CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 13

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp813A13AA3955AsyngcAgcG6755590.82814812128-12130
ORF1ab/nsp813A13AA3955AsyngcAgcT675870.12888912128-12130
ORF1ab/nsp813A13AA3955AsyngcAgcC675290.04296312128-12130
ORF1ab/nsp813A13SA3955SnonsynGcaTca2282250.98684212128-12130
ORF1ab/nsp813A13SA3955SnonsynGcATcC22830.013157912128-12130
ORF1ab/nsp813A13TA3955TnonsynGcaAca158158112128-12130
ORF1ab/nsp813A13VA3955VnonsyngCagTa1461430.97945212128-12130
ORF1ab/nsp813A13VA3955VnonsyngCAgTC14630.020547912128-12130
ORF1ab/nsp813A13EA3955EnonsyngCagAa123123112128-12130
ORF1ab/nsp813A13PA3955PnonsynGcaCca44112128-12130
ORF1ab/nsp813A13delA3955deldelGCA---44112128-12130
ORF1ab/nsp813A13LA3955LnonsynGCaTTa33112128-12130
ORF1ab/nsp813A13GA3955GnonsyngCagGa320.66666712128-12130
ORF1ab/nsp813A13GA3955GnonsyngCAgGC310.33333312128-12130
ORF1ab/nsp813A13FA3955FnonsynGCATTC22112128-12130
ORF1ab/nsp813A13del1A3955del1delgCag-a22112128-12130
ORF1ab/nsp813A13CA3955CnonsynGCATGC11112128-12130
ORF1ab/nsp813A13XA3955XnonsynGCaTGa11112128-12130

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp813A13AgcAgcG559675All0.000107
ORF1ab/nsp813A13AgcAgcT87675All0.000017
ORF1ab/nsp813A13AgcAgcC29675All0.000006
ORF1ab/nsp813A13SGcaTca225228All0.000043
ORF1ab/nsp813A13SGcATcC3228All0.000001
ORF1ab/nsp813A13SGcaTca185185B.1.1.70.000166
ORF1ab/nsp813A13TGcaAca158158All0.00003
ORF1ab/nsp813A13AgcAgcG155155AY.330.010351
ORF1ab/nsp813A13VgCagTa143146All0.000027
ORF1ab/nsp813A13VgCAgTC3146All0.000001
ORF1ab/nsp813A13EgCagAa123123All0.000024
ORF1ab/nsp813A13AgcAgcG107114B.1.1.70.000096
ORF1ab/nsp813A13AgcAgcT6114B.1.1.70.000005
ORF1ab/nsp813A13AgcAgcC1114B.1.1.70.000001
ORF1ab/nsp813A13AgcAgcG5970AY.440.000359
ORF1ab/nsp813A13AgcAgcT1170AY.440.000067
ORF1ab/nsp813A13VgCagTa5151AY.40.000079
ORF1ab/nsp813A13AgcAgcG4646B.1.4600.821429
ORF1ab/nsp813A13VgCagTa3535AY.440.000213
ORF1ab/nsp813A13AgcAgcG3333B.1.20.000291
ORF1ab/nsp813A13TGcaAca3131B.1.617.20.000117
ORF1ab/nsp813A13AgcAgcG1530B.1.617.20.000056
ORF1ab/nsp813A13AgcAgcT1530B.1.617.20.000056
ORF1ab/nsp813A13AgcAgcG2329AY.40.000036
ORF1ab/nsp813A13AgcAgcT329AY.40.000005
ORF1ab/nsp813A13AgcAgcC329AY.40.000005
ORF1ab/nsp813A13TGcaAca2828B.1.1.70.000025
ORF1ab/nsp813A13EgCagAa2727AY.390.000667
ORF1ab/nsp813A13EgCagAa2626B.1.617.20.000098
ORF1ab/nsp813A13AgcAgcC1620B.1.360.002334
ORF1ab/nsp813A13AgcAgcG420B.1.360.000584
ORF1ab/nsp813A13TGcaAca2020B.1.6370.001461
