CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 128 & Codon = Tta

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp8128L128LL4070LsynCtaTta14198140150.98711112473-12475

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp8128L128LCtaTta1401514198All0.002681
ORF1ab/nsp8128L128LCtaTta25582573B.1.1.70.00229
ORF1ab/nsp8128L128LCtaTta19942002B.1.20.017558
ORF1ab/nsp8128L128LCtaTta15131513B.1.619.10.970494
ORF1ab/nsp8128L128LCtaTta11411142B.1.617.20.004296
ORF1ab/nsp8128L128LCtaTta10751075B.1.6190.936411
ORF1ab/nsp8128L128LCtaTta778778AY.1030.004831
ORF1ab/nsp8128L128LCtaTta738740AY.40.001149
ORF1ab/nsp8128L128LCtaTta434434B.1.6210.038417
ORF1ab/nsp8128L128LCtaTta142281AY.430.000629
ORF1ab/nsp8128L128LCtaTta169175B.10.001548
ORF1ab/nsp8128L128LCtaTta173173B.1.1770.002278
ORF1ab/nsp8128L128LCtaTta162162AY.30.001611
ORF1ab/nsp8128L128LCtaTta162162AY.440.000986
ORF1ab/nsp8128L128LCtaTta153153B.1.3110.04201
ORF1ab/nsp8128L128LCtaTta147148B.1.10.002667
ORF1ab/nsp8128L128LCtaTta135135P.10.002127
ORF1ab/nsp8128L128LCtaTta115115AY.250.000692
ORF1ab/nsp8128L128LCtaTta108108B.1.1.3480.085987
ORF1ab/nsp8128L128LCtaTta108108B.1.3360.263415
ORF1ab/nsp8128L128LCtaTta9090AY.50.001858
ORF1ab/nsp8128L128LCtaTta7979AY.1020.002095
ORF1ab/nsp8128L128LCtaTta7979B.1.4270.003989
ORF1ab/nsp8128L128LCtaTta7777P.1.160.028807
ORF1ab/nsp8128L128LCtaTta6565B.1.1.5190.002581
ORF1ab/nsp8128L128LCtaTta6464AY.46.40.010528
ORF1ab/nsp8128L128LCtaTta6161B.1.2210.004333
ORF1ab/nsp8128L128LCtaTta5454B.1.1.1570.049315
ORF1ab/nsp8128L128LCtaTta5252AY.670.024141
ORF1ab/nsp8128L128LCtaTta5252B.1.1.280.016184
ORF1ab/nsp8128L128LCtaTta4747AY.5.40.013005
ORF1ab/nsp8128L128LCtaTta4242B.1.258.140.041176
ORF1ab/nsp8128L128LCtaTta4242B.1.36.340.893617
ORF1ab/nsp8128L128LCtaTta3939AY.260.001104
ORF1ab/nsp8128L128LCtaTta3535AY.390.000865
ORF1ab/nsp8128L128LCtaTta3535B.1.1600.001092
ORF1ab/nsp8128L128LCtaTta3434B.1.5260.000799
ORF1ab/nsp8128L128LCtaTta3131AY.1180.001942
ORF1ab/nsp8128L128LCtaTta3030AY.4.20.000651
ORF1ab/nsp8128L128LCtaTta3030B.1.110.30.021552
ORF1ab/nsp8128L128LCtaTta2929B.1.4290.000682
ORF1ab/nsp8128L128LCtaTta2728AY.290.000426
ORF1ab/nsp8128L128LCtaTta2424AY.470.000747
