ORF1ab/nsp8	131	V131V	gtC	gtT	140	140	B.1.177.82	0.066826
ORF1ab/nsp8	131	V131V	gtC	gtT	110	110	B.1.160	0.003431
ORF1ab/nsp8	131	V131V	gtC	gtT	101	102	B.1	0.000925
ORF1ab/nsp8	131	V131V	gtC	gtA	1	102	B.1	0.000009
ORF1ab/nsp8	131	V131V	gtC	gtT	95	96	AY.43	0.000421
ORF1ab/nsp8	131	V131V	gtC	gtA	1	96	AY.43	0.000004
ORF1ab/nsp8	131	V131V	gtC	gtT	86	87	AY.103	0.000534
ORF1ab/nsp8	131	V131V	gtC	gtG	1	87	AY.103	0.000006
ORF1ab/nsp8	131	V131V	gtC	gtT	87	87	AY.46.5	0.017262
ORF1ab/nsp8	131	V131V	gtC	gtT	87	87	B.1.177.69	0.12908
ORF1ab/nsp8	131	V131V	gtC	gtT	69	69	AY.25	0.000415
ORF1ab/nsp8	131	V131V	gtC	gtT	67	67	B.1.637	0.004896
ORF1ab/nsp8	131	V131V	gtC	gtT	65	65	B.1.429	0.001529
ORF1ab/nsp8	131	V131V	gtC	gtT	62	62	AY.20	0.00241
ORF1ab/nsp8	131	V131I	Gtc	Atc	59	60	B.1.1.7	0.000053
ORF1ab/nsp8	131	V131I	GtC	AtA	1	60	B.1.1.7	0.000001
ORF1ab/nsp8	131	V131V	gtC	gtT	56	56	B.1.623	0.030043
ORF1ab/nsp8	131	V131V	gtC	gtT	51	51	P.1	0.000803
ORF1ab/nsp8	131	V131V	gtC	gtT	48	49	AY.3	0.000477
ORF1ab/nsp8	131	V131V	gtC	gtG	1	49	AY.3	0.00001
ORF1ab/nsp8	131	V131V	gtC	gtT	49	49	B.1.604	0.844828
ORF1ab/nsp8	131	V131V	gtC	gtT	46	46	B.1.1	0.000834
ORF1ab/nsp8	131	V131V	gtC	gtT	42	42	AY.29.1	0.009261
ORF1ab/nsp8	131	V131V	gtC	gtT	41	41	B.1.177	0.00054
ORF1ab/nsp8	131	V131V	gtC	gtT	39	39	AY.47	0.001213
ORF1ab/nsp8	131	V131V	gtC	gtT	38	38	B.1.221	0.002699
ORF1ab/nsp8	131	V131V	gtC	gtT	37	37	AY.120	0.001376
ORF1ab/nsp8	131	V131I	Gtc	Atc	36	36	B.1.429	0.000847
ORF1ab/nsp8	131	V131I	Gtc	Atc	31	31	AY.103	0.000192
ORF1ab/nsp8	131	V131I	Gtc	Atc	31	31	B.1	0.000284
ORF1ab/nsp8	131	V131del	GTC	---	30	30	All	0.000006
ORF1ab/nsp8	131	V131V	gtC	gtT	28	30	AY.102	0.000742
ORF1ab/nsp8	131	V131V	gtC	gtG	2	30	AY.102	0.000053
ORF1ab/nsp8	131	V131V	gtC	gtT	30	30	AY.39	0.000741
ORF1ab/nsp8	131	V131V	gtC	gtT	30	30	B.1.1.33	0.012626
ORF1ab/nsp8	131	V131V	gtC	gtT	27	28	AY.119	0.000953
ORF1ab/nsp8	131	V131V	gtC	gtG	1	28	AY.119	0.000035
ORF1ab/nsp8	131	V131V	gtC	gtT	23	23	AY.5	0.000475
ORF1ab/nsp8	131	V131V	gtC	gtT	23	23	B.1.258	0.001531
ORF1ab/nsp8	131	V131V	gtC	gtT	22	22	B.1.526	0.000517
ORF1ab/nsp8	131	V131V	gtC	gtT	21	21	AY.59	0.011123
ORF1ab/nsp8	131	V131V	gtC	gtT	20	20	B.1.1.222	0.00408
ORF1ab/nsp8	131	V131V	gtC	gtT	20	20	C.16	0.021209
ORF1ab/nsp8	131	V131V	gtC	gtT	18	18	AY.26	0.00051
ORF1ab/nsp8	131	V131I	Gtc	Atc	16	16	B.1.2	0.000141
ORF1ab/nsp8	131	V131V	gtC	gtT	14	16	B.1.351	0.000416
ORF1ab/nsp8	131	V131V	gtC	gtA	2	16	B.1.351	0.000059
ORF1ab/nsp8	131	V131V	gtC	gtT	15	15	AY.100	0.00069
ORF1ab/nsp8	131	V131V	gtC	gtT	14	14	AY.9.1	0.001172
ORF1ab/nsp8	131	V131V	gtC	gtT	13	13	AY.37	0.004109
ORF1ab/nsp8	131	V131V	gtC	gtT	13	13	AY.42	0.000523
ORF1ab/nsp8	131	V131V	gtC	gtT	13	13	B.1.525	0.001471
ORF1ab/nsp8	131	V131F	Gtc	Ttc	12	12	All	0.000002
ORF1ab/nsp8	131	V131V	gtC	gtT	12	12	AY.33	0.000801
ORF1ab/nsp8	131	V131I	Gtc	Atc	12	12	R.1	0.00108
ORF1ab/nsp8	131	V131V	gtC	gtT	11	11	AY.3.1	0.000938
ORF1ab/nsp8	131	V131V	gtC	gtT	11	11	AY.67	0.005107
ORF1ab/nsp8	131	V131V	gtC	gtT	11	11	B.1.36	0.001605
ORF1ab/nsp8	131	V131V	gtC	gtT	11	11	B.1.596	0.000959
ORF1ab/nsp8	131	V131V	gtC	gtT	11	11	P.1.14	0.000526
ORF1ab/nsp8	131	V131I	Gtc	Atc	10	10	AY.67	0.004643
ORF1ab/nsp8	131	V131V	gtC	gtT	10	10	B.1.1.306	0.004384
ORF1ab/nsp8	131	V131del	GTC	---	10	10	B.1.1.7	0.000009
ORF1ab/nsp8	131	V131V	gtC	gtT	10	10	B.1.404	0.013021
ORF1ab/nsp8	131	V131V	gtC	gtT	9	9	AY.98.1	0.000436
ORF1ab/nsp8	131	V131V	gtC	gtT	9	9	B.1.1.134	0.102273
ORF1ab/nsp8	131	V131V	gtC	gtT	9	9	Q.1	0.001137
ORF1ab/nsp8	131	V131V	gtC	gtT	8	8	AY.29	0.000126
ORF1ab/nsp8	131	V131V	gtC	gtT	8	8	AY.55	0.007339
ORF1ab/nsp8	131	V131V	gtC	gtT	8	8	B.1.1.286	0.023188
ORF1ab/nsp8	131	V131V	gtC	gtT	8	8	B.1.428	0.008163
ORF1ab/nsp8	131	V131V	gtC	gtT	6	7	AY.46	0.000624
ORF1ab/nsp8	131	V131V	gtC	gtG	1	7	AY.46	0.000104
ORF1ab/nsp8	131	V131V	gtC	gtT	7	7	AY.46.3	0.006536
ORF1ab/nsp8	131	V131V	gtC	gtT	7	7	B.1.351.2	0.002118
ORF1ab/nsp8	131	V131V	gtC	gtT	7	7	P.2	0.001306
ORF1ab/nsp8	131	V131del1	gtC	gt-	6	6	All	0.000001
ORF1ab/nsp8	131	V131V	gtC	gtT	6	6	AY.27	0.000388
ORF1ab/nsp8	131	V131V	gtC	gtT	6	6	AY.45	0.00073