ORF1ab/nsp813A13AgcAgcG1719AY.30.000169
ORF1ab/nsp813A13AgcAgcC219AY.30.00002
ORF1ab/nsp813A13TGcaAca1818B.1.20.000158
ORF1ab/nsp813A13EgCagAa1616AY.1020.000424
ORF1ab/nsp813A13SGcaTca1414B.1.20.000123
ORF1ab/nsp813A13AgcAgcT1013AY.1020.000265
ORF1ab/nsp813A13AgcAgcG313AY.1020.00008
ORF1ab/nsp813A13EgCagAa1313AY.30.000129
ORF1ab/nsp813A13EgCagAa1212AY.1110.002198
ORF1ab/nsp813A13TGcaAca1212B.1.2430.000835
ORF1ab/nsp813A13TGcaAca1010AY.1000.00046
ORF1ab/nsp813A13AgcAgcT1010AY.1190.000353
ORF1ab/nsp813A13VgCagTa1010B.1.10.000181
ORF1ab/nsp813A13AgcAgcG99AY.250.000054
ORF1ab/nsp813A13TGcaAca99AY.40.000014
ORF1ab/nsp813A13AgcAgcG79B.10.000064
ORF1ab/nsp813A13AgcAgcT19B.10.000009
ORF1ab/nsp813A13AgcAgcC19B.10.000009
ORF1ab/nsp813A13AgcAgcT58AY.430.000022
ORF1ab/nsp813A13AgcAgcG38AY.430.000013
ORF1ab/nsp813A13SGcaTca88B.1.617.20.00003
ORF1ab/nsp813A13EgCagAa77AY.99.10.01087
ORF1ab/nsp813A13AgcAgcT66AY.1110.001099
ORF1ab/nsp813A13AgcAgcG66AY.420.000241
ORF1ab/nsp813A13VgCagTa350.166667
ORF1ab/nsp813A13SGcaTca350.166667
ORF1ab/nsp813A13VgCAgTC250.111111
ORF1ab/nsp813A13SGcATcC250.111111
ORF1ab/nsp813A13EgCagAa55AY.1200.000186
ORF1ab/nsp813A13AgcAgcG55AY.200.000194
ORF1ab/nsp813A13VgCagTa55AY.430.000022
ORF1ab/nsp813A13PGcaCca44All0.000001
ORF1ab/nsp813A13delGCA---44All0.000001
ORF1ab/nsp813A13AgcAgcG34AY.1030.000019
ORF1ab/nsp813A13AgcAgcT14AY.1030.000006
ORF1ab/nsp813A13VgCagTa44AY.30.00004
ORF1ab/nsp813A13EgCagAa44AY.440.000024
ORF1ab/nsp813A13VgCagTa44AY.60.000165
ORF1ab/nsp813A13AgcAgcG44AY.98.10.000194
ORF1ab/nsp813A13AgcAgcG34B.1.5260.000071
ORF1ab/nsp813A13AgcAgcT14B.1.5260.000024
ORF1ab/nsp813A13AgcAgcG44B.1.5750.001214
ORF1ab/nsp813A13VgCagTa44B.1.617.20.000015
ORF1ab/nsp813A13AgcAgcC330.166667
ORF1ab/nsp813A13LGCaTTa33All0.000001
ORF1ab/nsp813A13GgCagGa23All0
ORF1ab/nsp813A13GgCAgGC13All0
ORF1ab/nsp813A13SGcaTca33AY.1020.00008
ORF1ab/nsp813A13EgCagAa33AY.430.000013
ORF1ab/nsp813A13AgcAgcT33AY.460.000312
ORF1ab/nsp813A13AgcAgcG33AY.740.000347
ORF1ab/nsp813A13EgCagAa33AY.770.003382
ORF1ab/nsp813A13TGcaAca33B.10.000027
ORF1ab/nsp813A13AgcAgcG33B.1.1.2220.000612
ORF1ab/nsp813A13AgcAgcG33B.1.1600.000094
ORF1ab/nsp813A13AgcAgcG33B.1.466.20.001174
ORF1ab/nsp813A13AgcAgcG33B.40.006623
ORF1ab/nsp813A13AgcAgcG33P.1.100.000808
ORF1ab/nsp813A13VgCagTa33P.20.00056
ORF1ab/nsp813A13LGCaTTa220.111111
ORF1ab/nsp813A13GgCAgGC120.055556
ORF1ab/nsp813A13GgCagGa120.055556
ORF1ab/nsp813A13del1gCag-a22All0
ORF1ab/nsp813A13FGCATTC22All0