ORF1ab/nsp8128L128LCtaTta2323AY.98.10.001114
ORF1ab/nsp8128L128LCtaTta2323B.1.3510.000684
ORF1ab/nsp8128L128LCtaTta2222AY.1130.003133
ORF1ab/nsp8128L128LCtaTta2222AY.200.000855
ORF1ab/nsp8128L128LCtaTta2121B.1.2340.002771
ORF1ab/nsp8128L128LCtaTta2121B.1.6370.001535
ORF1ab/nsp8128L128LCtaTta1919AY.39.10.000753
ORF1ab/nsp8128L128LCtaTta1919B.1.3240.030498
ORF1ab/nsp8128L128LCtaTta1818B.1.36.350.046875
ORF1ab/nsp8128L128LCtaTta1717AY.1190.0006
ORF1ab/nsp8128L128LCtaTta1717B.1.5210.084577
ORF1ab/nsp8128L128LCtaTta1616B.1.2580.001065
ORF1ab/nsp8128L128LCtaTta1616B.1.258.170.001664
ORF1ab/nsp8128L128LCtaTta1414AY.380.00699
ORF1ab/nsp8128L128LCtaTta1414B.1.1.1760.006151
ORF1ab/nsp8128L128LCtaTta1414B.1.1.3010.016509
ORF1ab/nsp8128L128LCtaTta1414B.1.466.20.005477
ORF1ab/nsp8128L128LCtaTta1313AY.5.30.004386
ORF1ab/nsp8128L128LCtaTta1113AY.9.20.000404
ORF1ab/nsp8128L128LCtaTta1212B.1.1.370.002314
ORF1ab/nsp8128L128LCtaTta1111AY.450.001339
ORF1ab/nsp8128L128LCtaTta1111AY.460.001145
ORF1ab/nsp8128L128LCtaTta1111AY.60.000452
ORF1ab/nsp8128L128LCtaTta1111AY.9.10.000921
ORF1ab/nsp8128L128LCtaTta1111B.1.1.10.003594
ORF1ab/nsp8128L128LCtaTta1111B.1.2430.000765
ORF1ab/nsp8128L128LCtaTta1111B.1.5960.000959
ORF1ab/nsp8128L128LCtaTta1111D.20.000825
ORF1ab/nsp8128L128LCtaTta1010AY.270.000647
ORF1ab/nsp8128L128LCtaTta1010AY.590.005297
ORF1ab/nsp8128L128LCtaTta1010AY.750.00056
ORF1ab/nsp8128L128LCtaTta1010B0.001278
ORF1ab/nsp8128L128LCtaTta1010B.1.1.1890.015129
ORF1ab/nsp8128L128LCtaTta1010B.1.1.250.005685
ORF1ab/nsp8128L128LCtaTta1010B.1.177.860.001835
ORF1ab/nsp8128L128LCtaTta1010B.1.5250.001132
ORF1ab/nsp8128L128LCtaTta1010B.1.5750.003034
ORF1ab/nsp8128L128LCtaTta99AY.360.001334
ORF1ab/nsp8128L128LCtaTta99AY.400.008679
ORF1ab/nsp8128L128LCtaTta99B.1.1.3070.022785
ORF1ab/nsp8128L128LCtaTta99B.1.1.3180.002716
ORF1ab/nsp8128L128LCtaTta99Q.80.001484
ORF1ab/nsp8128L128LCtaTta88AY.46.60.000578
ORF1ab/nsp8128L128LCtaTta88B.1.6280.002819
ORF1ab/nsp8128L128LCtaTta88Q.30.00116
ORF1ab/nsp8128L128LCtaTta77AY.230.000488
ORF1ab/nsp8128L128LCtaTta77AY.3.10.000597
ORF1ab/nsp8128L128LCtaTta77AY.330.000467
ORF1ab/nsp8128L128LCtaTta77AY.480.003256
ORF1ab/nsp8128L128LCtaTta77B.1.1.3170.002882