ORF1ab/nsp8	131	V131V	gtC	gtT	6	6	B.1.1.28	0.001867
ORF1ab/nsp8	131	V131I	Gtc	Atc	6	6	B.1.243	0.000418
ORF1ab/nsp8	131	V131V	gtC	gtT	6	6	B.1.36.17	0.002964
ORF1ab/nsp8	131	V131A	gTc	gCc	5	5	All	0.000001
ORF1ab/nsp8	131	V131V	gtC	gtT	5	5	AY.117	0.000423
ORF1ab/nsp8	131	V131V	gtC	gtT	4	5	AY.118	0.000251
ORF1ab/nsp8	131	V131V	gtC	gtG	1	5	AY.118	0.000063
ORF1ab/nsp8	131	V131I	Gtc	Atc	5	5	AY.4	0.000008
ORF1ab/nsp8	131	V131V	gtC	gtT	5	5	AY.4.2	0.000108
ORF1ab/nsp8	131	V131V	gtC	gtT	5	5	AY.46.2	0.003177
ORF1ab/nsp8	131	V131F	Gtc	Ttc	5	5	B.1	0.000046
ORF1ab/nsp8	131	V131V	gtC	gtT	5	5	B.1.1.214	0.000277
ORF1ab/nsp8	131	V131I	Gtc	Atc	5	5	B.1.160	0.000156
ORF1ab/nsp8	131	V131V	gtC	gtT	5	5	B.1.177.52	0.008787
ORF1ab/nsp8	131	V131I	Gtc	Atc	5	5	B.1.302	0.066667
ORF1ab/nsp8	131	V131V	gtC	gtT	5	5	B.1.409	0.003906
ORF1ab/nsp8	131	V131V	gtC	gtT	5	5	B.1.617.1	0.000645
ORF1ab/nsp8	131	V131V	gtC	gtT	5	5	C.36	0.004554
ORF1ab/nsp8	131	V131V	gtC	gtT	5	5	C.37	0.00058
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	A.28	0.010582
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	AY.16	0.001519
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	AY.46.1	0.004107
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	AY.48	0.00186
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	AY.6	0.000165
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	AY.61	0.000419
ORF1ab/nsp8	131	V131V	gtC	gtT	3	4	AY.9	0.000203
ORF1ab/nsp8	131	V131V	gtC	gtA	1	4	AY.9	0.000068
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	AY.91	0.002922
ORF1ab/nsp8	131	V131I	Gtc	Atc	4	4	B.1.1.1	0.001307
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	B.1.1.161	0.014134
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	B.1.1.216	0.003562
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	B.1.177.86	0.000734
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	B.1.240	0.000862
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	B.1.243	0.000278
ORF1ab/nsp8	131	V131V	gtC	gtT	4	4	B.1.582	0.001963
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	AY.113	0.000427
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	AY.23	0.000209
ORF1ab/nsp8	131	V131I	Gtc	Atc	3	3	AY.23	0.000209
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	AY.36	0.000445
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	AY.39.1	0.000119
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	AY.75	0.000168
ORF1ab/nsp8	131	V131V	gtC	gtT	2	3	AY.75.1	0.000361
ORF1ab/nsp8	131	V131V	gtC	gtA	1	3	AY.75.1	0.00018
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	AY.86	0.00249
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	AY.9.2	0.00011
ORF1ab/nsp8	131	V131I	Gtc	Atc	3	3	B.1.1	0.000054
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	B.1.1.10	0.003344
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	B.1.1.232	0.005445
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	B.1.1.322	0.026316
ORF1ab/nsp8	131	V131A	gTc	gCc	3	3	B.1.1.7	0.000003
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	B.1.177.7	0.000495
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	B.1.214.2	0.001799
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	B.1.258.11	0.001189
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	B.1.351.3	0.002629
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	B.1.369	0.000856
ORF1ab/nsp8	131	V131I	Gtc	Atc	3	3	B.1.526	0.000071
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	B.1.621	0.000266
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	C.14	0.012987
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	D.2	0.000225
ORF1ab/nsp8	131	V131I	Gtc	Atc	3	3	P.1	0.000047
ORF1ab/nsp8	131	V131V	gtC	gtT	3	3	Q.4	0.001364
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	A	0.000774
ORF1ab/nsp8	131	V131I	Gtc	Atc	2	2	A.2.5.2	0.003145
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	A.21	0.00554
ORF1ab/nsp8	131	V131L	Gtc	Ctc	2	2	All	0
ORF1ab/nsp8	131	V131E	gTC	gAG	1	2	All	0
ORF1ab/nsp8	131	V131E	gTC	gAA	1	2	All	0
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AU.2	0.004843