ORF1ab/nsp813A13AgcAgcG22AY.1000.000092
ORF1ab/nsp813A13EgCagAa22AY.1030.000012
ORF1ab/nsp813A13TGcaAca22AY.1180.000125
ORF1ab/nsp813A13AgcAgcT22AY.230.000139
ORF1ab/nsp813A13VgCagTa22AY.250.000012
ORF1ab/nsp813A13VgCagTa22AY.260.000057
ORF1ab/nsp813A13TGcaAca22AY.430.000009
ORF1ab/nsp813A13TGcaAca22AY.440.000012
ORF1ab/nsp813A13AgcAgcG22B.1.10.000036
ORF1ab/nsp813A13AgcAgcT22B.1.1.3180.000604
ORF1ab/nsp813A13PGcaCca22B.1.1.70.000002
ORF1ab/nsp813A13AgcAgcG22B.1.177.60.001953
ORF1ab/nsp813A13AgcAgcC22B.1.2210.000142
ORF1ab/nsp813A13VgCAgTC12B.1.2210.000071
ORF1ab/nsp813A13SGcaTca12B.1.2210.000071
ORF1ab/nsp813A13SGcATcC12B.1.2210.000071
ORF1ab/nsp813A13VgCagTa12B.1.2210.000071
ORF1ab/nsp813A13TGcaAca22B.1.2340.000264
ORF1ab/nsp813A13AgcAgcG22B.1.3110.000549
ORF1ab/nsp813A13AgcAgcT22B.1.351.30.001753
ORF1ab/nsp813A13del1gCag-a22B.1.6270.00404
ORF1ab/nsp813A13TGcaAca22P.10.000032
ORF1ab/nsp813A13AgcAgcT22P.1.170.000324
ORF1ab/nsp813A13TGcaAca22Q.40.00091
ORF1ab/nsp813A13CGCATGC110.055556
ORF1ab/nsp813A13XGCaTGa110.055556
ORF1ab/nsp813A13FGCATTC110.055556
ORF1ab/nsp813A13AgcAgcG11AD.20.000219
ORF1ab/nsp813A13SGcaTca11AE.80.000489
ORF1ab/nsp813A13XGCaTGa11All0
ORF1ab/nsp813A13CGCATGC11All0
ORF1ab/nsp813A13VgCagTa11AY.1020.000027
ORF1ab/nsp813A13TGcaAca11AY.1030.000006
ORF1ab/nsp813A13AgcAgcG11AY.1070.000466
ORF1ab/nsp813A13TGcaAca11AY.1110.000183
ORF1ab/nsp813A13AgcAgcG11AY.1130.000142
ORF1ab/nsp813A13VgCagTa11AY.1170.000085
ORF1ab/nsp813A13AgcAgcG11AY.1180.000063
ORF1ab/nsp813A13SGcaTca11AY.1180.000063
ORF1ab/nsp813A13VgCagTa11AY.1180.000063
ORF1ab/nsp813A13VgCagTa11AY.200.000039
ORF1ab/nsp813A13SGcaTca11AY.200.000039
ORF1ab/nsp813A13AgcAgcG11AY.290.000016
ORF1ab/nsp813A13TGcaAca11AY.290.000016
ORF1ab/nsp813A13TGcaAca11AY.30.00001
ORF1ab/nsp813A13TGcaAca11AY.300.000396
ORF1ab/nsp813A13VgCagTa11AY.330.000067
ORF1ab/nsp813A13AgcAgcG11AY.390.000025
ORF1ab/nsp813A13SGcaTca11AY.40.000002
ORF1ab/nsp813A13PGcaCca11AY.40.000002
ORF1ab/nsp813A13VgCagTa11AY.4.50.000107
ORF1ab/nsp813A13VgCagTa11AY.410.000294
ORF1ab/nsp813A13EgCagAa11AY.450.000122
ORF1ab/nsp813A13AgcAgcG11AY.46.20.000635
ORF1ab/nsp813A13EgCagAa11AY.46.20.000635
ORF1ab/nsp813A13VgCagTa11AY.470.000031
ORF1ab/nsp813A13AgcAgcG11AY.470.000031
ORF1ab/nsp813A13VgCagTa11AY.50.000021
ORF1ab/nsp813A13EgCagAa11AY.50.000021
ORF1ab/nsp813A13TGcaAca11AY.50.000021
ORF1ab/nsp813A13AgcAgcG11AY.540.000095
ORF1ab/nsp813A13TGcaAca11AY.550.000917
ORF1ab/nsp813A13AgcAgcG11AY.610.000105