ORF1ab/nsp8128L128LCtaTta77B.1.360.001021
ORF1ab/nsp8128L128LCtaTta77B.1.4090.005469
ORF1ab/nsp8128L128LCtaTta77C.370.000812
ORF1ab/nsp8128L128LCtaTta77P.1.120.003388
ORF1ab/nsp8128L128LCtaTta66AY.1000.000276
ORF1ab/nsp8128L128LCtaTta66AY.130.000966
ORF1ab/nsp8128L128LCtaTta66AY.420.000241
ORF1ab/nsp8128L128LCtaTta66AY.530.001725
ORF1ab/nsp8128L128LCtaTta66AY.840.002625
ORF1ab/nsp8128L128LCtaTta66AY.940.002656
ORF1ab/nsp8128L128LCtaTta66B.1.1.330.002525
ORF1ab/nsp8128L128LCtaTta66B.1.1.4160.00543
ORF1ab/nsp8128L128LCtaTta66B.1.438.10.000644
ORF1ab/nsp8128L128LCtaTta66B.1.617.10.000774
ORF1ab/nsp8128L128LCtaTta66C.360.005464
ORF1ab/nsp8128L128LCtaTta55AY.1160.001434
ORF1ab/nsp8128L128LCtaTta55AY.120.10.001605
ORF1ab/nsp8128L128LCtaTta55AY.140.00044
ORF1ab/nsp8128L128LCtaTta55AY.610.000524
ORF1ab/nsp8128L128LCtaTta55AY.90.000338
ORF1ab/nsp8128L128LCtaTta55B.1.1.2140.000277
ORF1ab/nsp8128L128LCtaTta55B.1.177.150.003155
ORF1ab/nsp8128L128LCtaTta55B.1.177.40.001055
ORF1ab/nsp8128L128LCtaTta55B.1.36.290.002587
ORF1ab/nsp8128L128LCtaTta55P.1.140.000239
ORF1ab/nsp8128L128LCtaTta44A0.001548
ORF1ab/nsp8128L128LCtaTta34A.23.10.002113
ORF1ab/nsp8128L128LCtaTta44AY.1110.000733
ORF1ab/nsp8128L128LCtaTta44AY.1170.000338
ORF1ab/nsp8128L128LCtaTta44AY.1200.000149
ORF1ab/nsp8128L128LCtaTta44AY.16.10.00188
ORF1ab/nsp8128L128LCtaTta44AY.4.50.00043
ORF1ab/nsp8128L128LCtaTta44AY.46.50.000794
ORF1ab/nsp8128L128LCtaTta44AY.520.003257
ORF1ab/nsp8128L128LCtaTta44AY.640.002381
ORF1ab/nsp8128L128LCtaTta34AY.75.10.000541
ORF1ab/nsp8128L128LCtaTta44AY.980.000316
ORF1ab/nsp8128L128LCtaTta44B.1.177.100.003512
ORF1ab/nsp8128L128LCtaTta44B.1.177.570.001124
ORF1ab/nsp8128L128LCtaTta44B.1.177.810.000757
ORF1ab/nsp8128L128LCtaTta44B.1.177.830.005926
ORF1ab/nsp8128L128LCtaTta44B.1.3690.001141
ORF1ab/nsp8128L128LCtaTta44B.1.3980.011905
ORF1ab/nsp8128L128LCtaTta14B.1.6270.00202
ORF1ab/nsp8128L128LCtaTta44C.36.30.002269
ORF1ab/nsp8128L128LCtaTta44P.1.150.000929
ORF1ab/nsp8128L128LCtaTta44P.1.70.001277
ORF1ab/nsp8128L128LCtaTta44Q.40.001819
ORF1ab/nsp8128L128LCtaTta33AE.80.001467
ORF1ab/nsp8128L128LCtaTta33AY.160.001139
ORF1ab/nsp8128L128LCtaTta33AY.280.005671
ORF1ab/nsp8128L128LCtaTta33AY.4.10.002212