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.111	0.000366
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.114	0.000462
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.13	0.000322
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.14	0.000176
ORF1ab/nsp8	131	V131del	GTC	---	2	2	AY.25	0.000012
ORF1ab/nsp8	131	V131I	Gtc	Atc	2	2	AY.29	0.000032
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.30	0.000791
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.32	0.001065
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.34	0.000194
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.38	0.000999
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.4.3	0.001684
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.4.5	0.000215
ORF1ab/nsp8	131	V131del	GTC	---	2	2	AY.43	0.000009
ORF1ab/nsp8	131	V131I	Gtc	Atc	2	2	AY.44	0.000012
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.5.3	0.000675
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.7	0.000392
ORF1ab/nsp8	131	V131del	GTC	---	2	2	AY.75	0.000112
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.77	0.002255
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AY.98	0.000158
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	AZ.2	0.001642
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.1.1.277	0.001517
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.1.1.311	0.000716
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.1.1.317	0.000823
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.1.1.464	0.002946
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.1.1.521	0.010695
ORF1ab/nsp8	131	V131V	gtC	gtT	1	2	B.1.1.63	0.000386
ORF1ab/nsp8	131	V131V	gtC	gtA	1	2	B.1.1.63	0.000386
ORF1ab/nsp8	131	V131V	gtC	gtA	2	2	B.1.177.81	0.000379
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.1.206	0.001631
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.1.36.18	0.00084
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.1.36.29	0.001035
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.1.466.2	0.000782
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.1.517.1	0.010526
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.1.524	0.002813
ORF1ab/nsp8	131	V131I	Gtc	Atc	2	2	B.1.617.2	0.000008
ORF1ab/nsp8	131	V131del1	gtC	gt-	2	2	B.1.627	0.00404
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	B.6.6	0.001778
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	C.36.3	0.001134
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	P.1.12	0.000968
ORF1ab/nsp8	131	V131I	Gtc	Atc	2	2	P.2	0.000373
ORF1ab/nsp8	131	V131V	gtC	gtT	2	2	Q.3	0.00029
ORF1ab/nsp8	131	V131F	Gtc	Ttc	1	1	A.1	0.000282
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	A.30	0.142857
ORF1ab/nsp8	131	V131del	GTC	---	1	1	AD.2	0.000219
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AD.2	0.000219
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AE.8	0.000489
ORF1ab/nsp8	131	V131G	gTC	gGA	1	1	All	0
ORF1ab/nsp8	131	V131D	gTc	gAc	1	1	All	0
ORF1ab/nsp8	131	V131del2	gTC	g--	1	1	All	0
ORF1ab/nsp8	131	V131R	GTC	AGA	1	1	All	0
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.1	0.000396
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	AY.102	0.000027
ORF1ab/nsp8	131	V131F	Gtc	Ttc	1	1	AY.103	0.000006
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.109	0.00074
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.116.1	0.000311
ORF1ab/nsp8	131	V131del	GTC	---	1	1	AY.120	0.000037
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	AY.120	0.000037
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.121	0.000135
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.16.1	0.00047
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	AY.26	0.000028
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	AY.29.1	0.000221
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	AY.3	0.00001
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.34.1	0.00051
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.35	0.000233
ORF1ab/nsp8	131	V131L	Gtc	Ctc	1	1	AY.4	0.000002
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.4.1	0.000737