ORF1ab/nsp813A13TGcaAca11AY.610.000105
ORF1ab/nsp813A13GgCagGa11AY.620.000436
ORF1ab/nsp813A13AgcAgcG11AY.690.000187
ORF1ab/nsp813A13VgCagTa11AY.7.10.000113
ORF1ab/nsp813A13SGcaTca11AY.750.000056
ORF1ab/nsp813A13AgcAgcT11AY.790.001211
ORF1ab/nsp813A13TGcaAca11AY.880.000884
ORF1ab/nsp813A13AgcAgcT11AY.90.000068
ORF1ab/nsp813A13AgcAgcT11AY.99.20.000092
ORF1ab/nsp813A13TGcaAca11B0.000128
ORF1ab/nsp813A13delGCA---11B0.000128
ORF1ab/nsp813A13delGCA---11B.10.000009
ORF1ab/nsp813A13SGcaTca11B.10.000009
ORF1ab/nsp813A13VgCagTa11B.10.000009
ORF1ab/nsp813A13EgCagAa11B.1.10.000018
ORF1ab/nsp813A13SGcaTca11B.1.10.000018
ORF1ab/nsp813A13SGcaTca11B.1.1.100.001115
ORF1ab/nsp813A13AgcAgcT11B.1.1.2160.00089
ORF1ab/nsp813A13SGcaTca11B.1.1.2160.00089
ORF1ab/nsp813A13VgCagTa11B.1.1.250.000569
ORF1ab/nsp813A13TGcaAca11B.1.1.2550.00303
ORF1ab/nsp813A13AgcAgcG11B.1.1.2770.000759
ORF1ab/nsp813A13AgcAgcG11B.1.1.280.000311
ORF1ab/nsp813A13AgcAgcG11B.1.1.3280.016949
ORF1ab/nsp813A13EgCagAa11B.1.1.330.000421
ORF1ab/nsp813A13VgCagTa11B.1.1.410.006329
ORF1ab/nsp813A13SGcaTca11B.1.1.5190.00004
ORF1ab/nsp813A13delGCA---11B.1.1.70.000001
ORF1ab/nsp813A13VgCagTa11B.1.1.70.000001
ORF1ab/nsp813A13AgcAgcT11B.1.1260.001276
ORF1ab/nsp813A13AgcAgcG11B.1.1770.000013
ORF1ab/nsp813A13AgcAgcG11B.1.177.160.000664
ORF1ab/nsp813A13AgcAgcG11B.1.177.810.000189
ORF1ab/nsp813A13VgCagTa11B.1.20.000009
ORF1ab/nsp813A13FGCATTC11B.1.2210.000071
ORF1ab/nsp813A13LGCaTTa11B.1.2210.000071
ORF1ab/nsp813A13VgCagTa11B.1.2580.000067
ORF1ab/nsp813A13AgcAgcG11B.1.2580.000067
ORF1ab/nsp813A13TGcaAca11B.1.3510.00003
ORF1ab/nsp813A13TGcaAca11B.1.36.70.004
ORF1ab/nsp813A13AgcAgcG11B.1.36.80.001
ORF1ab/nsp813A13SGcaTca11B.1.4130.004255
ORF1ab/nsp813A13AgcAgcG11B.1.4270.00005
ORF1ab/nsp813A13VgCagTa11B.1.4290.000024
ORF1ab/nsp813A13AgcAgcC11B.1.5250.000113
ORF1ab/nsp813A13AgcAgcG11B.1.5510.00129
ORF1ab/nsp813A13VgCagTa11B.1.5950.000261
ORF1ab/nsp813A13AgcAgcG11B.1.5950.000261
ORF1ab/nsp813A13AgcAgcG11B.1.5960.000087
ORF1ab/nsp813A13TGcaAca11B.1.5960.000087
ORF1ab/nsp813A13PGcaCca11B.1.617.20.000004
ORF1ab/nsp813A13AgcAgcG11B.6.80.008264
ORF1ab/nsp813A13AgcAgcT11C.360.000911
ORF1ab/nsp813A13AgcAgcG11D.20.000075
ORF1ab/nsp813A13delGCA---11N.40.004255
ORF1ab/nsp813A13AgcAgcG11P.10.000016
ORF1ab/nsp813A13AgcAgcT11P.1.150.000232
ORF1ab/nsp813A13VgCagTa11Q.30.000145
ORF1ab/nsp813A13TGcaAca11Q.80.000165
ORF1ab/nsp813A13AgcAgcG11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.