ORF1ab/nsp8128L128LCtaTta33AY.4.30.002525
ORF1ab/nsp8128L128LCtaTta33AY.580.002722
ORF1ab/nsp8128L128LCtaTta33AY.680.000821
ORF1ab/nsp8128L128LCtaTta33AY.7.10.000338
ORF1ab/nsp8128L128LCtaTta33AY.740.000347
ORF1ab/nsp8128L128LCtaTta33AY.920.000862
ORF1ab/nsp8128L128LCtaTta33B.1.1.2220.000612
ORF1ab/nsp8128L128LCtaTta33B.1.1.2840.000322
ORF1ab/nsp8128L128LCtaTta33B.1.1.3740.007126
ORF1ab/nsp8128L128LCtaTta33B.1.1.4210.090909
ORF1ab/nsp8128L128LCtaTta33B.1.1.4340.001046
ORF1ab/nsp8128L128LCtaTta33B.1.177.730.001699
ORF1ab/nsp8128L128LCtaTta33B.1.36.80.003
ORF1ab/nsp8128L128LCtaTta33B.1.5230.007353
ORF1ab/nsp8128L128LCtaTta33B.1.5400.029126
ORF1ab/nsp8128L128LCtaTta33B.1.5510.003871
ORF1ab/nsp8128L128LCtaTta33B.1.5610.001191
ORF1ab/nsp8128L128LCtaTta33B.1.5770.002062
ORF1ab/nsp8128L128LCtaTta23B.1.5880.00182
ORF1ab/nsp8128L128LCtaTta33B.60.00273
ORF1ab/nsp8128L128LCtaTta33R.10.00027
ORF1ab/nsp8128L128LCtaTta22A.2.50.000998
ORF1ab/nsp8128L128LCtaTta22AY.1080.002205
ORF1ab/nsp8128L128LCtaTta22AY.1100.000225
ORF1ab/nsp8128L128LCtaTta22AY.116.10.000623
ORF1ab/nsp8128L128LCtaTta22AY.4.2.10.000298
ORF1ab/nsp8128L128LCtaTta22AY.770.002255
ORF1ab/nsp8128L128LCtaTta12AY.780.001541
ORF1ab/nsp8128L128LCtaTta22AY.850.000854
ORF1ab/nsp8128L128LCtaTta22AY.910.001461
ORF1ab/nsp8128L128LCtaTta22AY.99.20.000184
ORF1ab/nsp8128L128LCtaTta22B.1.1.1740.006757
ORF1ab/nsp8128L128LCtaTta22B.1.1.2940.002532
ORF1ab/nsp8128L128LCtaTta22B.1.1.3160.00185
ORF1ab/nsp8128L128LCtaTta12B.1.1.4090.002833
ORF1ab/nsp8128L128LCtaTta22B.1.1470.001512
ORF1ab/nsp8128L128LCtaTta22B.1.1570.00597
ORF1ab/nsp8128L128LCtaTta22B.1.177.440.001038
ORF1ab/nsp8128L128LCtaTta22B.1.177.760.004988
ORF1ab/nsp8128L128LCtaTta22B.1.177.820.000955
ORF1ab/nsp8128L128LCtaTta22B.1.2400.000431
ORF1ab/nsp8128L128LCtaTta22B.1.3490.00143
ORF1ab/nsp8128L128LCtaTta22B.1.36.180.00084
ORF1ab/nsp8128L128LCtaTta22B.1.4000.000858
ORF1ab/nsp8128L128LCtaTta22B.1.4620.014493
ORF1ab/nsp8128L128LCtaTta22B.1.5760.001813
ORF1ab/nsp8128L128LCtaTta22B.1.5800.00813
ORF1ab/nsp8128L128LCtaTta22B.1.6360.013423
ORF1ab/nsp8128L128LCtaTta22B.400.000729
ORF1ab/nsp8128L128LCtaTta22C.350.001548
ORF1ab/nsp8128L128LCtaTta22P.1.10.000635