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	AY.4.2	0.000022
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.4.2.1	0.000149
ORF1ab/nsp8	131	V131A	gTc	gCc	1	1	AY.43	0.000004
ORF1ab/nsp8	131	V131A	gTc	gCc	1	1	AY.44	0.000006
ORF1ab/nsp8	131	V131del	GTC	---	1	1	AY.46	0.000104
ORF1ab/nsp8	131	V131del1	gtC	gt-	1	1	AY.46.2	0.000635
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.46.6	0.000072
ORF1ab/nsp8	131	V131del	GTC	---	1	1	AY.5	0.000021
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.56	0.001605
ORF1ab/nsp8	131	V131F	Gtc	Ttc	1	1	AY.62	0.000436
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.7.1	0.000113
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.7.2	0.000559
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.71	0.000475
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.74	0.000116
ORF1ab/nsp8	131	V131del	GTC	---	1	1	AY.8	0.000606
ORF1ab/nsp8	131	V131R	GTC	AGA	1	1	AY.85	0.000427
ORF1ab/nsp8	131	V131G	gTC	gGA	1	1	AY.85	0.000427
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.88	0.000884
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.89	0.004902
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	AY.9	0.000068
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	AY.9.1	0.000084
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.94	0.000443
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.95	0.000761
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.96	0.002075
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AY.99.2	0.000092
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	AZ.3	0.00152
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B	0.000128
ORF1ab/nsp8	131	V131L	Gtc	Ctc	1	1	B.1	0.000009
ORF1ab/nsp8	131	V131del	GTC	---	1	1	B.1	0.000009
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.121	0.002427
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.133	0.008475
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.135	0.004695
ORF1ab/nsp8	131	V131del	GTC	---	1	1	B.1.1.139	0.022727
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.141	0.002012
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.170	0.001247
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.25	0.000569
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.258	0.003257
ORF1ab/nsp8	131	V131del	GTC	---	1	1	B.1.1.28	0.000311
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.289	0.002083
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.294	0.001266
ORF1ab/nsp8	131	V131D	gTc	gAc	1	1	B.1.1.300	0.010753
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.318	0.000302
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.326	0.001761
ORF1ab/nsp8	131	V131F	Gtc	Ttc	1	1	B.1.1.326	0.001761
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.333	0.001076
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.348	0.000796
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.387	0.058824
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.398	0.003226
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.413	0.006897
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.426	0.035714
ORF1ab/nsp8	131	V131del	GTC	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.47	0.005348
ORF1ab/nsp8	131	V131E	gTC	gAG	1	1	B.1.1.519	0.00004
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.54	0.003021
ORF1ab/nsp8	131	V131F	Gtc	Ttc	1	1	B.1.1.7	0.000001
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.70	0.000341
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.1.83	0.00271
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.110.3	0.000718
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.147	0.000756
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.149	0.003425
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.167	0.007812
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.169	0.014925
ORF1ab/nsp8	131	V131del2	gTC	g--	1	1	B.1.177	0.000013
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.177.10	0.000878
ORF1ab/nsp8	131	V131V	gtC	gtG	1	1	B.1.177.12	0.000152
ORF1ab/nsp8	131	V131V	gtC	gtA	1	1	B.1.177.15	0.000631