ORF1ab/nsp8128L128LCtaTta11A.2.5.10.004808
ORF1ab/nsp8128L128LCtaTta11A.2.5.20.001572
ORF1ab/nsp8128L128LCtaTta11AA.20.007692
ORF1ab/nsp8128L128LCtaTta11AD.20.000219
ORF1ab/nsp8128L128LCtaTta11AY.1040.001984
ORF1ab/nsp8128L128LCtaTta11AY.1140.000231
ORF1ab/nsp8128L128LCtaTta11AY.1210.000135
ORF1ab/nsp8128L128LCtaTta11AY.29.10.000221
ORF1ab/nsp8128L128LCtaTta11AY.300.000396
ORF1ab/nsp8128L128LCtaTta11AY.320.000532
ORF1ab/nsp8128L128LCtaTta11AY.340.000097
ORF1ab/nsp8128L128LCtaTta11AY.34.10.00051
ORF1ab/nsp8128L128LCtaTta11AY.370.000316
ORF1ab/nsp8128L128LCtaTta11AY.4.40.000409
ORF1ab/nsp8128L128LCtaTta11AY.410.000294
ORF1ab/nsp8128L128LCtaTta11AY.540.000095
ORF1ab/nsp8128L128LCtaTta11AY.550.000917
ORF1ab/nsp8128L128LCtaTta11AY.620.000436
ORF1ab/nsp8128L128LCtaTta11AY.7.20.000559
ORF1ab/nsp8128L128LCtaTta11AY.700.000209
ORF1ab/nsp8128L128LCtaTta11AY.800.001129
ORF1ab/nsp8128L128LCtaTta11AY.880.000884
ORF1ab/nsp8128L128LCtaTta11AY.950.000761
ORF1ab/nsp8128L128LCtaTta11AY.970.001701
ORF1ab/nsp8128L128LCtaTta11AZ.20.000821
ORF1ab/nsp8128L128LCtaTta11B.1.1.1290.009174
ORF1ab/nsp8128L128LCtaTta11B.1.1.1710.003676
ORF1ab/nsp8128L128LCtaTta11B.1.1.1920.002309
ORF1ab/nsp8128L128LCtaTta11B.1.1.1980.001468
ORF1ab/nsp8128L128LCtaTta11B.1.1.2410.00207
ORF1ab/nsp8128L128LCtaTta11B.1.1.2530.002506
ORF1ab/nsp8128L128LCtaTta11B.1.1.2630.001558
ORF1ab/nsp8128L128LCtaTta11B.1.1.2820.011628
ORF1ab/nsp8128L128LCtaTta11B.1.1.3110.000358
ORF1ab/nsp8128L128LCtaTta11B.1.1.3120.001912
ORF1ab/nsp8128L128LCtaTta11B.1.1.3540.004386
ORF1ab/nsp8128L128LCtaTta11B.1.1.3620.005618
ORF1ab/nsp8128L128LCtaTta11B.1.1.3690.000446
ORF1ab/nsp8128L128LCtaTta11B.1.1.3720.000689
ORF1ab/nsp8128L128LCtaTta11B.1.1.3890.006061
ORF1ab/nsp8128L128LCtaTta11B.1.1.4020.011111
ORF1ab/nsp8128L128LCtaTta11B.1.1.4170.002703
ORF1ab/nsp8128L128LCtaTta11B.1.1.4350.034483
ORF1ab/nsp8128L128LCtaTta11B.1.1.4480.002033
ORF1ab/nsp8128L128LCtaTta11B.1.1.500.000679
ORF1ab/nsp8128L128LCtaTta11B.1.1.5140.038462
ORF1ab/nsp8128L128LCtaTta11B.1.1.5230.001563
ORF1ab/nsp8128L128LCtaTta11B.1.1110.001175
ORF1ab/nsp8128L128LCtaTta11B.1.1190.010526
ORF1ab/nsp8128L128LCtaTta11B.1.1280.000635
ORF1ab/nsp8128L128LCtaTta11B.1.1690.014925