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.177.44	0.000519
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.177.77	0.000726
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.177.8	0.000752
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.177.87	0.000728
ORF1ab/nsp8	131	V131del	GTC	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp8	131	V131F	Gtc	Ttc	1	1	B.1.2	0.000009
ORF1ab/nsp8	131	V131del1	gtC	gt-	1	1	B.1.2	0.000009
ORF1ab/nsp8	131	V131del	GTC	---	1	1	B.1.2	0.000009
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.214	0.003663
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.222	0.001692
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.239	0.001221
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	B.1.247	0.014925
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	B.1.258	0.000067
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.258.17	0.000104
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	B.1.258.17	0.000104
ORF1ab/nsp8	131	V131V	gtC	gtA	1	1	B.1.301	0.005917
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.311	0.000275
ORF1ab/nsp8	131	V131V	gtC	gtA	1	1	B.1.36.31	0.001751
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.361	0.001289
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.391	0.001127
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.399	0.001934
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.400	0.000429
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.452	0.013699
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	B.1.466.2	0.000391
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.499	0.00105
ORF1ab/nsp8	131	V131V	gtC	gtA	1	1	B.1.509	0.000866
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.538	0.008065
ORF1ab/nsp8	131	V131del1	gtC	gt-	1	1	B.1.540	0.009709
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.554	0.004405
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	B.1.561	0.000397
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.573	0.006098
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.575.1	0.002439
ORF1ab/nsp8	131	V131E	gTC	gAA	1	1	B.1.577	0.000687
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.577	0.000687
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.580	0.004065
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.588	0.00091
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.590	0.004545
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.595	0.000261
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	B.1.596	0.000087
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.609	0.000479
ORF1ab/nsp8	131	V131del	GTC	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.625	0.002353
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.1.94	0.027027
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.31	0.003731
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.4.1	0.018868
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.45	0.003831
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	B.6	0.00091
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	C.1	0.002392
ORF1ab/nsp8	131	V131del	GTC	---	1	1	C.36	0.000911
ORF1ab/nsp8	131	V131F	Gtc	Ttc	1	1	D.2	0.000075
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	N.1	0.016949
ORF1ab/nsp8	131	V131del	GTC	---	1	1	N.4	0.004255
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	P.1.10	0.000269
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	P.1.15	0.000232
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	P.1.16	0.000374
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	P.1.4	0.000977
ORF1ab/nsp8	131	V131V	gtC	gtA	1	1	P.1.9	0.004808
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	P.7	0.004367
ORF1ab/nsp8	131	V131I	Gtc	Atc	1	1	Q.6	0.006623
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	Q.8	0.000165
ORF1ab/nsp8	131	V131del1	gtC	gt-	1	1	Q.8	0.000165
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	R.1	0.00009
ORF1ab/nsp8	131	V131V	gtC	gtT	1	1	W.2	0.004831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.