ORF1ab/nsp8128L128LCtaTta11B.1.177.110.001698
ORF1ab/nsp8128L128LCtaTta11B.1.177.320.00135
ORF1ab/nsp8128L128LCtaTta11B.1.177.330.001645
ORF1ab/nsp8128L128LCtaTta11B.1.177.540.000606
ORF1ab/nsp8128L128LCtaTta11B.1.177.580.001332
ORF1ab/nsp8128L128LCtaTta11B.1.177.60.000977
ORF1ab/nsp8128L128LCtaTta11B.1.177.70.000165
ORF1ab/nsp8128L128LCtaTta11B.1.177.770.000726
ORF1ab/nsp8128L128LCtaTta11B.1.1800.05
ORF1ab/nsp8128L128LCtaTta11B.1.2060.000816
ORF1ab/nsp8128L128LCtaTta11B.1.2470.014925
ORF1ab/nsp8128L128LCtaTta11B.1.258.210.007752
ORF1ab/nsp8128L128LCtaTta11B.1.258.70.001912
ORF1ab/nsp8128L128LCtaTta11B.1.2650.001271
ORF1ab/nsp8128L128LCtaTta11B.1.30.002618
ORF1ab/nsp8128L128LCtaTta11B.1.3440.008197
ORF1ab/nsp8128L128LCtaTta11B.1.351.20.000303
ORF1ab/nsp8128L128LCtaTta11B.1.351.30.000876
ORF1ab/nsp8128L128LCtaTta11B.1.36.10.00114
ORF1ab/nsp8128L128LCtaTta11B.1.36.170.000494
ORF1ab/nsp8128L128LCtaTta11B.1.36.210.00216
ORF1ab/nsp8128L128LCtaTta11B.1.3610.001289
ORF1ab/nsp8128L128LCtaTta11B.1.3910.001127
ORF1ab/nsp8128L128LCtaTta11B.1.3960.000706
ORF1ab/nsp8128L128LCtaTta11B.1.4030.003268
ORF1ab/nsp8128L128LCtaTta11B.1.4130.004255
ORF1ab/nsp8128L128LCtaTta11B.1.4320.011236
ORF1ab/nsp8128L128LCtaTta11B.1.4560.003268
ORF1ab/nsp8128L128LCtaTta11B.1.4600.017857
ORF1ab/nsp8128L128LCtaTta11B.1.4660.023256
ORF1ab/nsp8128L128LCtaTta11B.1.4680.005714
ORF1ab/nsp8128L128LCtaTta11B.1.4700.001404
ORF1ab/nsp8128L128LCtaTta11B.1.4800.002488
ORF1ab/nsp8128L128LCtaTta11B.1.5090.000866
ORF1ab/nsp8128L128LCtaTta11B.1.5170.000427
ORF1ab/nsp8128L128LCtaTta11B.1.5180.011765
ORF1ab/nsp8128L128LCtaTta11B.1.5890.007576
ORF1ab/nsp8128L128LCtaTta11B.1.5950.000261
ORF1ab/nsp8128L128LCtaTta11B.1.6090.000479
ORF1ab/nsp8128L128LCtaTta11B.1.6230.000536
ORF1ab/nsp8128L128LCtaTta11B.1.6380.052632
ORF1ab/nsp8128L128LCtaTta11B.280.003279
ORF1ab/nsp8128L128LCtaTta11L.10.001905
ORF1ab/nsp8128L128LCtaTta11N.60.007092
ORF1ab/nsp8128L128LCtaTta11P.1.100.000269
ORF1ab/nsp8128L128LCtaTta11P.1.170.000162
ORF1ab/nsp8128L128LCtaTta11P.1.17.10.000875
ORF1ab/nsp8128L128LCtaTta11P.20.000187
ORF1ab/nsp8128L128LCtaTta11Q.10.000126
ORF1ab/nsp8128L128LCtaTta11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.